Wall clock time and date at job start Mon Mar 30 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00344 * 2 1 4 4 H 1.48503 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46948 * 299.99655 * 3 2 1 6 6 H 1.48499 * 109.47459 * 59.99779 * 3 2 1 7 7 C 1.37874 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46784 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46628 * 179.97438 * 10 9 7 12 12 O 1.42908 * 109.46629 * 179.97438 * 11 10 9 13 13 C 1.35638 * 116.99244 * 179.97438 * 12 11 10 14 14 C 1.38702 * 120.15986 * 0.02562 * 13 12 11 15 15 C 1.38060 * 120.08999 * 180.02562 * 14 13 12 16 16 C 1.38557 * 120.40270 * 359.95400 * 15 14 13 17 17 C 1.37765 * 120.31024 * 359.97438 * 16 15 14 18 18 C 1.39768 * 119.90177 * 0.02655 * 17 16 15 19 19 C 1.47397 * 120.19768 * 179.97438 * 18 17 16 20 20 O 1.21508 * 119.99935 * 179.97438 * 19 18 17 21 21 O 1.34749 * 120.00301 * 359.97438 * 19 18 17 22 22 H 0.97006 * 119.99737 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47181 * 59.99770 * 9 7 2 24 24 H 1.09001 * 109.46748 * 299.99256 * 9 7 2 25 25 H 1.08996 * 109.47507 * 59.99899 * 10 9 7 26 26 H 1.09001 * 109.46813 * 299.99146 * 10 9 7 27 27 H 1.08996 * 109.47233 * 59.99763 * 11 10 9 28 28 H 1.08993 * 109.47007 * 299.99428 * 11 10 9 29 29 H 1.07999 * 119.96005 * 0.02562 * 14 13 12 30 30 H 1.08003 * 119.79445 * 179.97438 * 15 14 13 31 31 H 1.08001 * 119.84975 * 180.02562 * 16 15 14 32 32 H 1.08004 * 120.05205 * 179.74518 * 17 16 15 33 33 H 0.96694 * 117.00765 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4799 -4.9871 0.0025 12 8 2.4086 -6.0733 0.0031 13 6 1.8900 -7.3267 0.0042 14 6 0.5154 -7.5120 0.0042 15 6 -0.0109 -8.7884 0.0060 16 6 0.8266 -9.8922 0.0067 17 6 2.1943 -9.7272 0.0052 18 6 2.7410 -8.4409 0.0035 19 6 4.2034 -8.2568 0.0025 20 8 4.6748 -7.1369 0.0005 21 8 5.0177 -9.3305 0.0037 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5570 -0.8896 24 1 0.6239 -2.5567 0.8904 25 1 2.8711 -3.6040 0.8922 26 1 2.8723 -3.6048 -0.8878 27 1 0.8536 -5.0455 -0.8877 28 1 0.8530 -5.0442 0.8922 29 1 -0.1442 -6.6568 0.0029 30 1 -1.0820 -8.9272 0.0064 31 1 0.4052 -10.8866 0.0076 32 1 2.8432 -10.5906 0.0100 33 1 5.9694 -9.1597 0.0034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037207736.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:38 Heat of formation + Delta-G solvation = -140.726866 kcal Electronic energy + Delta-G solvation = -17348.318658 eV Core-core repulsion = 14337.954518 eV Total energy + Delta-G solvation = -3010.364141 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.69511 -40.41186 -38.52104 -36.97816 -36.00023 -33.76216 -32.46790 -30.98944 -28.82353 -25.63166 -25.53467 -23.25361 -22.39552 -21.74486 -19.36268 -18.94425 -18.53423 -17.79337 -17.34597 -16.70897 -16.52605 -16.51292 -15.76879 -15.42285 -15.04125 -14.73378 -14.20734 -14.08107 -13.67182 -13.52716 -12.88293 -12.84261 -12.63874 -12.52257 -12.40239 -12.24996 -12.09103 -11.59322 -11.53530 -11.44637 -11.25816 -10.59228 -10.15292 -9.31531 -8.24471 -6.35127 -0.29178 0.38319 1.39005 1.39189 1.53114 1.58718 2.06981 2.13999 2.40788 2.76303 3.09221 3.74987 3.82892 3.98717 4.07655 4.15800 4.24685 4.40957 4.44254 4.55051 4.76947 4.87388 4.91204 5.04163 5.18273 5.31985 5.44191 5.44952 5.62332 5.62490 5.75912 5.77799 6.17550 6.34988 6.79237 7.04174 7.34021 8.87709 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.033215 B = 0.004170 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.792994 B = 6712.421874 C = 7529.465885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.096 4.096 11 C 0.065 3.935 12 O -0.311 6.311 13 C 0.164 3.836 14 C -0.237 4.237 15 C -0.032 4.032 16 C -0.169 4.169 17 C -0.019 4.019 18 C -0.199 4.199 19 C 0.524 3.476 20 O -0.542 6.542 21 O -0.503 6.503 22 H 0.266 0.734 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -23.517 0.022 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.009 4.009 12 O -0.223 6.223 13 C 0.116 3.884 14 C -0.255 4.255 15 C -0.050 4.050 16 C -0.186 4.186 17 C -0.037 4.037 18 C -0.201 4.201 19 C 0.370 3.630 20 O -0.434 6.434 21 O -0.317 6.317 22 H 0.075 0.925 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.183 0.817 31 H 0.188 0.812 32 H 0.184 0.816 33 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 1.340 -23.101 0.022 23.140 hybrid contribution 0.815 1.519 -0.002 1.724 sum 2.155 -21.582 0.021 21.689 Atomic orbital electron populations 1.70076 1.07587 1.27905 1.51331 1.25919 0.95833 1.03179 0.94455 0.85387 0.78872 0.78689 0.78041 1.19096 1.20023 1.20011 1.21640 0.93472 0.92332 1.51139 0.92653 1.18902 0.93983 0.91848 0.95837 1.21415 0.98832 0.91762 1.01350 1.23011 0.91612 0.84311 1.01982 1.86288 1.37045 1.12570 1.86444 1.19558 0.92854 0.84236 0.91705 1.21540 0.92373 1.01003 1.10633 1.21683 1.02251 0.90560 0.90519 1.21502 0.92324 1.00780 1.04021 1.21617 0.96752 0.94261 0.91029 1.18658 0.88577 0.93786 1.19057 1.20859 0.88389 0.81838 0.71961 1.90975 1.77854 1.27226 1.47306 1.84470 1.24688 1.36883 1.85706 0.92537 0.97834 0.97843 0.92965 0.92963 0.91046 0.91034 0.84132 0.81735 0.81175 0.81609 0.70859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.10 -4.37 5.52 30.60 0.17 -4.21 16 11 C 0.07 2.45 4.74 71.98 0.34 2.79 16 12 O -0.31 -12.02 8.21 -68.59 -0.56 -12.58 16 13 C 0.16 5.11 6.70 22.86 0.15 5.26 16 14 C -0.24 -5.76 9.03 22.34 0.20 -5.56 16 15 C -0.03 -0.53 10.03 22.30 0.22 -0.30 16 16 C -0.17 -2.33 10.02 22.23 0.22 -2.11 16 17 C -0.02 -0.33 9.61 22.53 0.22 -0.12 16 18 C -0.20 -5.40 5.89 -20.02 -0.12 -5.52 16 19 C 0.52 15.24 8.26 70.23 0.58 15.82 16 20 O -0.54 -20.99 15.95 26.81 0.43 -20.56 16 21 O -0.50 -9.46 12.68 -56.59 -0.72 -10.17 16 22 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 23 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.07 2.47 7.66 -2.39 -0.02 2.46 16 28 H 0.07 2.48 7.66 -2.39 -0.02 2.46 16 29 H 0.14 3.32 6.30 -2.91 -0.02 3.30 16 30 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.17 2.04 7.61 -2.91 -0.02 2.02 16 33 H 0.43 4.43 9.11 -74.06 -0.67 3.75 16 Total: -1.00 -76.06 293.41 4.74 -71.32 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 0.45 Total: 4.38 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 2.83 Total: -23.40 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.28 Total: -56.10 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.85 Total: -43.32 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -76.06 4.74 -71.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037207736.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.406 kcal (2) G-P(sol) polarization free energy of solvation -76.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds