Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36003 * 117.00342 * 2 1 4 4 C 1.38035 * 119.98710 * 0.02562 * 3 2 1 5 5 C 1.40028 * 119.82593 * 179.97438 * 4 3 2 6 6 C 1.46868 * 120.09907 * 179.97438 * 5 4 3 7 7 O 1.21293 * 119.99693 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99993 * 179.97438 * 6 5 4 9 9 H 1.09006 * 109.46977 * 329.99894 * 8 6 5 10 10 C 1.53006 * 109.46950 * 89.99441 * 8 6 5 11 11 C 1.50697 * 109.47069 * 209.99748 * 8 6 5 12 12 H 1.08001 * 119.99548 * 359.97438 * 11 8 6 13 13 C 1.37877 * 119.99965 * 180.02562 * 11 8 6 14 14 N 1.31510 * 120.00055 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99806 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46977 * 59.99425 * 15 13 11 17 17 H 1.48497 * 109.47049 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47283 * 299.99696 * 15 13 11 19 19 C 1.40016 * 119.80831 * 359.97438 * 5 4 3 20 20 C 1.37675 * 119.97239 * 0.02562 * 19 5 4 21 21 C 1.38923 * 120.17756 * 359.97438 * 20 19 5 22 22 O 1.35751 * 119.90181 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47190 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46921 * 299.99876 * 1 2 3 25 25 H 1.08998 * 109.47076 * 59.99774 * 1 2 3 26 26 H 1.08008 * 120.08608 * 359.70461 * 4 3 2 27 27 H 1.08998 * 109.47493 * 299.99949 * 10 8 6 28 28 H 1.09000 * 109.46913 * 59.99942 * 10 8 6 29 29 H 1.09004 * 109.46936 * 179.97438 * 10 8 6 30 30 H 0.97003 * 120.00114 * 180.02562 * 14 13 11 31 31 H 1.08000 * 120.01400 * 179.97438 * 19 5 4 32 32 H 1.08001 * 119.90945 * 179.97438 * 20 19 5 33 33 H 0.96696 * 113.99883 * 270.01753 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2945 2.3693 0.0005 5 6 1.9338 3.6151 0.0011 6 6 1.1396 4.8505 0.0011 7 8 -0.0719 4.7926 0.0001 8 6 1.8299 6.1901 0.0022 9 1 2.7871 6.1051 0.5168 10 6 2.0648 6.6441 -1.4399 11 6 0.9657 7.2000 0.7124 12 1 0.0118 6.9016 1.1216 13 6 1.3924 8.5049 0.8389 14 7 2.5538 8.8683 0.3402 15 14 0.3208 9.7568 1.7186 16 1 0.0928 9.3165 3.1184 17 1 1.0011 11.0768 1.7199 18 1 -0.9831 9.8721 1.0173 19 6 3.3325 3.6797 0.0016 20 6 4.0746 2.5201 0.0011 21 6 3.4394 1.2845 0.0005 22 8 4.1766 0.1446 -0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2159 2.3142 -0.0039 27 1 2.6899 5.9137 -1.9536 28 1 1.1076 6.7290 -1.9545 29 1 2.5637 7.6133 -1.4391 30 1 2.8541 9.7863 0.4295 31 1 3.8290 4.6388 0.0016 32 1 5.1534 2.5711 0.0011 33 1 4.3900 -0.1849 -0.8842 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031994124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = -95.381741 kcal Electronic energy + Delta-G solvation = -17940.315186 eV Core-core repulsion = 14931.917358 eV Total energy + Delta-G solvation = -3008.397828 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39777 -38.60399 -37.73806 -36.01289 -33.84451 -30.91361 -30.28726 -29.48770 -27.32214 -25.22151 -24.07095 -22.27464 -21.70852 -19.25413 -18.57958 -16.99454 -16.59839 -16.13072 -15.89816 -15.34054 -15.01637 -14.67495 -14.07989 -13.99379 -13.68941 -13.39139 -12.59904 -12.54282 -12.15075 -11.88116 -11.57554 -11.50579 -11.06966 -10.97919 -10.76226 -10.70022 -10.56386 -10.26470 -10.10265 -9.03377 -8.74625 -8.59596 -8.34931 -8.05893 -6.07369 -4.12472 0.87907 1.47770 2.99033 3.21585 3.32454 3.35597 3.40606 3.98283 4.21265 4.39496 4.75574 4.94306 5.07188 5.13097 5.25059 5.30160 5.41790 5.48044 5.62650 5.85298 5.97071 6.34006 6.48838 6.60024 6.67437 6.76264 6.86008 6.95983 7.18042 7.45908 7.71185 7.72596 7.96230 8.19914 8.56078 8.91270 9.52292 10.99405 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.034360 B = 0.005445 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.710891 B = 5141.338430 C = 5647.586795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.312 6.312 3 C 0.084 3.916 4 C -0.148 4.148 5 C -0.123 4.123 6 C 0.398 3.602 7 O -0.462 6.462 8 C 0.007 3.993 9 H 0.054 0.946 10 C -0.129 4.129 11 C -0.508 4.508 12 H 0.065 0.935 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.087 4.087 20 C -0.122 4.122 21 C 0.089 3.911 22 O -0.487 6.487 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.140 0.860 27 H 0.014 0.986 28 H 0.032 0.968 29 H 0.095 0.905 30 H 0.262 0.738 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 -14.213 -3.114 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.038 3.962 4 C -0.167 4.167 5 C -0.124 4.124 6 C 0.276 3.724 7 O -0.337 6.337 8 C -0.012 4.012 9 H 0.071 0.929 10 C -0.187 4.187 11 C -0.546 4.546 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.105 4.105 20 C -0.140 4.140 21 C 0.044 3.956 22 O -0.297 6.297 23 H 0.117 0.883 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.841 -14.221 -2.517 14.559 hybrid contribution -0.667 0.709 -0.033 0.974 sum 1.174 -13.512 -2.550 13.801 Atomic orbital electron populations 1.23086 0.78505 1.03720 1.01801 1.86100 1.21194 1.26136 1.89098 1.19299 0.91683 0.84789 1.00411 1.21471 1.00800 0.90996 1.03397 1.21018 0.94944 0.95155 1.01299 1.23376 0.88748 0.90766 0.69543 1.90362 1.17030 1.89978 1.36348 1.19153 0.97443 0.88629 0.95995 0.92853 1.21683 0.99546 1.02739 0.94732 1.21011 1.04550 0.93511 1.35532 0.91686 1.24920 0.95186 0.98279 0.95507 1.69843 1.19489 1.18323 1.45462 0.86539 0.80542 0.80067 0.80215 1.20192 1.21221 1.20143 1.21534 0.92735 0.99080 0.97199 1.21234 1.00704 0.90590 1.01510 1.17966 0.86015 0.86512 1.05110 1.84807 1.72124 1.39604 1.33126 0.88276 0.92452 0.92534 0.84224 0.96650 0.94879 0.88645 0.92768 0.83438 0.84270 0.75971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.38 10.28 -34.42 -0.35 -4.73 16 3 C 0.08 1.29 6.69 -39.19 -0.26 1.02 16 4 C -0.15 -2.49 8.58 -38.99 -0.33 -2.82 16 5 C -0.12 -2.29 5.87 -105.07 -0.62 -2.91 16 6 C 0.40 8.96 6.16 -30.82 -0.19 8.77 16 7 O -0.46 -11.44 15.94 5.55 0.09 -11.35 16 8 C 0.01 0.16 2.07 -92.92 -0.19 -0.03 16 9 H 0.05 1.30 6.46 -51.93 -0.34 0.97 16 10 C -0.13 -2.99 8.95 37.16 0.33 -2.66 16 11 C -0.51 -14.11 8.32 -34.44 -0.29 -14.40 16 12 H 0.06 1.88 7.14 -52.49 -0.37 1.50 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -24.58 11.32 55.43 0.63 -23.95 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.09 -1.42 9.35 -39.12 -0.37 -1.78 16 20 C -0.12 -1.69 9.96 -39.53 -0.39 -2.09 16 21 C 0.09 1.29 6.73 -38.86 -0.26 1.03 16 22 O -0.49 -6.11 13.26 -33.63 -0.45 -6.56 16 23 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 25 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 26 H 0.14 2.28 5.87 -52.48 -0.31 1.98 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.15 2.36 6.34 -52.49 -0.33 2.03 16 32 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.38 2.93 9.06 45.56 0.41 3.34 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -31.63 286.48 -5.33 -36.96 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -2.87 Total: 1.95 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.67 Total: -13.02 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.63 Total: -23.95 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.71 Total: -22.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.63 -5.33 -36.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031994124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.421 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds