Wall clock time and date at job start Mon Mar 30 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35985 * 117.00136 * 2 1 4 4 C 1.39039 * 119.88921 * 0.02562 * 3 2 1 5 5 C 1.38031 * 120.40475 * 180.02562 * 4 3 2 6 6 C 1.38666 * 120.16893 * 359.95084 * 5 4 3 7 7 O 1.35672 * 120.11022 * 180.29945 * 6 5 4 8 8 C 1.42901 * 116.99983 * 359.72276 * 7 6 5 9 9 C 1.40395 * 119.77168 * 0.02562 * 6 5 4 10 10 C 1.46788 * 120.19484 * 180.02562 * 9 6 5 11 11 O 1.21300 * 119.99937 * 359.97438 * 10 9 6 12 12 C 1.50694 * 120.00094 * 180.02562 * 10 9 6 13 13 C 1.50700 * 109.47283 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00064 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99910 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00539 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47033 * 59.99754 * 17 15 13 19 19 H 1.48494 * 109.47160 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46840 * 300.00076 * 17 15 13 21 21 C 1.38123 * 119.88360 * 179.97438 * 3 2 1 22 22 H 1.08999 * 109.46441 * 59.99872 * 1 2 3 23 23 H 1.08998 * 109.47403 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47305 * 300.00360 * 1 2 3 25 25 H 1.08003 * 119.79479 * 359.97438 * 4 3 2 26 26 H 1.07998 * 119.91121 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.46944 * 180.02562 * 8 7 6 28 28 H 1.08999 * 109.47529 * 299.99973 * 8 7 6 29 29 H 1.08999 * 109.47006 * 60.00133 * 8 7 6 30 30 H 1.09004 * 109.47288 * 300.00262 * 12 10 9 31 31 H 1.08997 * 109.47274 * 59.99679 * 12 10 9 32 32 H 0.96996 * 120.00334 * 180.02562 * 16 15 13 33 33 H 1.07997 * 120.09475 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2869 2.3762 0.0005 5 6 1.9025 3.6117 0.0000 6 6 3.2863 3.7008 0.0000 7 8 3.8901 4.9157 0.0056 8 6 3.0387 6.0633 0.0052 9 6 4.0603 2.5294 -0.0001 10 6 5.5258 2.6129 0.0004 11 8 6.0716 3.6962 0.0004 12 6 6.3523 1.3528 -0.0002 13 6 7.8159 1.7120 0.0011 14 1 8.1174 2.7491 0.0019 15 6 8.7699 0.7167 0.0014 16 7 8.4028 -0.5462 0.0009 17 14 10.5842 1.1618 0.0038 18 1 10.8967 1.9587 1.2172 19 1 11.3985 -0.0799 0.0043 20 1 10.8994 1.9607 -1.2077 21 6 3.4259 1.2811 0.0005 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.2087 2.3138 0.0005 26 1 1.3048 4.5112 0.0000 27 1 3.6475 6.9674 0.0096 28 1 2.4131 6.0514 -0.8873 29 1 2.4060 6.0466 0.8926 30 1 6.1216 0.7665 0.8893 31 1 6.1222 0.7678 -0.8906 32 1 9.0741 -1.2464 0.0015 33 1 4.0138 0.3751 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036275876.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:30 Heat of formation + Delta-G solvation = -107.301280 kcal Electronic energy + Delta-G solvation = -17843.374677 eV Core-core repulsion = 14834.459979 eV Total energy + Delta-G solvation = -3008.914698 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63584 -40.09597 -39.48764 -37.17437 -35.11365 -32.85902 -30.82198 -30.72360 -28.27698 -27.74197 -26.19144 -24.29129 -22.81083 -20.83670 -19.11554 -18.52751 -18.33585 -17.70798 -16.85694 -16.74189 -16.40670 -16.20524 -15.60910 -15.55262 -15.48242 -15.08800 -14.21142 -13.91637 -13.71570 -13.55842 -13.22084 -13.13354 -12.81976 -12.56765 -12.47979 -12.41549 -12.06100 -11.87158 -11.42928 -11.33741 -10.62695 -10.22375 -10.13918 -8.77802 -8.24009 -6.33207 -0.33099 0.38764 1.38761 1.42623 1.51249 1.61615 2.30896 2.40362 2.47475 2.74262 3.10097 3.35283 3.68370 3.93222 4.09949 4.24908 4.38295 4.41380 4.48536 4.49344 4.62663 4.71605 4.80471 4.81801 4.91254 5.07611 5.16272 5.26427 5.27170 5.46847 5.71261 6.11978 6.37979 6.53892 6.77603 6.93640 7.35437 8.88061 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.006206 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.129857 B = 4510.508364 C = 5761.889822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.337 6.337 3 C 0.074 3.926 4 C -0.123 4.123 5 C -0.175 4.175 6 C 0.130 3.870 7 O -0.322 6.322 8 C 0.012 3.988 9 C -0.187 4.187 10 C 0.391 3.609 11 O -0.477 6.477 12 C -0.016 4.016 13 C -0.546 4.546 14 H 0.056 0.944 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.271 1.271 21 C -0.080 4.080 22 H 0.070 0.930 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.177 0.823 26 H 0.175 0.825 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.268 0.732 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.150 6.150 0.000 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.252 6.252 3 C 0.029 3.971 4 C -0.141 4.141 5 C -0.193 4.193 6 C 0.083 3.917 7 O -0.235 6.235 8 C -0.082 4.082 9 C -0.189 4.189 10 C 0.271 3.729 11 O -0.354 6.354 12 C -0.053 4.053 13 C -0.583 4.583 14 H 0.074 0.926 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.790 3.210 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.196 1.196 21 C -0.099 4.099 22 H 0.089 0.911 23 H 0.134 0.866 24 H 0.089 0.911 25 H 0.194 0.806 26 H 0.192 0.808 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.519 6.407 0.002 21.495 hybrid contribution 0.818 -0.017 -0.002 0.818 sum -19.701 6.389 0.000 20.711 Atomic orbital electron populations 1.23405 0.76148 1.05712 1.02607 1.86114 1.23730 1.25986 1.89368 1.18742 0.91233 0.85754 1.01390 1.21604 1.01843 0.90179 1.00494 1.21352 0.91290 1.00358 1.06341 1.19416 0.91973 0.84883 0.95425 1.86323 1.36969 1.12808 1.87394 1.23453 0.96025 0.85898 1.02847 1.19993 0.94623 0.92304 1.11989 1.22961 0.88444 0.91344 0.70120 1.90369 1.75346 1.32330 1.37395 1.19384 0.94822 0.92602 0.98448 1.21406 0.91832 0.93485 1.51607 0.92624 1.25848 1.04092 0.94681 0.94317 1.70043 1.35638 0.99819 1.50980 0.85489 0.78687 0.77809 0.78979 1.19630 1.19713 1.19616 1.20572 0.92982 0.96558 0.99740 0.91146 0.86623 0.91137 0.80555 0.80820 0.87387 0.90704 0.90684 0.94021 0.94016 0.92349 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -8.73 10.49 -93.38 -0.98 -9.70 16 3 C 0.07 2.11 6.67 22.43 0.15 2.26 16 4 C -0.12 -2.63 9.02 22.41 0.20 -2.42 16 5 C -0.18 -4.10 9.02 22.32 0.20 -3.90 16 6 C 0.13 4.48 6.70 22.90 0.15 4.63 16 7 O -0.32 -11.45 8.56 -68.91 -0.59 -12.04 16 8 C 0.01 0.24 9.81 113.37 1.11 1.35 16 9 C -0.19 -7.75 5.88 -20.08 -0.12 -7.87 16 10 C 0.39 20.17 7.10 27.92 0.20 20.37 16 11 O -0.48 -26.92 14.26 17.89 0.26 -26.66 16 12 C -0.02 -0.89 4.07 29.10 0.12 -0.77 16 13 C -0.55 -34.01 8.92 25.60 0.23 -33.78 16 14 H 0.06 3.58 6.75 -2.91 -0.02 3.56 16 15 C 0.01 0.55 5.46 84.65 0.46 1.01 16 16 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 17 Si 0.97 46.98 29.54 68.60 2.03 49.01 16 18 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 21 C -0.08 -2.93 9.40 22.68 0.21 -2.72 16 22 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 23 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 25 H 0.18 2.11 6.27 -2.91 -0.02 2.09 16 26 H 0.17 2.55 6.29 -2.91 -0.02 2.53 16 27 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 1.17 7.67 -2.39 -0.02 1.15 16 29 H 0.07 1.17 7.65 -2.39 -0.02 1.15 16 30 H 0.04 2.40 8.08 -2.38 -0.02 2.38 16 31 H 0.04 2.40 8.09 -2.39 -0.02 2.39 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.13 5.25 7.05 -2.91 -0.02 5.23 16 Total: -1.00 -79.15 287.07 6.15 -73.00 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.12 Total: 3.39 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 4.03 Total: -20.51 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.28 Total: -56.48 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -1.31 Total: -48.41 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -79.15 6.15 -73.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036275876.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.299 kcal (2) G-P(sol) polarization free energy of solvation -79.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds