Wall clock time and date at job start Mon Mar 30 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36003 * 117.00342 * 2 1 4 4 C 1.38035 * 119.98710 * 0.02562 * 3 2 1 5 5 C 1.40028 * 119.82593 * 179.97438 * 4 3 2 6 6 C 1.46868 * 120.09907 * 179.97438 * 5 4 3 7 7 O 1.21293 * 119.99693 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99993 * 179.97438 * 6 5 4 9 9 H 1.09006 * 109.46977 * 329.99894 * 8 6 5 10 10 C 1.53006 * 109.46950 * 89.99441 * 8 6 5 11 11 C 1.50697 * 109.47069 * 209.99748 * 8 6 5 12 12 H 1.08001 * 119.99548 * 359.97438 * 11 8 6 13 13 C 1.37877 * 119.99965 * 180.02562 * 11 8 6 14 14 N 1.31510 * 120.00055 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99806 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46977 * 59.99425 * 15 13 11 17 17 H 1.48497 * 109.47049 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47283 * 299.99696 * 15 13 11 19 19 C 1.40016 * 119.80831 * 359.97438 * 5 4 3 20 20 C 1.37675 * 119.97239 * 0.02562 * 19 5 4 21 21 C 1.38923 * 120.17756 * 359.97438 * 20 19 5 22 22 O 1.35751 * 119.90181 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47190 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46921 * 299.99876 * 1 2 3 25 25 H 1.08998 * 109.47076 * 59.99774 * 1 2 3 26 26 H 1.08008 * 120.08608 * 359.70461 * 4 3 2 27 27 H 1.08998 * 109.47493 * 299.99949 * 10 8 6 28 28 H 1.09000 * 109.46913 * 59.99942 * 10 8 6 29 29 H 1.09004 * 109.46936 * 179.97438 * 10 8 6 30 30 H 0.97003 * 120.00114 * 180.02562 * 14 13 11 31 31 H 1.08000 * 120.01400 * 179.97438 * 19 5 4 32 32 H 1.08001 * 119.90945 * 179.97438 * 20 19 5 33 33 H 0.96696 * 113.99883 * 270.01753 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2945 2.3693 0.0005 5 6 1.9338 3.6151 0.0011 6 6 1.1396 4.8505 0.0011 7 8 -0.0719 4.7926 0.0001 8 6 1.8299 6.1901 0.0022 9 1 2.7871 6.1051 0.5168 10 6 2.0648 6.6441 -1.4399 11 6 0.9657 7.2000 0.7124 12 1 0.0118 6.9016 1.1216 13 6 1.3924 8.5049 0.8389 14 7 2.5538 8.8683 0.3402 15 14 0.3208 9.7568 1.7186 16 1 0.0928 9.3165 3.1184 17 1 1.0011 11.0768 1.7199 18 1 -0.9831 9.8721 1.0173 19 6 3.3325 3.6797 0.0016 20 6 4.0746 2.5201 0.0011 21 6 3.4394 1.2845 0.0005 22 8 4.1766 0.1446 -0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2159 2.3142 -0.0039 27 1 2.6899 5.9137 -1.9536 28 1 1.1076 6.7290 -1.9545 29 1 2.5637 7.6133 -1.4391 30 1 2.8541 9.7863 0.4295 31 1 3.8290 4.6388 0.0016 32 1 5.1534 2.5711 0.0011 33 1 4.3900 -0.1849 -0.8842 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031994124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:49 Heat of formation + Delta-G solvation = -116.514233 kcal Electronic energy + Delta-G solvation = -17941.231560 eV Core-core repulsion = 14931.917358 eV Total energy + Delta-G solvation = -3009.314202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60993 -40.20090 -38.79740 -37.25415 -35.83973 -32.78523 -31.50585 -30.81380 -28.34169 -27.27171 -25.58204 -23.63362 -23.09620 -20.77768 -19.69008 -18.45045 -18.34383 -17.48692 -16.99319 -16.84854 -16.62082 -16.03335 -15.54265 -15.33087 -15.11369 -14.91825 -14.43320 -13.73213 -13.58053 -13.23323 -13.13595 -12.94823 -12.69044 -12.63089 -12.50375 -12.24037 -12.09997 -12.06060 -11.62150 -11.04940 -10.57168 -10.23145 -9.96333 -9.24359 -8.15723 -6.27849 -0.44770 0.28502 1.40906 1.41761 1.47666 1.52370 2.20400 2.41188 2.66111 3.09022 3.13540 3.29216 3.79864 4.04527 4.14388 4.30264 4.31034 4.49108 4.53706 4.67283 4.69316 4.77401 4.95502 5.03637 5.08832 5.17997 5.32314 5.48441 5.57460 5.69782 5.94414 6.15374 6.21386 6.73460 6.82387 6.84290 7.39316 8.89226 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.034360 B = 0.005445 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.710891 B = 5141.338430 C = 5647.586795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.317 6.317 3 C 0.079 3.921 4 C -0.151 4.151 5 C -0.151 4.151 6 C 0.400 3.600 7 O -0.499 6.499 8 C 0.000 4.000 9 H 0.053 0.947 10 C -0.118 4.118 11 C -0.537 4.537 12 H 0.042 0.958 13 C 0.024 3.976 14 N -0.906 5.906 15 Si 0.953 3.047 16 H -0.274 1.274 17 H -0.274 1.274 18 H -0.278 1.278 19 C -0.086 4.086 20 C -0.111 4.111 21 C 0.106 3.894 22 O -0.490 6.490 23 H 0.131 0.869 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.136 0.864 27 H 0.047 0.953 28 H 0.019 0.981 29 H 0.076 0.924 30 H 0.266 0.734 31 H 0.147 0.853 32 H 0.174 0.826 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 -15.663 -3.189 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.033 3.967 4 C -0.170 4.170 5 C -0.153 4.153 6 C 0.281 3.719 7 O -0.377 6.377 8 C -0.018 4.018 9 H 0.070 0.930 10 C -0.176 4.176 11 C -0.575 4.575 12 H 0.061 0.939 13 C -0.176 4.176 14 N -0.545 5.545 15 Si 0.778 3.222 16 H -0.199 1.199 17 H -0.198 1.198 18 H -0.204 1.204 19 C -0.104 4.104 20 C -0.129 4.129 21 C 0.060 3.940 22 O -0.303 6.303 23 H 0.149 0.851 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.154 0.846 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.165 0.835 32 H 0.191 0.809 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.102 -15.687 -2.614 16.203 hybrid contribution -0.990 1.010 -0.025 1.414 sum 2.111 -14.678 -2.639 15.062 Atomic orbital electron populations 1.23354 0.76853 1.05824 1.01767 1.86097 1.22891 1.25265 1.88866 1.19402 0.92308 0.84722 1.00251 1.21414 1.00852 0.91021 1.03667 1.20625 0.95628 0.93809 1.05199 1.23353 0.88436 0.91727 0.68339 1.90332 1.18350 1.90493 1.38538 1.19146 0.96964 0.89491 0.96243 0.92961 1.21514 0.99140 1.02613 0.94329 1.21210 1.04429 0.95077 1.36737 0.93926 1.25560 0.96373 0.99621 0.96045 1.69918 1.20176 1.18802 1.45589 0.85692 0.78966 0.78389 0.79106 1.19948 1.19832 1.20368 1.21558 0.91723 1.00143 0.96976 1.21486 1.02156 0.89332 0.99939 1.18087 0.85792 0.87326 1.02806 1.84742 1.71501 1.38718 1.35360 0.85116 0.92848 0.92273 0.84619 0.93379 0.96218 0.90548 0.92437 0.83533 0.80868 0.72967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -8.23 10.28 -79.56 -0.82 -9.04 16 3 C 0.08 2.28 6.69 22.52 0.15 2.43 16 4 C -0.15 -5.02 8.58 22.66 0.19 -4.82 16 5 C -0.15 -5.64 5.87 -20.15 -0.12 -5.76 16 6 C 0.40 18.56 6.16 27.95 0.17 18.73 16 7 O -0.50 -25.75 15.94 -3.07 -0.05 -25.80 16 8 C 0.00 0.02 2.07 -12.28 -0.03 -0.01 16 9 H 0.05 2.60 6.46 -2.38 -0.02 2.58 16 10 C -0.12 -5.54 8.95 71.98 0.64 -4.90 16 11 C -0.54 -30.68 8.32 25.60 0.21 -30.47 16 12 H 0.04 2.57 7.14 -2.91 -0.02 2.55 16 13 C 0.02 1.32 5.30 84.66 0.45 1.77 16 14 N -0.91 -50.10 11.32 21.45 0.24 -49.86 16 15 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 19 C -0.09 -2.66 9.35 22.57 0.21 -2.45 16 20 C -0.11 -2.73 9.96 22.30 0.22 -2.51 16 21 C 0.11 2.72 6.73 22.73 0.15 2.87 16 22 O -0.49 -10.33 13.26 -76.74 -1.02 -11.35 16 23 H 0.13 1.68 8.14 -2.39 -0.02 1.67 16 24 H 0.05 1.09 7.66 -2.39 -0.02 1.07 16 25 H 0.06 1.13 7.65 -2.39 -0.02 1.11 16 26 H 0.14 4.52 5.87 -2.91 -0.02 4.50 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 3.87 6.07 -2.38 -0.01 3.86 16 30 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.15 4.53 6.34 -2.91 -0.02 4.51 16 32 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.41 4.44 9.06 -74.06 -0.67 3.77 16 Total: -1.00 -68.49 286.48 4.24 -64.25 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.47 Total: 9.25 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 3.38 Total: -23.67 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.24 Total: -49.86 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -1.88 Total: -46.19 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.49 4.24 -64.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031994124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.267 kcal (2) G-P(sol) polarization free energy of solvation -68.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds