Wall clock time and date at job start Mon Mar 30 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46971 * 2 1 4 4 N 1.46895 * 109.47217 * 119.99633 * 2 1 3 5 5 C 1.46902 * 111.00601 * 275.00050 * 4 2 1 6 6 C 1.50695 * 109.47367 * 179.97438 * 5 4 2 7 7 H 1.07992 * 120.00251 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99586 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00311 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99671 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47089 * 90.00302 * 10 8 6 12 12 H 1.48504 * 109.47131 * 210.00231 * 10 8 6 13 13 H 1.48504 * 109.47180 * 330.00258 * 10 8 6 14 14 C 1.50698 * 109.47198 * 240.00070 * 2 1 3 15 15 C 1.38265 * 119.99687 * 262.59298 * 14 2 1 16 16 C 1.38213 * 119.99705 * 179.97438 * 15 14 2 17 17 C 1.38262 * 119.99918 * 359.97438 * 16 15 14 18 18 C 1.38205 * 119.99975 * 359.80934 * 17 16 15 19 19 C 1.38213 * 120.00013 * 82.61409 * 14 2 1 20 20 N 1.48019 * 120.00132 * 359.97438 * 19 14 2 21 21 O 1.21798 * 119.99984 * 174.26263 * 20 19 14 22 22 O 1.21801 * 119.99670 * 353.97998 * 20 19 14 23 23 H 1.08999 * 109.47110 * 59.99816 * 1 2 3 24 24 H 1.08996 * 109.46853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46966 * 299.99932 * 1 2 3 26 26 H 1.00906 * 110.99976 * 151.04593 * 4 2 1 27 27 H 1.09001 * 109.46976 * 300.00278 * 5 4 2 28 28 H 1.09002 * 109.46778 * 59.99686 * 5 4 2 29 29 H 0.97001 * 120.00216 * 179.97438 * 9 8 6 30 30 H 1.07995 * 120.00185 * 359.97423 * 15 14 2 31 31 H 1.07999 * 119.99864 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.99520 * 179.97438 * 17 16 15 33 33 H 1.08006 * 119.99839 * 180.22624 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2227 2.3469 6 6 2.5874 -0.5217 3.5560 7 1 2.8371 -1.5696 3.4797 8 6 2.7316 0.1355 4.7596 9 7 2.4280 1.4117 4.8525 10 14 3.3581 -0.7871 6.2582 11 1 4.8391 -0.6938 6.3134 12 1 2.7782 -0.1874 7.4868 13 1 2.9550 -2.2134 6.1657 14 6 2.0324 -0.7104 -1.2304 15 6 2.4083 -2.0389 -1.1566 16 6 2.8686 -2.6906 -2.2852 17 6 2.9525 -2.0141 -3.4881 18 6 2.5724 -0.6875 -3.5629 19 6 2.1177 -0.0338 -2.4326 20 7 1.7151 1.3884 -2.5117 21 8 1.8876 2.0138 -3.5425 22 8 1.2065 1.9318 -1.5475 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.9174 -1.1204 1.0287 27 1 2.7589 1.0463 2.1182 28 1 1.0871 0.6164 2.5525 29 1 2.5291 1.8739 5.6993 30 1 2.3424 -2.5673 -0.2171 31 1 3.1626 -3.7281 -2.2274 32 1 3.3125 -2.5233 -4.3699 33 1 2.6345 -0.1601 -4.5034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020526274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:26 Heat of formation + Delta-G solvation = 26.546304 kcal Electronic energy + Delta-G solvation = -18102.064261 eV Core-core repulsion = 15131.246381 eV Total energy + Delta-G solvation = -2970.817880 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.13373 -39.64848 -36.80136 -35.84945 -33.02371 -32.05812 -31.06407 -29.16644 -26.50782 -26.08739 -23.71434 -22.71552 -21.64675 -20.25554 -18.97672 -18.42271 -17.40442 -16.87567 -16.01177 -15.66218 -14.86710 -14.67364 -14.44890 -14.03963 -13.51406 -12.78906 -12.65812 -12.32694 -12.03244 -11.73064 -11.58601 -11.36445 -11.32698 -11.16205 -10.85133 -10.82039 -10.64373 -10.18730 -9.95068 -9.66559 -9.30064 -9.09639 -8.50837 -7.43842 -6.05220 -4.08164 -0.07794 0.88798 1.42189 1.54657 3.23430 3.29638 3.36090 3.39595 4.25984 4.34455 4.42914 4.62008 4.80995 4.85104 5.12265 5.19458 5.30674 5.47872 5.68804 5.79534 5.85592 5.94728 6.01046 6.23879 6.30833 6.43218 6.59008 6.75114 7.20399 7.35865 7.71928 7.81573 8.07544 8.25860 8.49708 8.99945 9.56589 11.05698 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028536 B = 0.005558 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.966908 B = 5037.008503 C = 5682.546936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.101 3.899 3 H 0.080 0.920 4 N -0.684 5.684 5 C 0.195 3.805 6 C -0.517 4.517 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.273 1.273 14 C -0.006 4.006 15 C -0.109 4.109 16 C -0.068 4.068 17 C -0.131 4.131 18 C -0.060 4.060 19 C -0.047 4.047 20 N 0.030 4.970 21 O -0.182 6.182 22 O -0.142 6.142 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.327 0.673 27 H -0.011 1.011 28 H 0.034 0.966 29 H 0.262 0.738 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -7.486 -16.321 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.009 4.009 3 H 0.098 0.902 4 N -0.317 5.317 5 C 0.069 3.931 6 C -0.556 4.556 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.533 5.533 10 Si 0.727 3.273 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.198 1.198 14 C -0.008 4.008 15 C -0.128 4.128 16 C -0.086 4.086 17 C -0.150 4.150 18 C -0.079 4.079 19 C -0.131 4.131 20 N 0.546 4.454 21 O -0.392 6.392 22 O -0.359 6.359 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.006 0.994 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.178 0.822 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.038 -8.221 -16.007 17.995 hybrid contribution 1.059 0.540 0.567 1.317 sum 1.021 -7.681 -15.441 17.276 Atomic orbital electron populations 1.21620 0.92711 1.01413 1.02015 1.20984 0.97022 0.96697 0.86199 0.90235 1.60941 1.32125 1.35113 1.03484 1.19620 0.97022 0.90078 0.86420 1.21130 1.43777 0.96673 0.94006 0.92002 1.24989 0.95608 0.94897 0.99005 1.69962 1.48389 1.08975 1.26007 0.86487 0.78786 0.79925 0.82116 1.20769 1.21188 1.19798 1.20358 0.92198 0.94385 0.93826 1.21382 0.98121 0.92766 1.00524 1.21672 0.94083 1.00652 0.92203 1.21150 1.01546 0.93220 0.99041 1.20978 0.94542 0.95037 0.97324 1.21025 1.12571 0.82008 0.97512 1.43615 0.98569 1.03158 1.00078 1.94488 1.59887 1.64795 1.19992 1.94564 1.42312 1.71627 1.27442 0.93214 0.92756 0.91009 0.85537 0.99367 0.94809 0.92808 0.82178 0.84119 0.83996 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.92 37.16 0.33 -1.74 16 2 C 0.10 1.84 2.08 -68.87 -0.14 1.69 16 3 H 0.08 1.64 5.55 -51.92 -0.29 1.35 16 4 N -0.68 -14.04 5.57 -109.22 -0.61 -14.65 16 5 C 0.19 5.04 5.24 -4.98 -0.03 5.01 16 6 C -0.52 -14.37 9.32 -34.44 -0.32 -14.69 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 10 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 14 C -0.01 -0.09 4.96 -104.62 -0.52 -0.61 16 15 C -0.11 -1.34 8.86 -39.58 -0.35 -1.69 16 16 C -0.07 -0.61 10.05 -39.58 -0.40 -1.01 16 17 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 18 C -0.06 -0.66 9.56 -39.59 -0.38 -1.04 16 19 C -0.05 -0.69 6.83 -79.95 -0.55 -1.23 16 20 N 0.03 0.50 4.45 33.96 0.15 0.65 16 21 O -0.18 -3.01 18.46 -29.46 -0.54 -3.55 16 22 O -0.14 -2.62 13.59 -29.46 -0.40 -3.02 16 23 H 0.05 0.81 6.67 -51.93 -0.35 0.46 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.34 7.45 -51.93 -0.39 0.95 16 26 H 0.33 6.29 7.12 -39.29 -0.28 6.01 16 27 H -0.01 -0.32 8.06 -51.93 -0.42 -0.74 16 28 H 0.03 0.94 7.44 -51.93 -0.39 0.56 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.16 1.97 6.84 -52.49 -0.36 1.61 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.15 1.39 7.62 -52.48 -0.40 0.99 16 LS Contribution 284.68 15.07 4.29 4.29 Total: -1.00 -31.08 284.68 -7.92 -39.00 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -3.68 Total: 2.12 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.85 Total: -15.30 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.28 Total: -39.93 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.94 Total: -6.58 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.08 -7.92 -39.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020526274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.547 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds