Wall clock time and date at job start Mon Mar 30 2020 06:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47165 * 2 1 4 4 C 1.50697 * 109.47343 * 240.00357 * 2 1 3 5 5 H 1.08002 * 119.99988 * 240.00098 * 4 2 1 6 6 C 1.37875 * 120.00402 * 59.99704 * 4 2 1 7 7 N 1.31518 * 119.99648 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47230 * 60.00112 * 8 6 4 10 10 H 1.48503 * 109.47249 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47355 * 300.00016 * 8 6 4 12 12 O 1.42894 * 109.47139 * 119.99982 * 2 1 3 13 13 C 1.35982 * 117.00131 * 63.60795 * 12 2 1 14 14 C 1.38693 * 119.98326 * 2.00457 * 13 12 2 15 15 C 1.38219 * 120.08162 * 179.80768 * 14 13 12 16 16 C 1.38529 * 120.09927 * 0.43585 * 15 14 13 17 17 C 1.39257 * 119.91603 * 359.56317 * 16 15 14 18 18 C 1.38525 * 119.88314 * 0.22503 * 17 16 15 19 19 O 1.36511 * 108.64574 * 180.25434 * 17 16 15 20 20 C 1.43988 * 105.50061 * 342.70193 * 19 17 16 21 21 O 1.36596 * 131.46257 * 179.87671 * 16 15 14 22 22 H 1.08997 * 109.47212 * 306.25195 * 1 2 3 23 23 H 1.09001 * 109.47236 * 66.24987 * 1 2 3 24 24 H 1.08998 * 109.47226 * 186.24958 * 1 2 3 25 25 H 1.09006 * 109.47456 * 176.47233 * 3 2 1 26 26 H 1.09007 * 109.47210 * 296.47478 * 3 2 1 27 27 H 1.08998 * 109.47172 * 56.47282 * 3 2 1 28 28 H 0.97000 * 119.99790 * 179.97438 * 7 6 4 29 29 H 1.08000 * 119.95857 * 0.03278 * 14 13 12 30 30 H 1.08005 * 119.95149 * 180.30632 * 15 14 13 31 31 H 1.08002 * 120.00775 * 180.02562 * 18 17 16 32 32 H 1.08996 * 110.57001 * 268.58713 * 20 19 17 33 33 H 1.08998 * 110.57154 * 145.70729 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8259 -2.5201 -4.0078 10 1 1.8260 -0.4205 -5.2204 11 1 3.8065 -1.1207 -4.0082 12 8 2.0063 -0.6736 1.1667 13 6 1.7043 -1.9943 1.2836 14 6 1.0009 -2.6364 0.2754 15 6 0.6963 -3.9797 0.3903 16 6 1.0849 -4.6862 1.5167 17 6 1.7913 -4.0436 2.5303 18 6 2.0992 -2.6983 2.4110 19 8 2.0587 -4.9482 3.5171 20 6 1.1571 -6.0470 3.2865 21 8 0.9095 -5.9943 1.8690 22 1 -0.3633 0.6077 0.8287 23 1 -0.3634 0.4139 -0.9406 24 1 -0.3633 -1.0215 0.1119 25 1 3.1282 1.4432 0.0632 26 1 1.7291 1.9378 -0.9199 27 1 1.6259 1.9742 0.8567 28 1 0.7087 1.1613 -3.4844 29 1 0.6939 -2.0869 -0.6022 30 1 0.1527 -4.4787 -0.3984 31 1 2.6474 -2.1980 3.1956 32 1 0.2305 -5.9052 3.8426 33 1 1.6275 -6.9919 3.5583 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:21 Heat of formation + Delta-G solvation = -78.109067 kcal Electronic energy + Delta-G solvation = -18702.362931 eV Core-core repulsion = 15694.714102 eV Total energy + Delta-G solvation = -3007.648829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.01768 -40.87666 -37.55643 -37.16820 -35.57923 -32.57675 -31.27759 -30.07668 -27.78769 -27.40195 -26.39171 -24.02877 -23.63415 -21.77471 -19.54132 -18.84325 -18.34309 -18.03710 -17.19224 -16.92709 -16.22069 -15.72864 -15.58407 -15.35712 -14.77325 -14.52256 -14.29329 -13.90625 -13.72125 -13.55260 -13.25915 -13.08352 -12.81975 -12.68178 -12.49017 -12.38199 -12.14984 -11.80953 -11.51153 -11.17123 -10.61694 -10.43425 -9.67509 -8.53608 -8.13252 -6.28835 0.26517 0.37754 1.44165 1.46805 1.53028 1.76704 2.38807 2.50597 2.71570 3.00033 3.11298 3.59543 3.90942 4.10569 4.13834 4.34015 4.45455 4.61719 4.63516 4.74974 4.81429 4.94391 5.07271 5.10495 5.17434 5.26717 5.41652 5.49646 5.57509 5.64674 5.85533 6.01532 6.10662 6.21879 6.53118 6.98435 7.38770 8.84767 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.007164 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.389904 B = 3907.533863 C = 4493.423254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.221 3.779 3 C -0.120 4.120 4 C -0.550 4.550 5 H 0.056 0.944 6 C 0.039 3.961 7 N -0.894 5.894 8 Si 0.946 3.054 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.280 1.280 12 O -0.332 6.332 13 C 0.153 3.847 14 C -0.191 4.191 15 C -0.075 4.075 16 C -0.030 4.030 17 C 0.054 3.946 18 C -0.161 4.161 19 O -0.322 6.322 20 C 0.205 3.795 21 O -0.324 6.324 22 H 0.031 0.969 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.033 0.967 26 H 0.090 0.910 27 H 0.036 0.964 28 H 0.269 0.731 29 H 0.173 0.827 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 -8.677 7.163 11.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.186 3.814 3 C -0.178 4.178 4 C -0.588 4.588 5 H 0.074 0.926 6 C -0.163 4.163 7 N -0.532 5.532 8 Si 0.772 3.228 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.206 1.206 12 O -0.246 6.246 13 C 0.106 3.894 14 C -0.209 4.209 15 C -0.093 4.093 16 C -0.074 4.074 17 C 0.009 3.991 18 C -0.180 4.180 19 O -0.238 6.238 20 C 0.094 3.906 21 O -0.242 6.242 22 H 0.050 0.950 23 H 0.104 0.896 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.190 0.810 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.120 0.880 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.736 -8.603 7.199 11.351 hybrid contribution 0.287 -0.351 -0.891 1.000 sum -1.449 -8.954 6.308 11.048 Atomic orbital electron populations 1.22505 0.97286 1.00732 1.02220 1.19696 0.91458 0.90114 0.80181 1.21670 0.99080 0.95120 1.01889 1.21625 1.32698 1.13051 0.91398 0.92616 1.25336 0.94741 0.95411 1.00802 1.69832 1.35916 1.22758 1.24647 0.85780 0.78589 0.79186 0.79224 1.19505 1.20454 1.20554 1.85936 1.73451 1.18676 1.46580 1.18514 0.93485 0.84662 0.92734 1.22289 1.02473 0.94681 1.01483 1.20114 1.00511 0.92587 0.96120 1.19698 1.05629 0.83703 0.98355 1.19211 0.99488 0.91035 0.89361 1.19075 1.09161 0.89994 0.99757 1.87271 1.58824 1.29043 1.48706 1.26105 0.93780 0.91770 0.78931 1.87282 1.88282 1.22572 1.26026 0.95043 0.89614 0.92917 0.94799 0.89165 0.94466 0.92149 0.81045 0.83523 0.83929 0.88037 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.67 8.07 71.98 0.58 -7.09 16 2 C 0.22 10.55 0.84 -11.54 -0.01 10.54 16 3 C -0.12 -5.53 8.66 71.98 0.62 -4.91 16 4 C -0.55 -27.74 5.41 25.60 0.14 -27.60 16 5 H 0.06 2.92 6.73 -2.91 -0.02 2.90 16 6 C 0.04 1.92 5.12 84.65 0.43 2.35 16 7 N -0.89 -44.84 9.30 21.45 0.20 -44.64 16 8 Si 0.95 40.39 29.54 68.60 2.03 42.41 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 O -0.33 -15.45 9.78 -93.35 -0.91 -16.36 16 13 C 0.15 6.53 6.00 22.48 0.13 6.67 16 14 C -0.19 -7.92 6.28 22.37 0.14 -7.78 16 15 C -0.07 -2.72 10.05 22.33 0.22 -2.50 16 16 C -0.03 -1.06 7.15 22.58 0.16 -0.90 16 17 C 0.05 1.91 7.15 22.58 0.16 2.07 16 18 C -0.16 -6.12 10.00 22.44 0.22 -5.90 16 19 O -0.32 -9.78 11.40 -76.17 -0.87 -10.65 16 20 C 0.20 4.52 8.89 113.37 1.01 5.53 16 21 O -0.32 -9.83 11.41 -77.18 -0.88 -10.71 16 22 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.09 4.13 5.93 -2.39 -0.01 4.12 16 24 H 0.05 2.28 5.01 -2.39 -0.01 2.26 16 25 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.09 4.40 5.99 -2.38 -0.01 4.39 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 29 H 0.17 7.76 3.76 -2.91 -0.01 7.75 16 30 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 31 H 0.14 4.97 8.06 -2.91 -0.02 4.95 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.16 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -55.54 268.92 4.52 -51.02 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.14 Total: 18.44 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.82 Total: -29.50 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.20 Total: -44.64 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -2.66 Total: -37.73 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.41 kcal Total: -55.54 4.52 -51.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.088 kcal (2) G-P(sol) polarization free energy of solvation -55.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds