Wall clock time and date at job start Mon Mar 30 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 O 1.45209 * 109.47126 * 0.02562 * 9 8 7 11 11 C 1.34230 * 117.00029 * 179.97438 * 10 9 8 12 12 O 1.20822 * 119.99826 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99959 * 179.97438 * 11 10 9 14 14 C 1.50699 * 109.47172 * 180.02562 * 13 11 10 15 15 H 1.07999 * 119.99886 * 0.02562 * 14 13 11 16 16 C 1.37870 * 120.00160 * 180.02562 * 14 13 11 17 17 N 1.31519 * 119.99974 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00262 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47253 * 59.99365 * 18 16 14 20 20 H 1.48503 * 109.47529 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46854 * 299.99798 * 18 16 14 22 22 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 23 23 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 26 26 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 27 27 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 28 28 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 29 29 H 1.09008 * 109.47163 * 120.00093 * 9 8 7 30 30 H 1.08997 * 109.47559 * 240.00556 * 9 8 7 31 31 H 1.09000 * 109.46943 * 300.00513 * 13 11 10 32 32 H 1.09004 * 109.46872 * 60.00468 * 13 11 10 33 33 H 0.96997 * 120.00328 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 8 5.6650 0.3640 -0.0005 11 6 6.5388 -0.6549 0.0004 12 8 6.1377 -1.7946 0.0008 13 6 8.0200 -0.3773 -0.0004 14 6 8.7754 -1.6813 0.0002 15 1 8.2368 -2.6174 0.0006 16 6 10.1541 -1.6793 0.0002 17 7 10.8101 -0.5393 -0.0008 18 14 11.0906 -3.2955 0.0002 19 1 10.7329 -4.0749 -1.2122 20 1 12.5502 -3.0221 -0.0004 21 1 10.7330 -4.0747 1.2128 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2128 2.3203 -0.0010 26 1 1.3339 4.5114 0.0026 27 1 3.7920 4.6381 -0.0024 28 1 5.1344 2.5754 -0.0023 29 1 4.0219 -0.5621 0.8903 30 1 4.0213 -0.5632 -0.8898 31 1 8.2821 0.1937 -0.8910 32 1 8.2827 0.1956 0.8890 33 1 11.7800 -0.5378 -0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:32 Heat of formation + Delta-G solvation = -125.435362 kcal Electronic energy + Delta-G solvation = -17390.949245 eV Core-core repulsion = 14381.248193 eV Total energy + Delta-G solvation = -3009.701051 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.56658 -40.93815 -38.45756 -37.42135 -35.21405 -33.27789 -31.29026 -31.09401 -28.38081 -27.55276 -25.83926 -23.25057 -22.56271 -21.67941 -19.07701 -18.85039 -18.04132 -17.59252 -17.53079 -16.92867 -16.67171 -16.54372 -15.86447 -15.33260 -15.00920 -14.59284 -14.48769 -14.26750 -13.62030 -13.42348 -13.22248 -12.89906 -12.83621 -12.61708 -12.32084 -12.07389 -12.02391 -11.88010 -11.80580 -11.55839 -11.22391 -10.66628 -9.84930 -9.16401 -8.29815 -6.40377 0.29053 0.43978 1.37308 1.41380 1.44995 1.52569 1.79506 2.34182 2.42071 2.74723 3.05679 3.61299 3.91056 4.06371 4.09880 4.21813 4.26696 4.34602 4.40294 4.44662 4.55917 4.72768 4.78857 4.99640 5.01382 5.11499 5.29992 5.31184 5.49519 5.63374 5.67780 5.84632 5.95877 6.40130 6.69889 6.97496 7.29013 8.82297 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.040062 B = 0.004212 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.740376 B = 6646.172680 C = 7319.165065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.121 3.879 4 C -0.205 4.205 5 C -0.075 4.075 6 C -0.158 4.158 7 C -0.077 4.077 8 C -0.147 4.147 9 C 0.119 3.881 10 O -0.359 6.359 11 C 0.471 3.529 12 O -0.541 6.541 13 C 0.035 3.965 14 C -0.549 4.549 15 H 0.061 0.939 16 C 0.015 3.985 17 N -0.921 5.921 18 Si 0.972 3.028 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.270 1.270 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.160 0.840 26 H 0.162 0.838 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.893 9.050 0.002 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.076 3.924 4 C -0.223 4.223 5 C -0.092 4.092 6 C -0.176 4.176 7 C -0.095 4.095 8 C -0.148 4.148 9 C 0.046 3.954 10 O -0.276 6.276 11 C 0.317 3.683 12 O -0.430 6.430 13 C -0.002 4.002 14 C -0.587 4.587 15 H 0.080 0.920 16 C -0.185 4.185 17 N -0.560 5.560 18 Si 0.796 3.204 19 H -0.196 1.196 20 H -0.197 1.197 21 H -0.195 1.195 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.131 0.869 25 H 0.177 0.823 26 H 0.179 0.821 27 H 0.167 0.833 28 H 0.147 0.853 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.806 8.601 0.002 22.514 hybrid contribution 0.432 -0.894 0.000 0.993 sum -20.374 7.707 0.002 21.783 Atomic orbital electron populations 1.23379 0.76006 1.05530 1.02684 1.86081 1.23968 1.26962 1.88575 1.18828 0.90536 0.85735 0.97307 1.21500 1.01248 0.91317 1.08235 1.21414 0.94441 0.98046 0.95342 1.21411 0.94582 0.98470 1.03104 1.21047 1.00994 0.91145 0.96343 1.19019 0.90914 0.94666 1.10221 1.21367 0.76644 0.95389 1.02047 1.86493 1.17828 1.38925 1.84354 1.24785 0.90767 0.82619 0.70126 1.90486 1.80808 1.24607 1.47146 1.18925 0.81564 0.99386 1.00321 1.21308 0.91933 0.92517 1.52935 0.92029 1.25821 0.98076 1.00695 0.93917 1.70032 1.08704 1.27191 1.50067 0.85396 0.77225 0.78735 0.79062 1.19551 1.19693 1.19539 0.91110 0.91120 0.86872 0.82273 0.82089 0.83333 0.85273 0.91285 0.91277 0.92649 0.92647 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.56 9.92 -92.39 -0.92 -9.48 16 3 C 0.12 3.14 6.66 22.51 0.15 3.29 16 4 C -0.20 -3.82 9.04 22.37 0.20 -3.62 16 5 C -0.07 -1.27 10.04 22.26 0.22 -1.04 16 6 C -0.16 -3.29 10.04 22.28 0.22 -3.07 16 7 C -0.08 -2.18 9.38 22.25 0.21 -1.97 16 8 C -0.15 -4.56 5.89 -19.77 -0.12 -4.68 16 9 C 0.12 4.41 5.33 71.23 0.38 4.79 16 10 O -0.36 -15.15 8.69 -51.42 -0.45 -15.60 16 11 C 0.47 23.39 7.95 71.24 0.57 23.96 16 12 O -0.54 -29.24 15.21 21.98 0.33 -28.91 16 13 C 0.04 1.89 5.57 29.10 0.16 2.06 16 14 C -0.55 -32.47 8.92 25.60 0.23 -32.24 16 15 H 0.06 3.76 6.76 -2.91 -0.02 3.74 16 16 C 0.01 0.83 5.46 84.65 0.46 1.29 16 17 N -0.92 -53.86 13.29 21.45 0.28 -53.58 16 18 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 23 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 24 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.16 1.89 6.30 -2.91 -0.02 1.87 16 26 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 27 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.13 3.90 6.99 -2.91 -0.02 3.88 16 29 H 0.07 2.61 8.13 -2.38 -0.02 2.59 16 30 H 0.07 2.61 8.13 -2.39 -0.02 2.59 16 31 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16 33 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -69.83 292.55 6.20 -63.64 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.11 Total: 6.90 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 3.80 Total: -9.88 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.28 Total: -53.58 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -1.03 Total: -53.98 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -69.83 6.20 -63.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.797 kcal (2) G-P(sol) polarization free energy of solvation -69.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds