Wall clock time and date at job start Mon Mar 30 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 O 1.45209 * 109.47126 * 0.02562 * 9 8 7 11 11 C 1.34230 * 117.00029 * 179.97438 * 10 9 8 12 12 O 1.20822 * 119.99826 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99959 * 179.97438 * 11 10 9 14 14 C 1.50699 * 109.47172 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99886 * 0.02562 * 14 13 11 16 16 C 1.37870 * 120.00160 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99974 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00262 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47253 * 59.99365 * 18 16 14 20 20 H 1.48503 * 109.47529 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46854 * 299.99798 * 18 16 14 22 22 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 23 23 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 26 26 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 27 27 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 28 28 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 29 29 H 1.09008 * 109.47163 * 120.00093 * 9 8 7 30 30 H 1.08997 * 109.47559 * 240.00556 * 9 8 7 31 31 H 1.09000 * 109.46943 * 300.00513 * 13 11 10 32 32 H 1.09004 * 109.46872 * 60.00468 * 13 11 10 33 33 H 0.96997 * 120.00328 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 8 5.6650 0.3640 -0.0005 11 6 6.5388 -0.6549 0.0004 12 8 6.1377 -1.7946 0.0008 13 6 8.0200 -0.3773 -0.0004 14 6 8.7754 -1.6813 0.0002 15 1 8.2368 -2.6174 0.0006 16 6 10.1541 -1.6793 0.0002 17 7 10.8101 -0.5393 -0.0008 18 14 11.0906 -3.2955 0.0002 19 1 10.7329 -4.0749 -1.2122 20 1 12.5502 -3.0221 -0.0004 21 1 10.7330 -4.0747 1.2128 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2128 2.3203 -0.0010 26 1 1.3339 4.5114 0.0026 27 1 3.7920 4.6381 -0.0024 28 1 5.1344 2.5754 -0.0023 29 1 4.0219 -0.5621 0.8903 30 1 4.0213 -0.5632 -0.8898 31 1 8.2821 0.1937 -0.8910 32 1 8.2827 0.1956 0.8890 33 1 11.7800 -0.5378 -0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:32 Heat of formation + Delta-G solvation = -106.568285 kcal Electronic energy + Delta-G solvation = -17390.131107 eV Core-core repulsion = 14381.248193 eV Total energy + Delta-G solvation = -3008.882913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.37891 -39.34984 -37.48005 -35.68305 -33.03568 -32.12543 -30.19233 -29.22684 -27.57447 -26.27232 -23.83025 -22.22060 -21.47587 -19.92126 -18.15343 -16.88231 -16.30702 -16.10369 -16.04629 -15.69808 -15.59215 -14.99583 -14.44026 -14.19098 -13.71112 -13.43521 -13.05747 -12.44801 -12.35953 -12.12504 -11.91724 -11.31873 -11.25306 -11.23888 -10.92084 -10.82498 -10.68295 -10.17930 -10.04039 -9.38146 -9.23604 -8.85917 -8.48620 -8.21344 -6.11558 -4.13446 1.25612 1.37003 3.13642 3.33494 3.35643 3.37278 3.38846 3.51845 3.69483 4.43933 4.64391 4.80198 4.89110 4.93781 5.04624 5.22249 5.26503 5.29663 5.38071 5.53293 5.68402 5.79172 5.93379 6.08521 6.25240 6.43266 6.53381 6.76063 7.14806 7.24474 7.25268 7.29187 7.89130 8.10979 8.87630 8.97155 9.51468 11.00370 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.040062 B = 0.004212 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.740376 B = 6646.172680 C = 7319.165065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.129 3.871 4 C -0.210 4.210 5 C -0.086 4.086 6 C -0.157 4.157 7 C -0.059 4.059 8 C -0.115 4.115 9 C 0.115 3.885 10 O -0.369 6.369 11 C 0.462 3.538 12 O -0.516 6.516 13 C 0.033 3.967 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.145 0.855 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.315 8.103 0.002 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.084 3.916 4 C -0.229 4.229 5 C -0.104 4.104 6 C -0.175 4.175 7 C -0.077 4.077 8 C -0.116 4.116 9 C 0.041 3.959 10 O -0.287 6.287 11 C 0.307 3.693 12 O -0.403 6.403 13 C -0.004 4.004 14 C -0.558 4.558 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.734 3.266 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.118 0.882 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.163 0.837 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.206 7.626 0.001 20.665 hybrid contribution 0.088 -0.696 0.001 0.702 sum -19.118 6.930 0.002 20.336 Atomic orbital electron populations 1.23050 0.78470 1.03972 1.01190 1.86115 1.21314 1.26759 1.88600 1.18699 0.91092 0.84501 0.97282 1.21108 0.99728 0.92191 1.09850 1.20935 0.94784 0.96782 0.97890 1.21127 0.93773 0.98604 1.03972 1.21048 1.01341 0.90323 0.94944 1.19101 0.90002 0.95722 1.06759 1.21266 0.78410 0.93428 1.02769 1.86533 1.16389 1.40575 1.85234 1.25298 0.90850 0.82602 0.70584 1.90508 1.80371 1.23568 1.45844 1.19103 0.80024 1.00423 1.00858 1.21116 0.90985 0.92130 1.51597 0.90579 1.24988 0.97466 0.97012 0.94850 1.69954 1.08095 1.25285 1.50207 0.86410 0.78122 0.83131 0.78934 1.20022 1.21211 1.20018 0.92697 0.92706 0.88216 0.85484 0.85932 0.85648 0.83736 0.90459 0.90452 0.92151 0.92151 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.05 9.92 -19.42 -0.19 -4.24 16 3 C 0.13 1.74 6.66 -39.22 -0.26 1.48 16 4 C -0.21 -2.29 9.04 -39.43 -0.36 -2.65 16 5 C -0.09 -0.89 10.04 -39.60 -0.40 -1.28 16 6 C -0.16 -1.80 10.04 -39.56 -0.40 -2.20 16 7 C -0.06 -0.82 9.38 -39.61 -0.37 -1.20 16 8 C -0.12 -1.76 5.89 -104.48 -0.62 -2.37 16 9 C 0.12 2.04 5.33 36.00 0.19 2.23 16 10 O -0.37 -7.46 8.69 -39.26 -0.34 -7.80 16 11 C 0.46 11.03 7.95 36.01 0.29 11.31 16 12 O -0.52 -13.46 15.21 -18.75 -0.29 -13.74 16 13 C 0.03 0.86 5.57 -29.04 -0.16 0.69 16 14 C -0.52 -15.03 8.92 -34.44 -0.31 -15.34 16 15 H 0.08 2.26 6.76 -52.49 -0.35 1.91 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 18 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 23 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 26 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.14 2.09 6.99 -52.49 -0.37 1.72 16 29 H 0.08 1.38 8.13 -51.92 -0.42 0.96 16 30 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 31 H 0.06 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.06 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 292.55 15.07 4.41 4.41 Total: -1.00 -32.08 292.55 -6.13 -38.21 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -3.94 Total: -1.82 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.50 Total: -6.54 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.82 Total: -25.79 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.08 -6.13 -38.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.353 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds