Wall clock time and date at job start Mon Mar 30 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38292 * 119.87534 * 2 1 4 4 C 1.37948 * 120.21033 * 180.25306 * 3 2 1 5 5 C 1.39657 * 119.96292 * 359.74856 * 4 3 2 6 6 C 1.47736 * 120.12273 * 179.97438 * 5 4 3 7 7 O 1.21469 * 119.99814 * 180.02562 * 6 5 4 8 8 O 1.34710 * 120.00569 * 0.02562 * 6 5 4 9 9 C 1.39537 * 119.74929 * 359.97438 * 5 4 3 10 10 C 1.38486 * 119.79110 * 359.97438 * 9 5 4 11 11 O 1.35913 * 119.98242 * 179.97438 * 10 9 5 12 12 C 1.42903 * 116.99828 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99711 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00219 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46794 * 90.00022 * 18 16 14 20 20 H 1.48502 * 109.47140 * 210.00005 * 18 16 14 21 21 H 1.48501 * 109.46982 * 330.00118 * 18 16 14 22 22 H 1.08997 * 109.47225 * 270.25686 * 1 2 3 23 23 H 1.09000 * 109.46529 * 30.25366 * 1 2 3 24 24 H 1.08995 * 109.46768 * 150.25334 * 1 2 3 25 25 H 1.08000 * 119.89846 * 0.02562 * 3 2 1 26 26 H 1.08004 * 120.01888 * 179.72551 * 4 3 2 27 27 H 0.96695 * 117.00387 * 180.02562 * 8 6 5 28 28 H 1.07998 * 120.10458 * 180.02562 * 9 5 4 29 29 H 1.09002 * 109.47382 * 59.99787 * 12 11 10 30 30 H 1.09001 * 109.46938 * 299.99773 * 12 11 10 31 31 H 1.09001 * 109.47194 * 299.99575 * 13 12 11 32 32 H 1.08992 * 109.47399 * 59.99748 * 13 12 11 33 33 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1991 0.0000 4 6 3.5754 1.2072 -0.0053 5 6 4.2800 0.0014 -0.0053 6 6 5.7573 0.0059 -0.0115 7 8 6.3678 -1.0442 -0.0120 8 8 6.4274 1.1745 -0.0166 9 6 3.5833 -1.2076 0.0005 10 6 2.1985 -1.2037 0.0069 11 8 1.5159 -2.3790 0.0120 12 6 2.2913 -3.5794 0.0111 13 6 1.3562 -4.7904 0.0168 14 6 2.1739 -6.0564 0.0165 15 1 3.2525 -6.0025 0.0122 16 6 1.5448 -7.2833 0.0217 17 7 2.2583 -8.3880 0.0209 18 14 -0.3209 -7.3764 0.0298 19 1 -0.8211 -7.4039 -1.3682 20 1 -0.7519 -8.6106 0.7342 21 1 -0.8727 -6.1886 0.7297 22 1 -0.3633 0.0046 1.0276 23 1 -0.3632 0.8877 -0.5178 24 1 -0.3633 -0.8922 -0.5099 25 1 1.6522 2.1323 0.0004 26 1 4.1102 2.1455 -0.0097 27 1 7.3931 1.1269 -0.0210 28 1 4.1224 -2.1434 0.0009 29 1 2.9238 -3.6041 0.8985 30 1 2.9163 -3.6076 -0.8814 31 1 0.7309 -4.7625 0.9092 32 1 0.7240 -4.7655 -0.8707 33 1 1.8157 -9.2512 0.0249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042227744.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:40 Heat of formation + Delta-G solvation = -118.313983 kcal Electronic energy + Delta-G solvation = -17464.092280 eV Core-core repulsion = 14454.700035 eV Total energy + Delta-G solvation = -3009.392245 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.62938 -39.60739 -37.27579 -36.19271 -33.46848 -32.90064 -30.94164 -29.77266 -27.69062 -25.48671 -23.42296 -22.36343 -21.27754 -20.27010 -18.57180 -17.76246 -16.87415 -15.86962 -15.81670 -15.71918 -15.48650 -15.32735 -14.29447 -13.94921 -13.65138 -13.39820 -13.25216 -12.55709 -12.41357 -12.29369 -11.86558 -11.74762 -11.53401 -11.43999 -11.04783 -10.87385 -10.63576 -10.23763 -10.04787 -9.85356 -9.35956 -8.98563 -8.63398 -8.07219 -6.13835 -4.15170 0.60060 1.37736 2.48533 2.86745 3.27299 3.34630 3.39093 3.60078 3.70849 4.37829 4.69509 4.78364 4.99507 5.04720 5.19813 5.26861 5.46508 5.58482 5.66410 5.74254 5.87541 5.87782 6.11620 6.19136 6.20097 6.33927 6.40979 6.41622 6.66268 7.01318 7.19476 7.58940 7.74730 7.79274 8.38295 8.87562 9.45810 10.98753 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.005183 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.157021 B = 5401.420867 C = 6508.825035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C -0.101 4.101 4 C -0.105 4.105 5 C -0.098 4.098 6 C 0.526 3.474 7 O -0.508 6.508 8 O -0.514 6.514 9 C -0.144 4.144 10 C 0.132 3.868 11 O -0.312 6.312 12 C 0.068 3.932 13 C -0.007 4.007 14 C -0.528 4.528 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.413 0.587 28 H 0.147 0.853 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 21.588 -0.030 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.119 4.119 4 C -0.123 4.123 5 C -0.099 4.099 6 C 0.370 3.630 7 O -0.397 6.397 8 O -0.326 6.326 9 C -0.163 4.163 10 C 0.085 3.915 11 O -0.225 6.225 12 C -0.006 4.006 13 C -0.044 4.044 14 C -0.566 4.566 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.708 3.292 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.188 1.188 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.152 0.848 26 H 0.154 0.846 27 H 0.271 0.729 28 H 0.165 0.835 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.285 21.050 -0.026 21.052 hybrid contribution 0.141 -0.382 -0.012 0.407 sum 0.426 20.668 -0.037 20.673 Atomic orbital electron populations 1.20698 0.90099 1.03180 1.02693 1.19610 0.97016 0.90417 1.01812 1.20815 0.93630 0.97029 1.00462 1.21227 0.94152 0.97114 0.99832 1.18715 0.88570 0.94456 1.08201 1.20955 0.88943 0.80911 0.72204 1.90926 1.69984 1.33072 1.45686 1.84545 1.26769 1.35182 1.86057 1.21470 0.93350 0.98784 1.02675 1.18765 0.89664 0.87201 0.95851 1.86146 1.36686 1.12461 1.87200 1.23181 0.95411 0.81140 1.00838 1.19574 0.95785 0.91160 0.97907 1.20848 0.94959 0.88365 1.52441 0.90673 1.24934 0.98506 0.95424 0.94101 1.69897 1.35816 0.97691 1.50072 0.86756 0.85856 0.77888 0.78741 1.20054 1.21164 1.18767 0.90915 0.91564 0.90430 0.84767 0.84644 0.72894 0.83500 0.92248 0.92293 0.95360 0.95797 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.78 36.01 0.35 -0.87 16 2 C -0.09 -1.15 5.90 -104.39 -0.62 -1.77 16 3 C -0.10 -1.09 9.67 -39.67 -0.38 -1.47 16 4 C -0.10 -1.18 9.61 -39.16 -0.38 -1.55 16 5 C -0.10 -1.36 5.87 -105.00 -0.62 -1.98 16 6 C 0.53 7.11 8.27 34.61 0.29 7.39 16 7 O -0.51 -8.60 17.13 -19.24 -0.33 -8.93 16 8 O -0.51 -4.82 12.68 -40.52 -0.51 -5.33 16 9 C -0.14 -2.30 8.58 -39.01 -0.33 -2.63 16 10 C 0.13 2.13 6.65 -39.28 -0.26 1.86 16 11 O -0.31 -5.79 9.16 -19.47 -0.18 -5.97 16 12 C 0.07 1.40 4.68 37.16 0.17 1.57 16 13 C -0.01 -0.16 4.41 -27.88 -0.12 -0.29 16 14 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 15 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 18 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 24 H 0.08 0.98 7.52 -51.93 -0.39 0.59 16 25 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.14 1.21 7.61 -52.48 -0.40 0.81 16 27 H 0.41 1.99 9.11 45.56 0.42 2.41 16 28 H 0.15 2.54 5.88 -52.49 -0.31 2.23 16 29 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 30 H 0.06 1.19 7.66 -51.93 -0.40 0.79 16 31 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 32 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 33 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 290.50 15.07 4.38 4.38 Total: -1.00 -32.93 290.50 -5.97 -38.90 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.10 Total: -0.19 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.33 Total: -13.01 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.02 Total: -20.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.93 -5.97 -38.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042227744.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.414 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds