Wall clock time and date at job start Mon Mar 30 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47250 * 2 1 4 4 C 1.35961 * 117.00097 * 179.97438 * 3 2 1 5 5 C 1.38593 * 120.07922 * 359.97438 * 4 3 2 6 6 C 1.38215 * 120.00400 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.14791 * 359.97438 * 6 5 4 8 8 C 1.38219 * 120.15517 * 0.02562 * 7 6 5 9 9 C 1.38588 * 119.99863 * 359.97438 * 8 7 6 10 10 O 1.35988 * 120.07332 * 180.02562 * 9 8 7 11 11 C 1.34241 * 117.00027 * 261.12214 * 10 9 8 12 12 O 1.20826 * 120.00142 * 5.41713 * 11 10 9 13 13 C 1.50699 * 119.99859 * 185.42159 * 11 10 9 14 14 C 1.50696 * 109.47001 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00345 * 0.02562 * 14 13 11 16 16 C 1.37885 * 120.00187 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99680 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00364 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47001 * 90.00114 * 18 16 14 20 20 H 1.48495 * 109.47263 * 210.00171 * 18 16 14 21 21 H 1.48504 * 109.46672 * 330.00310 * 18 16 14 22 22 H 1.08997 * 109.47484 * 59.99977 * 1 2 3 23 23 H 1.09005 * 109.47218 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47346 * 299.99483 * 1 2 3 25 25 H 1.09004 * 109.47074 * 240.00068 * 2 1 3 26 26 H 1.09000 * 109.47208 * 120.00463 * 2 1 3 27 27 H 1.08008 * 119.99501 * 0.02562 * 5 4 3 28 28 H 1.07998 * 119.92422 * 180.27807 * 6 5 4 29 29 H 1.08001 * 119.92085 * 180.02562 * 7 6 5 30 30 H 1.08003 * 119.99999 * 179.97438 * 8 7 6 31 31 H 1.08997 * 109.47340 * 299.99869 * 13 11 10 32 32 H 1.08998 * 109.47502 * 59.99583 * 13 11 10 33 33 H 0.97004 * 120.00310 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5254 0.0005 5 6 4.2000 0.4275 0.0016 6 6 5.5700 0.6104 0.0027 7 6 6.1001 1.8874 0.0022 8 6 5.2625 2.9869 0.0011 9 6 3.8878 2.8107 0.0000 10 8 3.0623 3.8914 -0.0015 11 6 2.5446 4.2646 1.1795 12 8 2.8942 3.7102 2.1946 13 6 1.5274 5.3748 1.2392 14 6 1.1089 5.5962 2.6699 15 1 1.5370 4.9935 3.4572 16 6 0.1801 6.5689 2.9739 17 7 -0.3409 7.3031 2.0152 18 14 -0.3382 6.8438 4.7474 19 1 0.5548 7.8517 5.3734 20 1 -1.7395 7.3338 4.7833 21 1 -0.2418 5.5644 5.4952 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7884 -0.5711 0.0016 28 1 6.2278 -0.2461 -0.0010 29 1 7.1712 2.0261 0.0026 30 1 5.6793 3.9833 0.0012 31 1 1.9654 6.2907 0.8426 32 1 0.6560 5.1016 0.6442 33 1 -0.9946 7.9872 2.2289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:53 Heat of formation + Delta-G solvation = -97.726538 kcal Electronic energy + Delta-G solvation = -18007.612438 eV Core-core repulsion = 14999.112931 eV Total energy + Delta-G solvation = -3008.499506 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78245 -39.14235 -37.34789 -35.89411 -33.04469 -31.84408 -30.50564 -29.49917 -28.70435 -24.41580 -24.06399 -22.38464 -21.62930 -20.23118 -18.24452 -17.18264 -16.37807 -16.27337 -16.13413 -15.72340 -15.05399 -14.64191 -14.34414 -14.07985 -13.40845 -13.24490 -12.72655 -12.59147 -12.16958 -11.98120 -11.92397 -11.73551 -11.36014 -11.06522 -10.85024 -10.73128 -10.70648 -10.25658 -10.04988 -9.45457 -9.37436 -8.73802 -8.49926 -8.00586 -6.12313 -4.14272 1.25093 1.45950 3.18010 3.28312 3.32095 3.37012 3.42325 3.52189 4.04213 4.44014 4.78773 4.89146 4.91971 5.05220 5.15950 5.20882 5.25628 5.38500 5.48522 5.59021 5.78332 5.81642 6.09416 6.24042 6.31945 6.38437 6.49613 6.78321 7.14833 7.23735 7.25502 7.55660 7.88882 8.09547 8.89956 8.96917 9.50362 10.99572 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.006060 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.761078 B = 4619.424893 C = 5290.955233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.302 6.302 4 C 0.124 3.876 5 C -0.201 4.201 6 C -0.088 4.088 7 C -0.147 4.147 8 C -0.087 4.087 9 C 0.069 3.931 10 O -0.302 6.302 11 C 0.462 3.538 12 O -0.501 6.501 13 C 0.036 3.964 14 C -0.519 4.519 15 H 0.076 0.924 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 -13.927 -6.542 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.215 6.215 4 C 0.078 3.922 5 C -0.220 4.220 6 C -0.106 4.106 7 C -0.165 4.165 8 C -0.106 4.106 9 C 0.026 3.974 10 O -0.219 6.219 11 C 0.308 3.692 12 O -0.385 6.385 13 C -0.001 4.001 14 C -0.557 4.557 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.733 3.267 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.196 1.196 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.304 -13.815 -6.236 16.825 hybrid contribution -0.182 -0.114 0.897 0.922 sum 7.122 -13.929 -5.339 16.530 Atomic orbital electron populations 1.21774 0.92522 1.02543 1.04195 1.22798 0.96262 0.81993 1.00958 1.86215 1.18204 1.29140 1.87984 1.19288 0.83164 0.93376 0.96394 1.21094 0.94254 0.97504 1.09172 1.20912 0.94142 0.97321 0.98253 1.20879 0.99668 0.91878 1.04092 1.21116 0.90905 1.00278 0.98275 1.17988 0.89360 0.84051 1.05986 1.84815 1.57394 1.42312 1.37332 1.25747 0.80040 0.83985 0.79453 1.90511 1.58168 1.54571 1.35259 1.19122 0.90917 0.89440 1.00581 1.21136 1.24098 1.19031 0.91399 0.90565 1.24989 0.95787 0.95421 0.98095 1.69967 1.29357 1.22003 1.32096 0.86355 0.77628 0.78631 0.84063 1.20435 1.21078 1.19626 0.91339 0.90532 0.91035 0.92211 0.92151 0.85179 0.85625 0.85372 0.84621 0.92070 0.91901 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.15 0.38 -1.37 16 2 C 0.06 0.70 5.46 37.15 0.20 0.91 16 3 O -0.30 -5.50 9.87 -34.11 -0.34 -5.84 16 4 C 0.12 2.22 6.65 -39.10 -0.26 1.96 16 5 C -0.20 -2.80 9.04 -39.46 -0.36 -3.16 16 6 C -0.09 -1.08 10.04 -39.58 -0.40 -1.48 16 7 C -0.15 -1.90 10.04 -39.58 -0.40 -2.30 16 8 C -0.09 -1.40 9.98 -39.46 -0.39 -1.80 16 9 C 0.07 1.33 4.97 -39.11 -0.19 1.14 16 10 O -0.30 -6.70 9.81 -29.08 -0.29 -6.98 16 11 C 0.46 11.56 7.80 36.00 0.28 11.84 16 12 O -0.50 -13.53 15.20 -18.75 -0.28 -13.81 16 13 C 0.04 0.97 5.57 -29.04 -0.16 0.81 16 14 C -0.52 -15.14 8.92 -34.44 -0.31 -15.45 16 15 H 0.08 2.30 6.76 -52.49 -0.35 1.94 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 18 Si 0.91 22.00 29.54 -169.99 -5.02 16.97 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 26 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 27 H 0.13 1.43 6.30 -52.48 -0.33 1.10 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.14 1.97 8.06 -52.48 -0.42 1.54 16 31 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 294.81 15.07 4.44 4.44 Total: -1.00 -33.19 294.81 -6.45 -39.64 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.00 Total: -1.61 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.70 Total: -7.31 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.91 Total: -26.64 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.19 -6.45 -39.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.091 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds