Wall clock time and date at job start Mon Mar 30 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00344 * 2 1 4 4 H 1.48503 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46948 * 299.99655 * 3 2 1 6 6 H 1.48499 * 109.47459 * 59.99779 * 3 2 1 7 7 C 1.37874 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46784 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46628 * 179.97438 * 10 9 7 12 12 O 1.42908 * 109.46629 * 179.97438 * 11 10 9 13 13 C 1.35638 * 116.99244 * 179.97438 * 12 11 10 14 14 C 1.38702 * 120.15986 * 0.02562 * 13 12 11 15 15 C 1.38060 * 120.08999 * 180.02562 * 14 13 12 16 16 C 1.38557 * 120.40270 * 359.95400 * 15 14 13 17 17 C 1.37765 * 120.31024 * 359.97438 * 16 15 14 18 18 C 1.39768 * 119.90177 * 0.02655 * 17 16 15 19 19 C 1.47397 * 120.19768 * 179.97438 * 18 17 16 20 20 O 1.21508 * 119.99935 * 179.97438 * 19 18 17 21 21 O 1.34749 * 120.00301 * 359.97438 * 19 18 17 22 22 H 0.97006 * 119.99737 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47181 * 59.99770 * 9 7 2 24 24 H 1.09001 * 109.46748 * 299.99256 * 9 7 2 25 25 H 1.08996 * 109.47507 * 59.99899 * 10 9 7 26 26 H 1.09001 * 109.46813 * 299.99146 * 10 9 7 27 27 H 1.08996 * 109.47233 * 59.99763 * 11 10 9 28 28 H 1.08993 * 109.47007 * 299.99428 * 11 10 9 29 29 H 1.07999 * 119.96005 * 0.02562 * 14 13 12 30 30 H 1.08003 * 119.79445 * 179.97438 * 15 14 13 31 31 H 1.08001 * 119.84975 * 180.02562 * 16 15 14 32 32 H 1.08004 * 120.05205 * 179.74518 * 17 16 15 33 33 H 0.96694 * 117.00765 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4799 -4.9871 0.0025 12 8 2.4086 -6.0733 0.0031 13 6 1.8900 -7.3267 0.0042 14 6 0.5154 -7.5120 0.0042 15 6 -0.0109 -8.7884 0.0060 16 6 0.8266 -9.8922 0.0067 17 6 2.1943 -9.7272 0.0052 18 6 2.7410 -8.4409 0.0035 19 6 4.2034 -8.2568 0.0025 20 8 4.6748 -7.1369 0.0005 21 8 5.0177 -9.3305 0.0037 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5570 -0.8896 24 1 0.6239 -2.5567 0.8904 25 1 2.8711 -3.6040 0.8922 26 1 2.8723 -3.6048 -0.8878 27 1 0.8536 -5.0455 -0.8877 28 1 0.8530 -5.0442 0.8922 29 1 -0.1442 -6.6568 0.0029 30 1 -1.0820 -8.9272 0.0064 31 1 0.4052 -10.8866 0.0076 32 1 2.8432 -10.5906 0.0100 33 1 5.9694 -9.1597 0.0034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037207736.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:38 Heat of formation + Delta-G solvation = -118.935565 kcal Electronic energy + Delta-G solvation = -17347.373717 eV Core-core repulsion = 14337.954518 eV Total energy + Delta-G solvation = -3009.419199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.64163 -39.30194 -37.45754 -35.93530 -34.03431 -31.91007 -31.44496 -29.94253 -26.99878 -24.66620 -23.81751 -21.93192 -21.34008 -20.12944 -18.30136 -17.86555 -16.91106 -16.30522 -16.02136 -15.56522 -15.35195 -14.95039 -14.56099 -14.39499 -13.46172 -13.41409 -13.13728 -12.30302 -12.26460 -12.04974 -11.69506 -11.47662 -11.44115 -11.06839 -10.70121 -10.61634 -10.55372 -10.29328 -9.76426 -9.53001 -9.25771 -9.14389 -8.38641 -8.30653 -6.03750 -4.05844 0.64014 1.28985 2.59860 3.01663 3.30939 3.31764 3.38531 3.44492 3.67290 4.45198 4.66318 4.69999 4.94110 5.06633 5.28127 5.32751 5.46335 5.49268 5.52006 5.70578 5.95032 6.02367 6.16499 6.27067 6.49691 6.50401 6.57079 6.73276 7.00116 7.51056 7.61033 7.71264 7.95308 7.98890 8.37534 9.00615 9.58624 11.07872 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.033215 B = 0.004170 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.792994 B = 6712.421874 C = 7529.465885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.025 3.975 10 C -0.107 4.107 11 C 0.052 3.948 12 O -0.282 6.282 13 C 0.203 3.797 14 C -0.226 4.226 15 C -0.040 4.040 16 C -0.185 4.185 17 C -0.025 4.025 18 C -0.176 4.176 19 C 0.521 3.479 20 O -0.488 6.488 21 O -0.521 6.521 22 H 0.260 0.740 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.140 0.860 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -21.436 0.018 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.145 4.145 11 C -0.022 4.022 12 O -0.193 6.193 13 C 0.154 3.846 14 C -0.244 4.244 15 C -0.059 4.059 16 C -0.203 4.203 17 C -0.043 4.043 18 C -0.178 4.178 19 C 0.364 3.636 20 O -0.375 6.375 21 O -0.334 6.334 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.785 -20.966 0.018 21.041 hybrid contribution 0.701 1.089 0.000 1.295 sum 2.486 -19.876 0.018 20.031 Atomic orbital electron populations 1.69972 1.06078 1.26610 1.50912 1.25016 0.94879 0.99356 0.95193 0.86493 0.80193 0.83521 0.77580 1.19631 1.20970 1.20965 1.21237 0.93260 0.90686 1.50580 0.92349 1.19060 0.93806 0.90891 0.97478 1.21715 0.99820 0.90610 1.02320 1.23380 0.92310 0.85532 1.01026 1.86376 1.36639 1.11295 1.84982 1.19165 0.91237 0.85272 0.88953 1.21388 0.93544 0.99374 1.10120 1.21232 1.00263 0.91719 0.92648 1.20987 0.93110 0.99169 1.07016 1.21264 0.95507 0.95180 0.92388 1.18371 0.88902 0.92704 1.17827 1.20601 0.87599 0.82012 0.73341 1.90999 1.76891 1.25142 1.44502 1.84524 1.23282 1.38906 1.86702 0.92998 0.96306 0.96315 0.92042 0.92036 0.92002 0.91993 0.84057 0.85154 0.85262 0.84187 0.73084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.33 5.52 -26.73 -0.15 -2.47 16 11 C 0.05 0.93 4.74 37.16 0.18 1.11 16 12 O -0.28 -5.22 8.21 -40.50 -0.33 -5.55 16 13 C 0.20 3.14 6.70 -38.67 -0.26 2.88 16 14 C -0.23 -2.86 9.03 -39.48 -0.36 -3.22 16 15 C -0.04 -0.40 10.03 -39.53 -0.40 -0.80 16 16 C -0.18 -1.69 10.02 -39.64 -0.40 -2.09 16 17 C -0.03 -0.26 9.61 -39.18 -0.38 -0.64 16 18 C -0.18 -2.45 5.89 -104.86 -0.62 -3.07 16 19 C 0.52 7.57 8.26 34.46 0.28 7.85 16 20 O -0.49 -9.06 15.95 -26.60 -0.42 -9.48 16 21 O -0.52 -5.28 12.68 -40.62 -0.52 -5.80 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.06 1.03 7.66 -51.93 -0.40 0.64 16 28 H 0.06 1.03 7.66 -51.93 -0.40 0.64 16 29 H 0.14 1.70 6.30 -52.49 -0.33 1.37 16 30 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.14 1.15 7.61 -52.48 -0.40 0.75 16 33 H 0.41 2.40 9.11 45.56 0.42 2.81 16 LS Contribution 293.41 15.07 4.42 4.42 Total: -1.00 -33.99 293.41 -6.96 -40.96 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.19 Total: -1.64 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.64 Total: -13.62 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.27 Total: -20.83 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.99 -6.96 -40.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037207736.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.979 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds