Wall clock time and date at job start Mon Mar 30 2020 06:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 C 1.50697 * 109.47343 * 240.00357 * 2 1 3 5 5 H 1.08002 * 119.99988 * 240.00098 * 4 2 1 6 6 C 1.37875 * 120.00402 * 59.99704 * 4 2 1 7 7 N 1.31518 * 119.99648 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47230 * 60.00112 * 8 6 4 10 10 H 1.48503 * 109.47249 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47355 * 300.00016 * 8 6 4 12 12 O 1.42894 * 109.47139 * 119.99982 * 2 1 3 13 13 C 1.35982 * 117.00131 * 63.60795 * 12 2 1 14 14 C 1.38693 * 119.98326 * 2.00457 * 13 12 2 15 15 C 1.38219 * 120.08162 * 179.80768 * 14 13 12 16 16 C 1.38529 * 120.09927 * 0.43585 * 15 14 13 17 17 C 1.39257 * 119.91603 * 359.56317 * 16 15 14 18 18 C 1.38525 * 119.88314 * 0.22503 * 17 16 15 19 19 O 1.36511 * 108.64574 * 180.25434 * 17 16 15 20 20 C 1.43988 * 105.50061 * 342.70193 * 19 17 16 21 21 O 1.36596 * 131.46257 * 179.87671 * 16 15 14 22 22 H 1.08997 * 109.47212 * 306.25195 * 1 2 3 23 23 H 1.09001 * 109.47236 * 66.24987 * 1 2 3 24 24 H 1.08998 * 109.47226 * 186.24958 * 1 2 3 25 25 H 1.09006 * 109.47456 * 176.47233 * 3 2 1 26 26 H 1.09007 * 109.47210 * 296.47478 * 3 2 1 27 27 H 1.08998 * 109.47172 * 56.47282 * 3 2 1 28 28 H 0.97000 * 119.99790 * 179.97438 * 7 6 4 29 29 H 1.08000 * 119.95857 * 0.03278 * 14 13 12 30 30 H 1.08005 * 119.95149 * 180.30632 * 15 14 13 31 31 H 1.08002 * 120.00775 * 180.02562 * 18 17 16 32 32 H 1.08996 * 110.57001 * 268.58713 * 20 19 17 33 33 H 1.08998 * 110.57154 * 145.70729 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8259 -2.5201 -4.0078 10 1 1.8260 -0.4205 -5.2204 11 1 3.8065 -1.1207 -4.0082 12 8 2.0063 -0.6736 1.1667 13 6 1.7043 -1.9943 1.2836 14 6 1.0009 -2.6364 0.2754 15 6 0.6963 -3.9797 0.3903 16 6 1.0849 -4.6862 1.5167 17 6 1.7913 -4.0436 2.5303 18 6 2.0992 -2.6983 2.4110 19 8 2.0587 -4.9482 3.5171 20 6 1.1571 -6.0470 3.2865 21 8 0.9095 -5.9943 1.8690 22 1 -0.3633 0.6077 0.8287 23 1 -0.3634 0.4139 -0.9406 24 1 -0.3633 -1.0215 0.1119 25 1 3.1282 1.4432 0.0632 26 1 1.7291 1.9378 -0.9199 27 1 1.6259 1.9742 0.8567 28 1 0.7087 1.1613 -3.4844 29 1 0.6939 -2.0869 -0.6022 30 1 0.1527 -4.4787 -0.3984 31 1 2.6474 -2.1980 3.1956 32 1 0.2305 -5.9052 3.8426 33 1 1.6275 -6.9919 3.5583 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:21 Heat of formation + Delta-G solvation = -63.181604 kcal Electronic energy + Delta-G solvation = -18701.715628 eV Core-core repulsion = 15694.714102 eV Total energy + Delta-G solvation = -3007.001526 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68830 -39.23130 -35.99818 -35.85887 -33.78248 -30.80147 -29.74068 -28.58231 -26.13332 -25.55473 -25.07359 -22.49393 -22.13939 -20.08114 -17.87581 -17.44280 -17.00512 -16.54751 -15.69368 -15.16193 -14.75250 -14.12674 -13.92402 -13.84874 -13.37188 -12.89382 -12.69208 -12.59816 -12.12595 -11.94275 -11.60657 -11.38939 -11.05703 -10.98554 -10.70366 -10.65379 -10.35404 -10.17587 -9.85813 -9.50767 -8.88542 -8.56247 -8.18207 -6.99848 -6.26477 -4.36981 1.76552 1.88976 3.09700 3.19617 3.24585 3.28915 3.75631 4.19363 4.25953 4.54135 4.87773 4.99455 5.03625 5.09024 5.57720 5.64423 5.96464 6.08787 6.29257 6.41249 6.53534 6.59635 6.64094 6.73347 6.85326 6.99777 7.09682 7.21269 7.29810 7.46119 7.56974 7.68536 7.89873 7.95854 8.36877 8.80111 9.28878 10.73336 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.007164 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.389904 B = 3907.533863 C = 4493.423254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.227 3.773 3 C -0.125 4.125 4 C -0.543 4.543 5 H 0.070 0.930 6 C 0.071 3.929 7 N -0.880 5.880 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.318 6.318 13 C 0.177 3.823 14 C -0.182 4.182 15 C -0.073 4.073 16 C -0.034 4.034 17 C 0.053 3.947 18 C -0.158 4.158 19 O -0.315 6.315 20 C 0.215 3.785 21 O -0.317 6.317 22 H 0.022 0.978 23 H 0.101 0.899 24 H 0.047 0.953 25 H 0.037 0.963 26 H 0.104 0.896 27 H 0.021 0.979 28 H 0.267 0.733 29 H 0.191 0.809 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 -6.989 6.448 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.192 3.808 3 C -0.182 4.182 4 C -0.580 4.580 5 H 0.088 0.912 6 C -0.132 4.132 7 N -0.517 5.517 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.232 6.232 13 C 0.129 3.871 14 C -0.200 4.200 15 C -0.092 4.092 16 C -0.077 4.077 17 C 0.009 3.991 18 C -0.177 4.177 19 O -0.232 6.232 20 C 0.103 3.897 21 O -0.234 6.234 22 H 0.041 0.959 23 H 0.119 0.881 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.122 0.878 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.207 0.793 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.092 0.908 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.536 -6.898 6.467 9.579 hybrid contribution 0.237 -0.726 -0.794 1.102 sum -1.299 -7.624 5.674 9.592 Atomic orbital electron populations 1.22646 0.97871 1.00369 1.02856 1.19699 0.90942 0.89962 0.80247 1.21763 0.99365 0.95131 1.01963 1.21595 1.32713 1.13298 0.90440 0.91181 1.24833 0.94522 0.94841 0.99037 1.69755 1.35517 1.22210 1.24253 0.86533 0.79558 0.79912 0.81521 1.19771 1.21000 1.19974 1.85998 1.72779 1.17544 1.46884 1.18318 0.92061 0.85128 0.91572 1.22523 1.01641 0.93831 1.02004 1.19990 1.00660 0.93216 0.95325 1.19614 1.06533 0.82822 0.98759 1.19157 1.00131 0.91077 0.88774 1.18981 1.09279 0.89416 1.00065 1.87275 1.57888 1.28685 1.49307 1.25422 0.92500 0.91151 0.80638 1.87290 1.88368 1.23951 1.23778 0.95876 0.88059 0.93422 0.94372 0.87809 0.95982 0.92224 0.79288 0.85474 0.85039 0.90768 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.04 8.07 37.16 0.30 -3.74 16 2 C 0.23 5.36 0.84 -91.78 -0.08 5.29 16 3 C -0.12 -2.85 8.66 37.16 0.32 -2.53 16 4 C -0.54 -13.53 5.41 -34.44 -0.19 -13.71 16 5 H 0.07 1.80 6.73 -52.49 -0.35 1.45 16 6 C 0.07 1.75 5.12 -17.82 -0.09 1.66 16 7 N -0.88 -21.97 9.30 55.43 0.52 -21.45 16 8 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 O -0.32 -7.35 9.78 -19.69 -0.19 -7.55 16 13 C 0.18 3.78 6.00 -39.26 -0.24 3.55 16 14 C -0.18 -3.78 6.28 -39.42 -0.25 -4.03 16 15 C -0.07 -1.38 10.05 -39.48 -0.40 -1.77 16 16 C -0.03 -0.63 7.15 -39.10 -0.28 -0.91 16 17 C 0.05 0.99 7.15 -39.10 -0.28 0.71 16 18 C -0.16 -3.08 10.00 -39.32 -0.39 -3.47 16 19 O -0.31 -5.25 11.40 -45.72 -0.52 -5.77 16 20 C 0.22 2.80 8.89 101.05 0.90 3.70 16 21 O -0.32 -5.29 11.41 -46.01 -0.52 -5.82 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.10 2.42 5.93 -51.93 -0.31 2.11 16 24 H 0.05 1.02 5.01 -51.93 -0.26 0.76 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.10 2.50 5.99 -51.93 -0.31 2.19 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 29 H 0.19 4.22 3.76 -52.49 -0.20 4.03 16 30 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 31 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -26.46 268.92 -5.88 -32.34 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -3.52 Total: 4.76 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -0.67 Total: -15.27 kcal Atomic # 7 Polarization: -21.97 SS G_CDS: 0.52 Total: -21.45 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.24 Total: -19.13 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.46 -5.88 -32.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.839 kcal (2) G-P(sol) polarization free energy of solvation -26.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds