Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35750 * 116.99967 * 2 1 4 4 C 1.38916 * 119.90065 * 0.02562 * 3 2 1 5 5 C 1.37673 * 120.17780 * 179.97438 * 4 3 2 6 6 C 1.40015 * 119.97412 * 359.97438 * 5 4 3 7 7 C 1.46862 * 120.09273 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99634 * 179.97438 * 7 6 5 9 9 C 1.50692 * 120.00309 * 0.02562 * 7 6 5 10 10 H 1.08992 * 109.47585 * 35.00071 * 9 7 6 11 11 C 1.53005 * 109.47231 * 274.99618 * 9 7 6 12 12 C 1.50703 * 109.47060 * 154.99791 * 9 7 6 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 9 7 14 14 C 1.37878 * 120.00029 * 179.97438 * 12 9 7 15 15 N 1.31516 * 120.00043 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00166 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46938 * 60.00127 * 16 14 12 18 18 H 1.48494 * 109.47126 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46854 * 300.00342 * 16 14 12 20 20 C 1.40035 * 119.80424 * 0.02562 * 6 5 4 21 21 C 1.38025 * 119.82458 * 359.97438 * 20 6 5 22 22 O 1.36003 * 119.98544 * 179.97438 * 21 20 6 23 23 H 1.09005 * 109.47069 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47370 * 299.99591 * 1 2 3 25 25 H 1.09006 * 109.47388 * 60.00376 * 1 2 3 26 26 H 1.08003 * 119.91410 * 359.97438 * 4 3 2 27 27 H 1.07996 * 120.01366 * 180.27676 * 5 4 3 28 28 H 1.09001 * 109.47042 * 300.00111 * 11 9 7 29 29 H 1.09001 * 109.46668 * 60.00383 * 11 9 7 30 30 H 1.08999 * 109.47258 * 179.97438 * 11 9 7 31 31 H 0.97003 * 120.00068 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.08237 * 179.97438 * 20 6 5 33 33 H 0.96697 * 113.99730 * 90.01050 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2866 2.3733 0.0005 5 6 1.9057 3.6030 0.0011 6 6 3.3036 3.6824 0.0016 7 6 3.9667 4.9928 0.0016 8 8 5.1778 5.0595 0.0026 9 6 3.1425 6.2543 0.0016 10 1 2.2391 6.0982 0.5910 11 6 2.7584 6.6126 -1.4354 12 6 3.9459 7.3792 0.6021 13 1 4.9527 7.1986 0.9487 14 6 3.3958 8.6390 0.7082 15 7 2.1700 8.8591 0.2857 16 14 4.3918 10.0335 1.4519 17 1 5.6227 10.2458 0.6486 18 1 3.5796 11.2766 1.4520 19 1 4.7647 9.6862 2.8467 20 6 4.0674 2.5087 0.0011 21 6 3.4382 1.2802 0.0005 22 8 4.1769 0.1382 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2083 2.3133 0.0005 27 1 1.3134 4.5060 0.0060 28 1 3.6619 6.7689 -2.0248 29 1 2.1774 5.7991 -1.8697 30 1 2.1619 7.5249 -1.4354 31 1 1.7829 9.7453 0.3606 32 1 5.1460 2.5647 0.0011 33 1 4.3907 -0.1926 0.8826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = -95.701620 kcal Electronic energy + Delta-G solvation = -17870.190752 eV Core-core repulsion = 14861.779053 eV Total energy + Delta-G solvation = -3008.411699 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.42582 -38.68764 -37.60421 -36.02951 -33.81388 -30.91048 -30.29104 -29.47861 -27.44589 -25.19134 -23.93195 -22.56411 -21.56234 -19.32264 -18.27728 -17.30994 -16.61844 -16.11401 -15.96667 -15.37153 -14.75303 -14.60507 -14.22635 -13.99983 -13.71270 -13.36287 -12.67408 -12.50922 -12.25599 -12.00568 -11.54061 -11.33370 -11.05070 -10.98342 -10.73920 -10.68655 -10.60831 -10.25664 -10.06457 -9.01262 -8.81285 -8.54840 -8.31366 -8.04926 -6.05480 -4.10077 1.03051 1.33667 3.02401 3.12416 3.33860 3.36789 3.42129 4.00143 4.22249 4.41886 4.77763 4.88798 4.99040 5.00957 5.18648 5.27655 5.31696 5.46553 5.60522 5.83509 6.07481 6.27194 6.49203 6.61962 6.66233 6.77174 6.88373 6.98033 7.13540 7.48457 7.74541 7.75256 7.98680 8.23052 8.64002 8.94787 9.54785 11.01406 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.005198 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.475937 B = 5385.268181 C = 5862.299095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.119 3.881 4 C -0.211 4.211 5 C -0.034 4.034 6 C -0.175 4.175 7 C 0.400 3.600 8 O -0.464 6.464 9 C 0.006 3.994 10 H 0.052 0.948 11 C -0.130 4.130 12 C -0.507 4.507 13 H 0.067 0.933 14 C 0.061 3.939 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.058 4.058 21 C 0.054 3.946 22 O -0.486 6.486 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.136 0.864 27 H 0.147 0.853 28 H 0.032 0.968 29 H 0.014 0.986 30 H 0.094 0.906 31 H 0.262 0.738 32 H 0.144 0.856 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 -14.841 0.347 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.073 3.927 4 C -0.230 4.230 5 C -0.052 4.052 6 C -0.177 4.177 7 C 0.278 3.722 8 O -0.339 6.339 9 C -0.012 4.012 10 H 0.070 0.930 11 C -0.187 4.187 12 C -0.545 4.545 13 H 0.085 0.915 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.076 4.076 21 C 0.009 3.991 22 O -0.295 6.295 23 H 0.117 0.883 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.153 0.847 27 H 0.164 0.836 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.893 -14.799 -0.284 15.589 hybrid contribution 0.097 0.768 0.892 1.181 sum -4.797 -14.031 0.608 14.840 Atomic orbital electron populations 1.23108 0.78465 1.03875 1.01665 1.86071 1.21288 1.26559 1.88223 1.19703 0.91692 0.84787 0.96546 1.21144 1.00168 0.91706 1.09952 1.21527 0.93875 0.97748 0.92047 1.20959 0.94283 0.95905 1.06512 1.23252 0.89617 0.89725 0.69620 1.90371 1.17136 1.89734 1.36659 1.19130 0.96102 0.90069 0.95949 0.92987 1.21688 1.00121 1.01818 0.95115 1.21056 1.00671 0.93161 1.39605 0.91492 1.24927 0.95025 0.98634 0.95371 1.69849 1.13961 1.22422 1.47088 0.86543 0.80062 0.80967 0.79810 1.20128 1.21289 1.20209 1.21571 1.01242 0.89969 0.94847 1.17556 0.86045 0.86442 1.09055 1.84910 1.72131 1.39307 1.33106 0.88290 0.92435 0.92413 0.84672 0.83577 0.94865 0.96673 0.88715 0.92838 0.83866 0.76306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.92 10.26 -33.63 -0.35 -4.27 16 3 C 0.12 1.70 6.71 -38.87 -0.26 1.44 16 4 C -0.21 -2.87 9.01 -39.54 -0.36 -3.23 16 5 C -0.03 -0.54 9.34 -39.12 -0.37 -0.91 16 6 C -0.18 -3.26 5.87 -105.07 -0.62 -3.88 16 7 C 0.40 9.08 6.21 -30.82 -0.19 8.88 16 8 O -0.46 -11.66 15.79 5.54 0.09 -11.57 16 9 C 0.01 0.15 1.92 -92.92 -0.18 -0.03 16 10 H 0.05 1.27 6.73 -51.93 -0.35 0.92 16 11 C -0.13 -3.02 8.95 37.16 0.33 -2.69 16 12 C -0.51 -14.14 8.33 -34.44 -0.29 -14.42 16 13 H 0.07 1.94 7.03 -52.49 -0.37 1.58 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -24.69 11.32 55.43 0.63 -24.07 16 16 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.06 -0.98 9.52 -38.99 -0.37 -1.35 16 21 C 0.05 0.83 6.71 -39.20 -0.26 0.57 16 22 O -0.49 -6.66 13.28 -34.42 -0.46 -7.12 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 25 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 26 H 0.14 1.42 6.27 -52.48 -0.33 1.10 16 27 H 0.15 2.31 6.45 -52.49 -0.34 1.97 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.01 0.29 8.13 -51.93 -0.42 -0.13 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.14 2.43 7.64 -52.49 -0.40 2.03 16 33 H 0.38 3.40 9.06 45.56 0.41 3.81 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -31.94 286.48 -5.34 -37.28 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -2.89 Total: 1.81 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.66 Total: -12.84 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.63 Total: -24.07 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.71 Total: -22.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.94 -5.34 -37.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.425 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds