Wall clock time and date at job start Mon Mar 30 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35661 * 117.00031 * 2 1 4 4 C 1.39279 * 119.83095 * 359.97438 * 3 2 1 5 5 C 1.36430 * 120.40433 * 180.02562 * 4 3 2 6 6 C 1.40174 * 120.06010 * 359.97438 * 5 4 3 7 7 C 1.46492 * 120.16703 * 179.97438 * 6 5 4 8 8 O 1.21334 * 119.99681 * 180.02562 * 7 6 5 9 9 C 1.50702 * 119.99710 * 0.02616 * 7 6 5 10 10 C 1.50701 * 109.46703 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00495 * 359.97438 * 10 9 7 12 12 C 1.37879 * 119.99726 * 179.97438 * 10 9 7 13 13 N 1.31520 * 119.99589 * 179.97438 * 12 10 9 14 14 Si 1.86792 * 119.99966 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46980 * 90.00304 * 14 12 10 16 16 H 1.48501 * 109.46971 * 209.99902 * 14 12 10 17 17 H 1.48493 * 109.47451 * 329.99685 * 14 12 10 18 18 C 1.40647 * 119.66719 * 359.97438 * 6 5 4 19 19 O 1.35597 * 120.20136 * 179.97438 * 18 6 5 20 20 C 1.42903 * 117.00273 * 180.02562 * 19 18 6 21 21 C 1.38429 * 119.59811 * 0.27464 * 18 6 5 22 22 H 1.08996 * 109.47596 * 60.00540 * 1 2 3 23 23 H 1.09003 * 109.47066 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47137 * 299.99863 * 1 2 3 25 25 H 1.07994 * 119.80247 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.97059 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.46927 * 299.99774 * 9 7 6 28 28 H 1.08997 * 109.47010 * 59.99728 * 9 7 6 29 29 H 0.96998 * 119.99135 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.47382 * 179.97438 * 20 19 18 31 31 H 1.09001 * 109.46938 * 59.99941 * 20 19 18 32 32 H 1.09004 * 109.46926 * 300.00062 * 20 19 18 33 33 H 1.07998 * 120.03174 * 179.72129 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2829 2.3746 -0.0005 5 6 1.8901 3.5963 -0.0011 6 6 3.2890 3.6852 -0.0005 7 6 3.9434 4.9958 -0.0017 8 8 5.1545 5.0691 -0.0017 9 6 3.1123 6.2529 -0.0028 10 6 4.0206 7.4555 -0.0032 11 1 5.0924 7.3227 -0.0023 12 6 3.4832 8.7252 -0.0048 13 7 4.2759 9.7747 -0.0046 14 14 1.6295 8.9548 -0.0072 15 1 1.1366 9.0168 1.3924 16 1 1.2881 10.2185 -0.7085 17 1 0.9899 7.8120 -0.7071 18 6 4.0612 2.5096 0.0011 19 8 5.4152 2.5829 0.0011 20 6 6.1319 1.3466 0.0022 21 6 3.4305 1.2773 -0.0036 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2048 2.3112 -0.0005 26 1 1.2924 4.4959 -0.0019 27 1 2.4834 6.2718 -0.8929 28 1 2.4832 6.2734 0.8871 29 1 3.8978 10.6679 -0.0054 30 1 7.2032 1.5477 0.0017 31 1 5.8696 0.7738 -0.8872 32 1 5.8695 0.7754 0.8928 33 1 4.0167 0.3702 -0.0069 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024863537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:44 Heat of formation + Delta-G solvation = -81.889544 kcal Electronic energy + Delta-G solvation = -17867.434811 eV Core-core repulsion = 14859.622048 eV Total energy + Delta-G solvation = -3007.812763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.58815 -39.12850 -37.88702 -36.22846 -32.79536 -31.21891 -30.07820 -29.42816 -27.49183 -27.17082 -24.00889 -22.64197 -21.60181 -19.11685 -18.63706 -16.92548 -16.76516 -16.19885 -16.05592 -15.57893 -15.53442 -14.76950 -14.37931 -14.09516 -13.85904 -13.54397 -12.96378 -12.59254 -12.56714 -12.47110 -12.11852 -11.66758 -11.50848 -11.33464 -11.03350 -10.79102 -10.63805 -10.49012 -9.88773 -9.18992 -8.63516 -8.52673 -8.43948 -7.98085 -5.98239 -3.97105 1.05855 1.45421 2.98726 3.13476 3.30222 3.35997 3.38156 3.40056 4.08873 4.45459 4.67554 4.80701 4.92373 4.93569 4.96229 5.05243 5.17703 5.21920 5.33205 5.33971 5.46948 5.55382 5.64980 5.92869 6.20219 6.38664 6.55088 6.64590 6.80185 7.02054 7.15548 7.48238 7.71123 8.55457 8.78109 9.19842 9.60915 11.15158 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023986 B = 0.006284 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.057054 B = 4454.492596 C = 5595.799034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.182 3.818 4 C -0.258 4.258 5 C 0.003 3.997 6 C -0.225 4.225 7 C 0.397 3.603 8 O -0.435 6.435 9 C -0.055 4.055 10 C -0.515 4.515 11 H 0.090 0.910 12 C 0.068 3.932 13 N -0.899 5.899 14 Si 0.873 3.127 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.265 1.265 18 C 0.212 3.788 19 O -0.275 6.275 20 C 0.020 3.980 21 C -0.262 4.262 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.058 0.942 25 H 0.132 0.868 26 H 0.143 0.857 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.174 -20.738 -0.007 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.136 3.864 4 C -0.277 4.277 5 C -0.015 4.015 6 C -0.227 4.227 7 C 0.273 3.727 8 O -0.308 6.308 9 C -0.093 4.093 10 C -0.553 4.553 11 H 0.108 0.892 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.700 3.300 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.190 1.190 18 C 0.164 3.836 19 O -0.185 6.185 20 C -0.075 4.075 21 C -0.282 4.282 22 H 0.077 0.923 23 H 0.117 0.883 24 H 0.077 0.923 25 H 0.149 0.851 26 H 0.161 0.839 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.294 -20.523 -0.011 21.781 hybrid contribution -1.445 0.009 0.017 1.445 sum -8.739 -20.514 0.006 22.298 Atomic orbital electron populations 1.23100 0.78056 1.03875 1.01838 1.85985 1.21721 1.27222 1.88000 1.18881 0.91474 0.84068 0.91961 1.20835 1.00189 0.92075 1.14587 1.20927 0.92746 0.97777 0.90090 1.20514 0.93524 0.94385 1.14294 1.22381 0.89792 0.88606 0.71917 1.90460 1.16507 1.89070 1.34782 1.19972 0.97518 0.93444 0.98329 1.21063 0.95675 0.88086 1.50440 0.89206 1.24994 0.97611 0.95904 0.94824 1.69910 1.34784 0.98129 1.51019 0.86894 0.86624 0.77901 0.78534 1.20155 1.21207 1.19014 1.19016 0.83061 0.92164 0.89401 1.86408 1.14368 1.31456 1.86312 1.23164 0.97425 0.85775 1.01112 1.20294 0.92556 0.97398 1.17903 0.92296 0.88287 0.92303 0.85053 0.83893 0.93307 0.93751 0.92707 0.87964 0.92653 0.92646 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.80 101.05 0.99 1.18 16 2 O -0.32 -3.63 10.48 -18.68 -0.20 -3.82 16 3 C 0.18 2.43 6.69 -39.01 -0.26 2.17 16 4 C -0.26 -3.32 8.96 -39.85 -0.36 -3.68 16 5 C 0.00 0.04 9.41 -39.51 -0.37 -0.33 16 6 C -0.23 -4.23 5.88 -104.94 -0.62 -4.85 16 7 C 0.40 9.23 7.09 -30.98 -0.22 9.01 16 8 O -0.43 -11.57 14.26 -16.43 -0.23 -11.80 16 9 C -0.06 -1.35 3.12 -29.03 -0.09 -1.44 16 10 C -0.51 -15.37 9.48 -34.44 -0.33 -15.69 16 11 H 0.09 3.02 7.00 -52.48 -0.37 2.65 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -28.36 13.96 55.43 0.77 -27.58 16 14 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 18 C 0.21 3.65 6.70 -38.60 -0.26 3.39 16 19 O -0.28 -4.88 8.57 -40.43 -0.35 -5.22 16 20 C 0.02 0.24 9.81 101.05 0.99 1.23 16 21 C -0.26 -3.72 8.97 -39.33 -0.35 -4.08 16 22 H 0.06 0.38 7.64 -51.93 -0.40 -0.01 16 23 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 25 H 0.13 1.29 6.26 -52.49 -0.33 0.96 16 26 H 0.14 2.01 7.03 -52.49 -0.37 1.64 16 27 H 0.05 1.12 7.14 -51.93 -0.37 0.75 16 28 H 0.04 1.00 7.51 -51.93 -0.39 0.61 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.54 7.65 -51.93 -0.40 0.15 16 32 H 0.05 0.55 7.68 -51.93 -0.40 0.15 16 33 H 0.14 1.63 6.30 -52.49 -0.33 1.30 16 LS Contribution 283.31 15.07 4.27 4.27 Total: -1.00 -35.70 283.31 -5.13 -40.83 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -3.76 Total: -1.97 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.97 Total: -11.18 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.77 Total: -27.58 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.78 Total: -20.85 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.70 -5.13 -40.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024863537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.059 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds