Wall clock time and date at job start Mon Mar 30 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36003 * 116.99788 * 2 1 4 4 C 1.38465 * 119.99419 * 359.97438 * 3 2 1 5 5 C 1.38569 * 120.40276 * 179.74585 * 4 3 2 6 6 C 1.37682 * 120.38297 * 359.97438 * 5 4 3 7 7 C 1.40062 * 119.97605 * 359.97438 * 6 5 4 8 8 C 1.46799 * 120.19802 * 180.02562 * 7 6 5 9 9 O 1.21303 * 119.99709 * 180.02562 * 8 7 6 10 10 C 1.50703 * 120.00221 * 359.97438 * 8 7 6 11 11 H 1.09000 * 109.46787 * 35.00307 * 10 8 7 12 12 C 1.52991 * 109.47297 * 275.00078 * 10 8 7 13 13 C 1.50705 * 109.46908 * 155.00116 * 10 8 7 14 14 H 1.08000 * 119.99889 * 359.97438 * 13 10 8 15 15 C 1.37877 * 119.99738 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99951 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 119.99902 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47402 * 59.99461 * 17 15 13 19 19 H 1.48504 * 109.47208 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47079 * 299.99665 * 17 15 13 21 21 C 1.39129 * 119.99053 * 179.72363 * 3 2 1 22 22 O 1.35689 * 120.18897 * 0.25720 * 21 3 2 23 23 H 1.08997 * 109.46788 * 300.00264 * 1 2 3 24 24 H 1.08997 * 109.46962 * 60.00366 * 1 2 3 25 25 H 1.09001 * 109.46722 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.79700 * 359.72395 * 4 3 2 27 27 H 1.08002 * 119.81045 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.01072 * 180.02562 * 6 5 4 29 29 H 1.08995 * 109.47500 * 179.97438 * 12 10 8 30 30 H 1.08998 * 109.47265 * 300.00399 * 12 10 8 31 31 H 1.09004 * 109.47344 * 59.99935 * 12 10 8 32 32 H 0.97000 * 119.99938 * 179.97438 * 16 15 13 33 33 H 0.96692 * 114.00516 * 89.99522 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2922 2.3730 -0.0005 5 6 1.9124 3.6121 0.0048 6 6 3.2862 3.7032 0.0112 7 6 4.0647 2.5389 0.0129 8 6 5.5298 2.6303 0.0202 9 8 6.2005 1.6196 0.0212 10 6 6.2006 3.9798 0.0254 11 1 5.6056 4.6790 0.6129 12 6 6.3221 4.4945 -1.4102 13 6 7.5744 3.8556 0.6325 14 1 7.9262 2.8956 0.9802 15 6 8.3814 4.9678 0.7450 16 7 7.9527 6.1369 0.3220 17 14 10.0845 4.8137 1.4968 18 1 10.8950 3.8617 0.6957 19 1 10.7450 6.1438 1.5031 20 1 9.9671 4.3133 2.8900 21 6 3.4358 1.2845 0.0058 22 8 4.1785 0.1488 0.0062 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2139 2.3125 -0.0055 27 1 1.3147 4.5117 0.0039 28 1 3.7633 4.6721 0.0157 29 1 6.8069 5.4707 -1.4065 30 1 6.9171 3.7952 -1.9977 31 1 5.3285 4.5843 -1.8494 32 1 8.5203 6.9194 0.4015 33 1 4.3973 -0.1784 -0.8769 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031990380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:55 Heat of formation + Delta-G solvation = -113.322005 kcal Electronic energy + Delta-G solvation = -18134.815224 eV Core-core repulsion = 15125.639448 eV Total energy + Delta-G solvation = -3009.175777 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.61725 -40.10431 -38.37253 -37.52974 -35.77252 -32.92669 -31.30352 -30.71225 -28.13539 -27.26050 -25.72501 -23.52371 -23.15291 -20.67846 -19.41819 -18.44325 -18.37068 -17.48282 -16.96299 -16.72007 -16.47403 -16.16977 -15.62261 -15.35083 -14.94777 -14.83121 -14.41263 -13.65816 -13.33502 -13.22081 -13.08263 -12.96237 -12.67732 -12.60783 -12.23399 -12.16972 -12.04678 -11.98584 -11.77896 -11.05244 -10.55239 -10.09272 -9.88997 -9.17979 -8.15339 -6.27004 -0.36499 0.30035 1.40217 1.41554 1.49864 1.63027 2.22246 2.42363 2.69207 3.13026 3.20021 3.41378 3.92053 4.07666 4.19378 4.32742 4.42546 4.43543 4.65675 4.70610 4.77187 4.82869 4.99843 5.04524 5.15125 5.26464 5.38534 5.49169 5.64394 5.71015 5.95756 6.22555 6.28197 6.75840 6.79555 6.91341 7.40151 8.89718 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.040717 B = 0.005553 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.503548 B = 5040.746598 C = 5469.512245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.331 6.331 3 C 0.079 3.921 4 C -0.157 4.157 5 C -0.091 4.091 6 C -0.097 4.097 7 C -0.176 4.176 8 C 0.394 3.606 9 O -0.483 6.483 10 C 0.003 3.997 11 H 0.048 0.952 12 C -0.116 4.116 13 C -0.537 4.537 14 H 0.041 0.959 15 C 0.024 3.976 16 N -0.907 5.907 17 Si 0.953 3.047 18 H -0.278 1.278 19 H -0.272 1.272 20 H -0.276 1.276 21 C 0.100 3.900 22 O -0.489 6.489 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.175 0.825 27 H 0.174 0.826 28 H 0.141 0.859 29 H 0.075 0.925 30 H 0.018 0.982 31 H 0.048 0.952 32 H 0.266 0.734 33 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.507 -4.690 -3.091 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.245 6.245 3 C 0.034 3.966 4 C -0.176 4.176 5 C -0.109 4.109 6 C -0.115 4.115 7 C -0.177 4.177 8 C 0.274 3.726 9 O -0.360 6.360 10 C -0.016 4.016 11 H 0.066 0.934 12 C -0.174 4.174 13 C -0.575 4.575 14 H 0.059 0.941 15 C -0.176 4.176 16 N -0.546 5.546 17 Si 0.778 3.222 18 H -0.204 1.204 19 H -0.196 1.196 20 H -0.201 1.201 21 C 0.054 3.946 22 O -0.301 6.301 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.135 0.865 26 H 0.192 0.808 27 H 0.191 0.809 28 H 0.159 0.841 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -18.055 -5.182 -2.503 18.950 hybrid contribution 1.179 -0.081 -0.066 1.183 sum -16.877 -5.263 -2.569 17.864 Atomic orbital electron populations 1.23445 0.76016 1.05773 1.02762 1.86140 1.23783 1.25781 1.88829 1.19375 0.90580 0.86494 1.00192 1.21745 1.01830 0.90644 1.03368 1.21347 0.93276 0.98803 0.97452 1.21630 0.94760 0.97318 0.97833 1.21109 0.95528 0.94024 1.07063 1.23237 0.87819 0.92106 0.69446 1.90367 1.68225 1.40145 1.37291 1.19102 0.95543 0.90529 0.96395 0.93374 1.21494 0.99301 1.02263 0.94301 1.21238 1.00870 0.94633 1.40738 0.94066 1.25552 1.01571 0.94834 0.95613 1.69921 1.38200 0.99423 1.47013 0.85701 0.80076 0.77489 0.78928 1.20356 1.19635 1.20121 1.18303 0.87424 0.85812 1.03084 1.84731 1.72239 1.39036 1.34057 0.91307 0.90791 0.86493 0.80773 0.80894 0.84084 0.90610 0.96249 0.93283 0.92451 0.74562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.30 16 2 O -0.33 -8.43 10.28 -79.67 -0.82 -9.25 16 3 C 0.08 2.25 6.69 22.54 0.15 2.40 16 4 C -0.16 -3.29 9.03 22.40 0.20 -3.09 16 5 C -0.09 -2.01 10.02 22.22 0.22 -1.79 16 6 C -0.10 -3.03 9.35 22.58 0.21 -2.82 16 7 C -0.18 -6.87 5.88 -20.09 -0.12 -6.99 16 8 C 0.39 19.17 6.21 27.93 0.17 19.34 16 9 O -0.48 -26.26 14.62 17.87 0.26 -26.00 16 10 C 0.00 0.16 1.93 -12.29 -0.02 0.14 16 11 H 0.05 2.49 6.74 -2.39 -0.02 2.48 16 12 C -0.12 -5.51 8.95 71.98 0.64 -4.87 16 13 C -0.54 -31.65 8.33 25.60 0.21 -31.43 16 14 H 0.04 2.58 7.03 -2.91 -0.02 2.56 16 15 C 0.02 1.36 5.30 84.65 0.45 1.80 16 16 N -0.91 -50.97 11.32 21.45 0.24 -50.73 16 17 Si 0.95 45.27 29.54 68.60 2.03 47.29 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 C 0.10 3.65 6.74 22.99 0.15 3.80 16 22 O -0.49 -18.97 11.36 -62.72 -0.71 -19.68 16 23 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 24 H 0.07 0.70 7.65 -2.39 -0.02 0.68 16 25 H 0.12 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.18 2.09 6.26 -2.91 -0.02 2.07 16 27 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 28 H 0.14 4.45 6.47 -2.91 -0.02 4.43 16 29 H 0.08 3.89 6.07 -2.39 -0.01 3.88 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.40 12.38 9.06 -74.06 -0.67 11.71 16 Total: -1.00 -73.54 284.41 4.86 -68.67 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.47 Total: 11.90 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.39 Total: -22.20 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.24 Total: -50.73 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -1.27 Total: -54.93 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.54 4.86 -68.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031990380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.649 kcal (2) G-P(sol) polarization free energy of solvation -73.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds