Wall clock time and date at job start Mon Mar 30 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46971 * 2 1 4 4 N 1.46895 * 109.47217 * 119.99633 * 2 1 3 5 5 C 1.46902 * 111.00601 * 275.00050 * 4 2 1 6 6 C 1.50695 * 109.47367 * 179.97438 * 5 4 2 7 7 H 1.07992 * 120.00251 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99586 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00311 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99671 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47089 * 90.00302 * 10 8 6 12 12 H 1.48504 * 109.47131 * 210.00231 * 10 8 6 13 13 H 1.48504 * 109.47180 * 330.00258 * 10 8 6 14 14 C 1.50698 * 109.47198 * 240.00070 * 2 1 3 15 15 C 1.38265 * 119.99687 * 262.59298 * 14 2 1 16 16 C 1.38213 * 119.99705 * 179.97438 * 15 14 2 17 17 C 1.38262 * 119.99918 * 359.97438 * 16 15 14 18 18 C 1.38205 * 119.99975 * 359.80934 * 17 16 15 19 19 C 1.38213 * 120.00013 * 82.61409 * 14 2 1 20 20 N 1.48019 * 120.00132 * 359.97438 * 19 14 2 21 21 O 1.21798 * 119.99984 * 174.26263 * 20 19 14 22 22 O 1.21801 * 119.99670 * 353.97998 * 20 19 14 23 23 H 1.08999 * 109.47110 * 59.99816 * 1 2 3 24 24 H 1.08996 * 109.46853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46966 * 299.99932 * 1 2 3 26 26 H 1.00906 * 110.99976 * 151.04593 * 4 2 1 27 27 H 1.09001 * 109.46976 * 300.00278 * 5 4 2 28 28 H 1.09002 * 109.46778 * 59.99686 * 5 4 2 29 29 H 0.97001 * 120.00216 * 179.97438 * 9 8 6 30 30 H 1.07995 * 120.00185 * 359.97423 * 15 14 2 31 31 H 1.07999 * 119.99864 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.99520 * 179.97438 * 17 16 15 33 33 H 1.08006 * 119.99839 * 180.22624 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2227 2.3469 6 6 2.5874 -0.5217 3.5560 7 1 2.8371 -1.5696 3.4797 8 6 2.7316 0.1355 4.7596 9 7 2.4280 1.4117 4.8525 10 14 3.3581 -0.7871 6.2582 11 1 4.8391 -0.6938 6.3134 12 1 2.7782 -0.1874 7.4868 13 1 2.9550 -2.2134 6.1657 14 6 2.0324 -0.7104 -1.2304 15 6 2.4083 -2.0389 -1.1566 16 6 2.8686 -2.6906 -2.2852 17 6 2.9525 -2.0141 -3.4881 18 6 2.5724 -0.6875 -3.5629 19 6 2.1177 -0.0338 -2.4326 20 7 1.7151 1.3884 -2.5117 21 8 1.8876 2.0138 -3.5425 22 8 1.2065 1.9318 -1.5475 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.9174 -1.1204 1.0287 27 1 2.7589 1.0463 2.1182 28 1 1.0871 0.6164 2.5525 29 1 2.5291 1.8739 5.6993 30 1 2.3424 -2.5673 -0.2171 31 1 3.1626 -3.7281 -2.2274 32 1 3.3125 -2.5233 -4.3699 33 1 2.6345 -0.1601 -4.5034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020526274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:25 Heat of formation + Delta-G solvation = 6.631940 kcal Electronic energy + Delta-G solvation = -18102.927813 eV Core-core repulsion = 15131.246381 eV Total energy + Delta-G solvation = -2971.681432 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.35004 -40.69309 -38.13016 -37.32078 -34.98125 -33.15261 -32.44073 -30.56031 -28.22477 -27.50723 -24.97337 -24.14924 -23.06985 -21.68565 -20.14494 -19.63942 -18.67839 -18.62714 -17.34071 -16.95312 -16.56323 -15.98967 -15.62240 -15.28799 -14.92976 -14.36047 -14.12824 -13.72281 -13.39686 -13.25639 -13.09186 -12.81005 -12.71352 -12.63966 -12.53950 -12.30776 -12.14355 -11.94041 -11.62488 -11.31520 -10.67540 -10.55478 -10.13525 -9.25839 -8.22968 -6.35535 -1.21218 0.00539 0.32608 0.43042 1.41372 1.43694 1.55350 2.35667 2.39252 3.10398 3.13193 3.34438 3.60414 3.83615 4.00249 4.06938 4.18464 4.32039 4.38944 4.67662 4.79365 4.85509 4.93289 5.01858 5.11534 5.14985 5.20814 5.22586 5.32137 5.59454 5.61467 5.97778 6.32442 6.48538 6.61833 6.84516 7.35576 8.89073 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.028536 B = 0.005558 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.966908 B = 5037.008503 C = 5682.546936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.104 3.896 3 H 0.047 0.953 4 N -0.671 5.671 5 C 0.211 3.789 6 C -0.534 4.534 7 H 0.072 0.928 8 C -0.002 4.002 9 N -0.936 5.936 10 Si 0.978 3.022 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.260 1.260 14 C -0.030 4.030 15 C -0.118 4.118 16 C -0.044 4.044 17 C -0.108 4.108 18 C -0.057 4.057 19 C -0.068 4.068 20 N 0.031 4.969 21 O -0.163 6.163 22 O -0.211 6.211 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.336 0.664 27 H -0.047 1.047 28 H 0.002 0.998 29 H 0.265 0.735 30 H 0.157 0.843 31 H 0.185 0.815 32 H 0.192 0.808 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -11.102 -18.177 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.006 4.006 3 H 0.065 0.935 4 N -0.303 5.303 5 C 0.083 3.917 6 C -0.572 4.572 7 H 0.090 0.910 8 C -0.200 4.200 9 N -0.576 5.576 10 Si 0.802 3.198 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.183 1.183 14 C -0.032 4.032 15 C -0.137 4.137 16 C -0.061 4.061 17 C -0.126 4.126 18 C -0.076 4.076 19 C -0.152 4.152 20 N 0.542 4.458 21 O -0.382 6.382 22 O -0.413 6.413 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.155 0.845 27 H -0.030 1.030 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.174 0.826 31 H 0.203 0.797 32 H 0.209 0.791 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.451 -11.831 -17.775 21.402 hybrid contribution 0.644 1.576 0.901 1.926 sum 2.095 -10.255 -16.874 19.857 Atomic orbital electron populations 1.21515 0.92626 1.01769 1.00999 1.20779 0.97252 0.95465 0.87111 0.93531 1.60785 1.32545 1.33704 1.03285 1.19220 0.94146 0.89841 0.88452 1.21515 1.43786 0.97208 0.94731 0.90996 1.26033 0.95571 0.95736 1.02634 1.70121 1.49524 1.10937 1.27025 0.85261 0.78357 0.78856 0.77365 1.19734 1.20980 1.18348 1.20043 0.95041 0.95688 0.92438 1.21475 0.98714 0.91463 1.02050 1.22171 0.90929 1.02307 0.90734 1.21753 0.98657 0.91708 1.00450 1.21421 0.93343 0.96210 0.96590 1.21259 1.14749 0.80358 0.98830 1.44046 0.97944 1.04317 0.99533 1.94424 1.58419 1.65608 1.19707 1.94588 1.45599 1.72911 1.28173 0.92549 0.91448 0.93703 0.84501 1.02961 0.97964 0.92630 0.82569 0.79726 0.79096 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.14 8.92 71.98 0.64 -3.50 16 2 C 0.10 4.03 2.08 44.17 0.09 4.12 16 3 H 0.05 2.14 5.55 -2.38 -0.01 2.13 16 4 N -0.67 -28.82 5.57 -499.46 -2.78 -31.60 16 5 C 0.21 11.65 5.24 85.56 0.45 12.09 16 6 C -0.53 -30.42 9.32 25.60 0.24 -30.18 16 7 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 8 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 9 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 10 Si 0.98 44.12 29.54 68.60 2.03 46.15 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 14 C -0.03 -0.90 4.96 -19.86 -0.10 -1.00 16 15 C -0.12 -2.61 8.86 22.27 0.20 -2.41 16 16 C -0.04 -0.55 10.05 22.27 0.22 -0.32 16 17 C -0.11 -1.18 10.05 22.27 0.22 -0.96 16 18 C -0.06 -1.04 9.56 22.27 0.21 -0.83 16 19 C -0.07 -1.92 6.83 36.37 0.25 -1.67 16 20 N 0.03 1.09 4.45 -46.46 -0.21 0.88 16 21 O -0.16 -5.39 18.46 18.89 0.35 -5.04 16 22 O -0.21 -8.50 13.59 18.89 0.26 -8.25 16 23 H 0.06 1.99 6.67 -2.39 -0.02 1.97 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.04 1.85 7.45 -2.39 -0.02 1.83 16 26 H 0.34 13.23 7.12 -89.69 -0.64 12.59 16 27 H -0.05 -2.89 8.06 -2.39 -0.02 -2.91 16 28 H 0.00 0.14 7.44 -2.39 -0.02 0.12 16 29 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.16 3.55 6.84 -2.91 -0.02 3.53 16 31 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.19 0.40 8.06 -2.91 -0.02 0.38 16 33 H 0.17 2.44 7.62 -2.91 -0.02 2.41 16 Total: -1.00 -72.92 284.68 3.31 -69.60 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.50 Total: 10.12 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 2.89 Total: -24.28 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.70 Total: -88.30 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.61 Total: -13.28 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.92 3.31 -69.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020526274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.235 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds