Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35750 * 116.99967 * 2 1 4 4 C 1.38916 * 119.90065 * 0.02562 * 3 2 1 5 5 C 1.37673 * 120.17780 * 179.97438 * 4 3 2 6 6 C 1.40015 * 119.97412 * 359.97438 * 5 4 3 7 7 C 1.46862 * 120.09273 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99634 * 179.97438 * 7 6 5 9 9 C 1.50692 * 120.00309 * 0.02562 * 7 6 5 10 10 H 1.08992 * 109.47585 * 35.00071 * 9 7 6 11 11 C 1.53005 * 109.47231 * 274.99618 * 9 7 6 12 12 C 1.50703 * 109.47060 * 154.99791 * 9 7 6 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 9 7 14 14 C 1.37878 * 120.00029 * 179.97438 * 12 9 7 15 15 N 1.31516 * 120.00043 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00166 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46938 * 60.00127 * 16 14 12 18 18 H 1.48494 * 109.47126 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46854 * 300.00342 * 16 14 12 20 20 C 1.40035 * 119.80424 * 0.02562 * 6 5 4 21 21 C 1.38025 * 119.82458 * 359.97438 * 20 6 5 22 22 O 1.36003 * 119.98544 * 179.97438 * 21 20 6 23 23 H 1.09005 * 109.47069 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47370 * 299.99591 * 1 2 3 25 25 H 1.09006 * 109.47388 * 60.00376 * 1 2 3 26 26 H 1.08003 * 119.91410 * 359.97438 * 4 3 2 27 27 H 1.07996 * 120.01366 * 180.27676 * 5 4 3 28 28 H 1.09001 * 109.47042 * 300.00111 * 11 9 7 29 29 H 1.09001 * 109.46668 * 60.00383 * 11 9 7 30 30 H 1.08999 * 109.47258 * 179.97438 * 11 9 7 31 31 H 0.97003 * 120.00068 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.08237 * 179.97438 * 20 6 5 33 33 H 0.96697 * 113.99730 * 90.01050 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2866 2.3733 0.0005 5 6 1.9057 3.6030 0.0011 6 6 3.3036 3.6824 0.0016 7 6 3.9667 4.9928 0.0016 8 8 5.1778 5.0595 0.0026 9 6 3.1425 6.2543 0.0016 10 1 2.2391 6.0982 0.5910 11 6 2.7584 6.6126 -1.4354 12 6 3.9459 7.3792 0.6021 13 1 4.9527 7.1986 0.9487 14 6 3.3958 8.6390 0.7082 15 7 2.1700 8.8591 0.2857 16 14 4.3918 10.0335 1.4519 17 1 5.6227 10.2458 0.6486 18 1 3.5796 11.2766 1.4520 19 1 4.7647 9.6862 2.8467 20 6 4.0674 2.5087 0.0011 21 6 3.4382 1.2802 0.0005 22 8 4.1769 0.1382 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2083 2.3133 0.0005 27 1 1.3134 4.5060 0.0060 28 1 3.6619 6.7689 -2.0248 29 1 2.1774 5.7991 -1.8697 30 1 2.1619 7.5249 -1.4354 31 1 1.7829 9.7453 0.3606 32 1 5.1460 2.5647 0.0011 33 1 4.3907 -0.1926 0.8826 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = -117.274321 kcal Electronic energy + Delta-G solvation = -17871.126215 eV Core-core repulsion = 14861.779053 eV Total energy + Delta-G solvation = -3009.347162 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59293 -40.24392 -38.71544 -37.28219 -35.81765 -32.78223 -31.52174 -30.75082 -28.33250 -27.24814 -25.45392 -23.81997 -23.03281 -20.78714 -19.43846 -18.56285 -18.37707 -17.58391 -17.12973 -16.62960 -16.59427 -15.82619 -15.56826 -15.29895 -15.10031 -15.03258 -14.39627 -13.86961 -13.50791 -13.20904 -13.11274 -12.95174 -12.67694 -12.61832 -12.29801 -12.23767 -12.07123 -11.99410 -11.71291 -11.04021 -10.55406 -10.18461 -10.00140 -9.23152 -8.14556 -6.26137 -0.30267 0.15816 1.41434 1.42679 1.50187 1.55037 2.19506 2.42099 2.66761 3.06324 3.14966 3.44186 3.74899 3.98887 4.18713 4.40779 4.42381 4.43660 4.52626 4.73132 4.76606 4.83576 4.96798 5.04170 5.06700 5.15179 5.33011 5.47516 5.55052 5.71332 5.95825 6.19049 6.23886 6.76782 6.80285 6.89730 7.41112 8.90457 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.005198 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.475937 B = 5385.268181 C = 5862.299095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.317 6.317 3 C 0.132 3.868 4 C -0.198 4.198 5 C -0.033 4.033 6 C -0.202 4.202 7 C 0.401 3.599 8 O -0.504 6.504 9 C 0.001 3.999 10 H 0.053 0.947 11 C -0.118 4.118 12 C -0.536 4.536 13 H 0.044 0.956 14 C 0.024 3.976 15 N -0.907 5.907 16 Si 0.952 3.048 17 H -0.279 1.279 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.064 4.064 21 C 0.054 3.946 22 O -0.493 6.493 23 H 0.124 0.876 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.173 0.827 27 H 0.147 0.853 28 H 0.017 0.983 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.266 0.734 32 H 0.133 0.867 33 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -16.369 0.519 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.230 6.230 3 C 0.085 3.915 4 C -0.216 4.216 5 C -0.051 4.051 6 C -0.204 4.204 7 C 0.283 3.717 8 O -0.383 6.383 9 C -0.018 4.018 10 H 0.070 0.930 11 C -0.176 4.176 12 C -0.574 4.574 13 H 0.062 0.938 14 C -0.176 4.176 15 N -0.546 5.546 16 Si 0.778 3.222 17 H -0.205 1.205 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.082 4.082 21 C 0.008 3.992 22 O -0.305 6.305 23 H 0.142 0.858 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.190 0.810 27 H 0.165 0.835 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.789 -16.347 -0.099 17.701 hybrid contribution 0.576 1.062 0.845 1.474 sum -6.213 -15.286 0.746 16.517 Atomic orbital electron populations 1.23517 0.75827 1.06103 1.02903 1.86083 1.23934 1.25498 1.87456 1.19763 0.91415 0.85755 0.94598 1.21416 1.01904 0.90193 1.08111 1.21548 0.92610 0.99030 0.91883 1.20531 0.95420 0.94002 1.10398 1.23277 0.88960 0.91110 0.68352 1.90341 1.18491 1.90405 1.39044 1.19122 0.95938 0.90460 0.96274 0.92966 1.21520 0.99464 1.02128 0.94500 1.21249 1.00280 0.95029 1.40839 0.93817 1.25558 0.96044 1.00403 0.95612 1.69921 1.14609 1.23024 1.47073 0.85701 0.78750 0.78748 0.78997 1.20468 1.19852 1.19895 1.21480 1.00814 0.90446 0.95497 1.17512 0.86882 0.86133 1.08657 1.84850 1.72034 1.38468 1.35128 0.85821 0.90961 0.91283 0.80961 0.83499 0.96342 0.93376 0.90553 0.92491 0.84885 0.73808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -6.85 10.26 -76.73 -0.79 -7.63 16 3 C 0.13 3.37 6.71 22.73 0.15 3.52 16 4 C -0.20 -4.72 9.01 22.30 0.20 -4.52 16 5 C -0.03 -0.99 9.34 22.57 0.21 -0.78 16 6 C -0.20 -7.55 5.87 -20.15 -0.12 -7.67 16 7 C 0.40 18.84 6.21 27.94 0.17 19.01 16 8 O -0.50 -26.64 15.79 -3.08 -0.05 -26.69 16 9 C 0.00 0.04 1.92 -12.29 -0.02 0.02 16 10 H 0.05 2.59 6.73 -2.39 -0.02 2.58 16 11 C -0.12 -5.58 8.95 71.98 0.64 -4.94 16 12 C -0.54 -30.82 8.33 25.60 0.21 -30.61 16 13 H 0.04 2.66 7.03 -2.91 -0.02 2.64 16 14 C 0.02 1.30 5.30 84.65 0.45 1.75 16 15 N -0.91 -50.23 11.32 21.45 0.24 -49.99 16 16 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 20 C -0.06 -2.16 9.52 22.66 0.22 -1.95 16 21 C 0.05 1.55 6.71 22.52 0.15 1.70 16 22 O -0.49 -12.59 13.28 -79.56 -1.06 -13.65 16 23 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 25 H 0.07 0.71 7.65 -2.38 -0.02 0.69 16 26 H 0.17 2.78 6.27 -2.91 -0.02 2.76 16 27 H 0.15 4.43 6.45 -2.91 -0.02 4.41 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 30 H 0.08 3.88 6.07 -2.39 -0.01 3.87 16 31 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.13 4.68 7.64 -2.91 -0.02 4.66 16 33 H 0.40 6.34 9.06 -74.06 -0.67 5.67 16 Total: -1.00 -69.85 286.48 4.23 -65.62 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.47 Total: 9.17 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 3.38 Total: -23.23 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.24 Total: -49.99 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -1.89 Total: -47.97 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.85 4.23 -65.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.656 kcal (2) G-P(sol) polarization free energy of solvation -69.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds