Wall clock time and date at job start Mon Mar 30 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36003 * 116.99788 * 2 1 4 4 C 1.38465 * 119.99419 * 359.97438 * 3 2 1 5 5 C 1.38569 * 120.40276 * 179.74585 * 4 3 2 6 6 C 1.37682 * 120.38297 * 359.97438 * 5 4 3 7 7 C 1.40062 * 119.97605 * 359.97438 * 6 5 4 8 8 C 1.46799 * 120.19802 * 180.02562 * 7 6 5 9 9 O 1.21303 * 119.99709 * 180.02562 * 8 7 6 10 10 C 1.50703 * 120.00221 * 359.97438 * 8 7 6 11 11 H 1.09000 * 109.46787 * 35.00307 * 10 8 7 12 12 C 1.52991 * 109.47297 * 275.00078 * 10 8 7 13 13 C 1.50705 * 109.46908 * 155.00116 * 10 8 7 14 14 H 1.08000 * 119.99889 * 359.97438 * 13 10 8 15 15 C 1.37877 * 119.99738 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99951 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 119.99902 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47402 * 59.99461 * 17 15 13 19 19 H 1.48504 * 109.47208 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47079 * 299.99665 * 17 15 13 21 21 C 1.39129 * 119.99053 * 179.72363 * 3 2 1 22 22 O 1.35689 * 120.18897 * 0.25720 * 21 3 2 23 23 H 1.08997 * 109.46788 * 300.00264 * 1 2 3 24 24 H 1.08997 * 109.46962 * 60.00366 * 1 2 3 25 25 H 1.09001 * 109.46722 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.79700 * 359.72395 * 4 3 2 27 27 H 1.08002 * 119.81045 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.01072 * 180.02562 * 6 5 4 29 29 H 1.08995 * 109.47500 * 179.97438 * 12 10 8 30 30 H 1.08998 * 109.47265 * 300.00399 * 12 10 8 31 31 H 1.09004 * 109.47344 * 59.99935 * 12 10 8 32 32 H 0.97000 * 119.99938 * 179.97438 * 16 15 13 33 33 H 0.96692 * 114.00516 * 89.99522 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2922 2.3730 -0.0005 5 6 1.9124 3.6121 0.0048 6 6 3.2862 3.7032 0.0112 7 6 4.0647 2.5389 0.0129 8 6 5.5298 2.6303 0.0202 9 8 6.2005 1.6196 0.0212 10 6 6.2006 3.9798 0.0254 11 1 5.6056 4.6790 0.6129 12 6 6.3221 4.4945 -1.4102 13 6 7.5744 3.8556 0.6325 14 1 7.9262 2.8956 0.9802 15 6 8.3814 4.9678 0.7450 16 7 7.9527 6.1369 0.3220 17 14 10.0845 4.8137 1.4968 18 1 10.8950 3.8617 0.6957 19 1 10.7450 6.1438 1.5031 20 1 9.9671 4.3133 2.8900 21 6 3.4358 1.2845 0.0058 22 8 4.1785 0.1488 0.0062 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2139 2.3125 -0.0055 27 1 1.3147 4.5117 0.0039 28 1 3.7633 4.6721 0.0157 29 1 6.8069 5.4707 -1.4065 30 1 6.9171 3.7952 -1.9977 31 1 5.3285 4.5843 -1.8494 32 1 8.5203 6.9194 0.4015 33 1 4.3973 -0.1784 -0.8769 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031990380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:55 Heat of formation + Delta-G solvation = -91.844613 kcal Electronic energy + Delta-G solvation = -18133.883895 eV Core-core repulsion = 15125.639448 eV Total energy + Delta-G solvation = -3008.244447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38206 -38.62910 -36.99491 -36.27896 -33.74237 -31.14806 -29.79825 -29.56760 -27.30692 -25.16805 -24.15543 -22.26247 -21.63854 -19.21360 -18.06961 -17.12489 -16.55665 -16.08071 -15.86645 -15.17710 -15.01526 -14.63889 -14.14456 -14.05405 -13.49864 -13.14436 -12.66595 -12.37646 -12.17555 -11.92799 -11.51036 -11.25179 -11.04059 -10.98206 -10.70063 -10.66893 -10.45848 -10.23815 -10.03376 -8.98228 -8.64113 -8.48413 -8.24600 -8.04093 -6.02696 -4.07001 0.95743 1.46815 3.13565 3.19022 3.36586 3.38940 3.44958 4.01816 4.38073 4.45370 4.76277 4.93008 4.99802 5.06906 5.23034 5.29197 5.31531 5.45064 5.48800 5.90810 6.18327 6.29596 6.55638 6.59558 6.66675 6.81922 6.90263 6.99883 7.26095 7.51055 7.77528 8.00664 8.01608 8.26369 8.68702 8.98048 9.57725 11.04254 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.040717 B = 0.005553 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.503548 B = 5040.746598 C = 5469.512245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.079 3.921 4 C -0.179 4.179 5 C -0.107 4.107 6 C -0.090 4.090 7 C -0.144 4.144 8 C 0.394 3.606 9 O -0.443 6.443 10 C 0.008 3.992 11 H 0.052 0.948 12 C -0.129 4.129 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.124 3.876 22 O -0.468 6.468 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.146 0.854 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.655 -5.328 -3.013 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.034 3.966 4 C -0.198 4.198 5 C -0.125 4.125 6 C -0.108 4.108 7 C -0.146 4.146 8 C 0.270 3.730 9 O -0.316 6.316 10 C -0.011 4.011 11 H 0.070 0.930 12 C -0.187 4.187 13 C -0.544 4.544 14 H 0.085 0.915 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.078 3.922 22 O -0.277 6.277 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.163 0.837 29 H 0.113 0.887 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -15.178 -5.835 -2.417 16.439 hybrid contribution 0.464 0.149 -0.082 0.494 sum -14.714 -5.686 -2.499 15.971 Atomic orbital electron populations 1.23040 0.78948 1.03734 1.01142 1.86156 1.20801 1.26276 1.89107 1.19381 0.91558 0.84912 1.00762 1.21236 0.99796 0.92043 1.06764 1.20912 0.94677 0.96874 1.00065 1.21559 0.93177 0.98691 0.97360 1.21497 0.98036 0.92005 1.03059 1.23204 0.85536 0.93503 0.70735 1.90402 1.66789 1.39516 1.34928 1.19126 0.96892 0.89142 0.95932 0.92977 1.21682 0.97811 1.04067 0.95111 1.21061 0.98648 0.95364 1.39336 0.91486 1.24920 0.98501 0.95137 0.95397 1.69850 1.37208 0.99170 1.47128 0.86542 0.83955 0.77001 0.79885 1.20143 1.21302 1.20199 1.18095 0.85864 0.86590 1.01670 1.84789 1.71544 1.38517 1.32839 0.92773 0.92832 0.88396 0.85241 0.85182 0.83651 0.88713 0.94951 0.96678 0.92863 0.75659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.32 10.28 -34.31 -0.35 -4.67 16 3 C 0.08 1.21 6.69 -39.17 -0.26 0.95 16 4 C -0.18 -2.29 9.03 -39.38 -0.36 -2.64 16 5 C -0.11 -1.41 10.02 -39.66 -0.40 -1.80 16 6 C -0.09 -1.46 9.35 -39.10 -0.37 -1.83 16 7 C -0.14 -2.79 5.88 -104.97 -0.62 -3.41 16 8 C 0.39 9.16 6.21 -30.85 -0.19 8.97 16 9 O -0.44 -11.32 14.62 -16.39 -0.24 -11.56 16 10 C 0.01 0.20 1.93 -92.92 -0.18 0.02 16 11 H 0.05 1.31 6.74 -51.93 -0.35 0.96 16 12 C -0.13 -3.01 8.95 37.15 0.33 -2.67 16 13 C -0.51 -14.34 8.33 -34.44 -0.29 -14.63 16 14 H 0.07 1.99 7.03 -52.49 -0.37 1.62 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 17 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.12 2.26 6.74 -38.47 -0.26 2.00 16 22 O -0.47 -8.70 11.36 -47.39 -0.54 -9.24 16 23 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 24 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.13 1.22 6.26 -52.49 -0.33 0.89 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.15 2.36 6.47 -52.49 -0.34 2.02 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.39 5.65 9.06 45.56 0.41 6.06 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -32.55 284.41 -5.83 -38.38 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.91 Total: 2.59 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -1.69 Total: -12.22 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.63 Total: -24.32 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -1.13 Total: -25.48 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.55 -5.83 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031990380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.464 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds