Wall clock time and date at job start Mon Mar 30 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38292 * 119.87534 * 2 1 4 4 C 1.37948 * 120.21033 * 180.25306 * 3 2 1 5 5 C 1.39657 * 119.96292 * 359.74856 * 4 3 2 6 6 C 1.47736 * 120.12273 * 179.97438 * 5 4 3 7 7 O 1.21469 * 119.99814 * 180.02562 * 6 5 4 8 8 O 1.34710 * 120.00569 * 0.02562 * 6 5 4 9 9 C 1.39537 * 119.74929 * 359.97438 * 5 4 3 10 10 C 1.38486 * 119.79110 * 359.97438 * 9 5 4 11 11 O 1.35913 * 119.98242 * 179.97438 * 10 9 5 12 12 C 1.42903 * 116.99828 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99711 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00219 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46794 * 90.00022 * 18 16 14 20 20 H 1.48502 * 109.47140 * 210.00005 * 18 16 14 21 21 H 1.48501 * 109.46982 * 330.00118 * 18 16 14 22 22 H 1.08997 * 109.47225 * 270.25686 * 1 2 3 23 23 H 1.09000 * 109.46529 * 30.25366 * 1 2 3 24 24 H 1.08995 * 109.46768 * 150.25334 * 1 2 3 25 25 H 1.08000 * 119.89846 * 0.02562 * 3 2 1 26 26 H 1.08004 * 120.01888 * 179.72551 * 4 3 2 27 27 H 0.96695 * 117.00387 * 180.02562 * 8 6 5 28 28 H 1.07998 * 120.10458 * 180.02562 * 9 5 4 29 29 H 1.09002 * 109.47382 * 59.99787 * 12 11 10 30 30 H 1.09001 * 109.46938 * 299.99773 * 12 11 10 31 31 H 1.09001 * 109.47194 * 299.99575 * 13 12 11 32 32 H 1.08992 * 109.47399 * 59.99748 * 13 12 11 33 33 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1991 0.0000 4 6 3.5754 1.2072 -0.0053 5 6 4.2800 0.0014 -0.0053 6 6 5.7573 0.0059 -0.0115 7 8 6.3678 -1.0442 -0.0120 8 8 6.4274 1.1745 -0.0166 9 6 3.5833 -1.2076 0.0005 10 6 2.1985 -1.2037 0.0069 11 8 1.5159 -2.3790 0.0120 12 6 2.2913 -3.5794 0.0111 13 6 1.3562 -4.7904 0.0168 14 6 2.1739 -6.0564 0.0165 15 1 3.2525 -6.0025 0.0122 16 6 1.5448 -7.2833 0.0217 17 7 2.2583 -8.3880 0.0209 18 14 -0.3209 -7.3764 0.0298 19 1 -0.8211 -7.4039 -1.3682 20 1 -0.7519 -8.6106 0.7342 21 1 -0.8727 -6.1886 0.7297 22 1 -0.3633 0.0046 1.0276 23 1 -0.3632 0.8877 -0.5178 24 1 -0.3633 -0.8922 -0.5099 25 1 1.6522 2.1323 0.0004 26 1 4.1102 2.1455 -0.0097 27 1 7.3931 1.1269 -0.0210 28 1 4.1224 -2.1434 0.0009 29 1 2.9238 -3.6041 0.8985 30 1 2.9163 -3.6076 -0.8814 31 1 0.7309 -4.7625 0.9092 32 1 0.7240 -4.7655 -0.8707 33 1 1.8157 -9.2512 0.0249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042227744.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:39 Heat of formation + Delta-G solvation = -140.690173 kcal Electronic energy + Delta-G solvation = -17465.062584 eV Core-core repulsion = 14454.700035 eV Total energy + Delta-G solvation = -3010.362549 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.71278 -40.75406 -38.50098 -37.16297 -35.45725 -34.03604 -32.76835 -30.99135 -28.65918 -27.32260 -24.53094 -23.65655 -22.61541 -21.66919 -19.82615 -18.95222 -18.66770 -17.15799 -17.06598 -17.00995 -16.69157 -16.39849 -16.20987 -15.03183 -14.84331 -14.83657 -14.38292 -14.32666 -13.80156 -13.29160 -13.17506 -12.99869 -12.70681 -12.57682 -12.50764 -12.31357 -12.15807 -11.86048 -11.72790 -11.64709 -11.47390 -10.83606 -9.98363 -9.23753 -8.36573 -6.44725 -0.44370 0.33857 1.35780 1.37542 1.44202 1.50432 1.94072 2.23446 2.32372 2.67657 2.98293 3.70554 3.82022 3.96912 4.08387 4.13549 4.14169 4.34308 4.47853 4.61148 4.73834 4.77817 4.87363 5.05505 5.18926 5.20403 5.26672 5.28992 5.43454 5.47919 5.51005 5.73709 6.13549 6.34691 6.61367 6.90231 7.20557 8.79708 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.005183 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.157021 B = 5401.420867 C = 6508.825035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.082 4.082 5 C -0.117 4.117 6 C 0.532 3.468 7 O -0.555 6.555 8 O -0.494 6.494 9 C -0.165 4.165 10 C 0.096 3.904 11 O -0.320 6.320 12 C 0.085 3.915 13 C -0.002 4.002 14 C -0.543 4.543 15 H 0.034 0.966 16 C 0.012 3.988 17 N -0.945 5.945 18 Si 0.954 3.046 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.246 1.246 22 H 0.081 0.919 23 H 0.100 0.900 24 H 0.057 0.943 25 H 0.182 0.818 26 H 0.170 0.830 27 H 0.434 0.566 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 25.265 -0.039 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.105 4.105 4 C -0.100 4.100 5 C -0.118 4.118 6 C 0.378 3.622 7 O -0.448 6.448 8 O -0.308 6.308 9 C -0.185 4.185 10 C 0.051 3.949 11 O -0.234 6.234 12 C 0.011 3.989 13 C -0.039 4.039 14 C -0.581 4.581 15 H 0.053 0.947 16 C -0.186 4.186 17 N -0.584 5.584 18 Si 0.777 3.223 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.169 1.169 22 H 0.100 0.900 23 H 0.119 0.881 24 H 0.076 0.924 25 H 0.199 0.801 26 H 0.188 0.812 27 H 0.296 0.704 28 H 0.135 0.865 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.732 24.786 -0.036 24.847 hybrid contribution 0.916 -1.329 -0.010 1.614 sum -0.816 23.458 -0.046 23.472 Atomic orbital electron populations 1.20776 0.88524 1.03884 1.03480 1.20030 0.98301 0.89867 1.00296 1.21340 0.93481 0.97709 0.97977 1.21661 0.94628 0.97050 0.96699 1.18867 0.89018 0.94758 1.09164 1.20955 0.89034 0.81099 0.71075 1.90915 1.70846 1.34915 1.48082 1.84477 1.28668 1.32651 1.84987 1.21340 0.93649 0.98851 1.04629 1.19103 0.89926 0.87163 0.98720 1.86053 1.36392 1.12586 1.88374 1.22667 0.94396 0.81670 1.00206 1.19410 0.95711 0.90617 0.98185 1.21129 0.93734 0.90803 1.52386 0.94744 1.25953 1.04496 0.94732 0.93395 1.70045 1.38408 0.98554 1.51407 0.85599 0.78565 0.78633 0.79542 1.18757 1.20447 1.16939 0.90011 0.88140 0.92436 0.80064 0.81249 0.70369 0.86459 0.93073 0.93087 0.94923 0.95027 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 9.78 71.24 0.70 -1.40 16 2 C -0.08 -1.99 5.90 -19.71 -0.12 -2.10 16 3 C -0.09 -1.47 9.67 22.21 0.21 -1.25 16 4 C -0.08 -1.53 9.61 22.54 0.22 -1.31 16 5 C -0.12 -3.13 5.87 -20.11 -0.12 -3.25 16 6 C 0.53 14.12 8.27 70.33 0.58 14.70 16 7 O -0.55 -19.56 17.13 19.94 0.34 -19.22 16 8 O -0.49 -8.00 12.68 -56.20 -0.71 -8.72 16 9 C -0.17 -5.50 8.58 22.64 0.19 -5.30 16 10 C 0.10 3.11 6.65 22.47 0.15 3.26 16 11 O -0.32 -12.15 9.16 -92.57 -0.85 -13.00 16 12 C 0.09 3.69 4.68 71.98 0.34 4.03 16 13 C 0.00 -0.09 4.41 29.85 0.13 0.04 16 14 C -0.54 -32.07 9.66 25.60 0.25 -31.82 16 15 H 0.03 2.24 7.99 -2.91 -0.02 2.21 16 16 C 0.01 0.72 5.47 84.66 0.46 1.19 16 17 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 18 Si 0.95 44.25 27.47 68.60 1.88 46.13 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 22 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.10 1.22 8.08 -2.39 -0.02 1.20 16 24 H 0.06 1.35 7.52 -2.39 -0.02 1.33 16 25 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 26 H 0.17 2.03 7.61 -2.91 -0.02 2.01 16 27 H 0.43 3.13 9.11 -74.06 -0.67 2.46 16 28 H 0.12 4.50 5.88 -2.91 -0.02 4.48 16 29 H 0.05 2.24 7.66 -2.39 -0.02 2.22 16 30 H 0.05 2.23 7.66 -2.39 -0.02 2.21 16 31 H 0.03 1.56 7.20 -2.39 -0.02 1.54 16 32 H 0.03 1.49 7.57 -2.39 -0.02 1.47 16 33 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -75.52 290.50 4.37 -71.15 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.40 Total: 6.19 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 3.00 Total: -23.23 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.30 Total: -59.31 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.22 Total: -40.93 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -75.52 4.37 -71.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042227744.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.538 kcal (2) G-P(sol) polarization free energy of solvation -75.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds