Wall clock time and date at job start Mon Mar 30 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47250 * 2 1 4 4 C 1.35961 * 117.00097 * 179.97438 * 3 2 1 5 5 C 1.38593 * 120.07922 * 359.97438 * 4 3 2 6 6 C 1.38215 * 120.00400 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.14791 * 359.97438 * 6 5 4 8 8 C 1.38219 * 120.15517 * 0.02562 * 7 6 5 9 9 C 1.38588 * 119.99863 * 359.97438 * 8 7 6 10 10 O 1.35988 * 120.07332 * 180.02562 * 9 8 7 11 11 C 1.34241 * 117.00027 * 261.12214 * 10 9 8 12 12 O 1.20826 * 120.00142 * 5.41713 * 11 10 9 13 13 C 1.50699 * 119.99859 * 185.42159 * 11 10 9 14 14 C 1.50696 * 109.47001 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00345 * 0.02562 * 14 13 11 16 16 C 1.37885 * 120.00187 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99680 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00364 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47001 * 90.00114 * 18 16 14 20 20 H 1.48495 * 109.47263 * 210.00171 * 18 16 14 21 21 H 1.48504 * 109.46672 * 330.00310 * 18 16 14 22 22 H 1.08997 * 109.47484 * 59.99977 * 1 2 3 23 23 H 1.09005 * 109.47218 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47346 * 299.99483 * 1 2 3 25 25 H 1.09004 * 109.47074 * 240.00068 * 2 1 3 26 26 H 1.09000 * 109.47208 * 120.00463 * 2 1 3 27 27 H 1.08008 * 119.99501 * 0.02562 * 5 4 3 28 28 H 1.07998 * 119.92422 * 180.27807 * 6 5 4 29 29 H 1.08001 * 119.92085 * 180.02562 * 7 6 5 30 30 H 1.08003 * 119.99999 * 179.97438 * 8 7 6 31 31 H 1.08997 * 109.47340 * 299.99869 * 13 11 10 32 32 H 1.08998 * 109.47502 * 59.99583 * 13 11 10 33 33 H 0.97004 * 120.00310 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5254 0.0005 5 6 4.2000 0.4275 0.0016 6 6 5.5700 0.6104 0.0027 7 6 6.1001 1.8874 0.0022 8 6 5.2625 2.9869 0.0011 9 6 3.8878 2.8107 0.0000 10 8 3.0623 3.8914 -0.0015 11 6 2.5446 4.2646 1.1795 12 8 2.8942 3.7102 2.1946 13 6 1.5274 5.3748 1.2392 14 6 1.1089 5.5962 2.6699 15 1 1.5370 4.9935 3.4572 16 6 0.1801 6.5689 2.9739 17 7 -0.3409 7.3031 2.0152 18 14 -0.3382 6.8438 4.7474 19 1 0.5548 7.8517 5.3734 20 1 -1.7395 7.3338 4.7833 21 1 -0.2418 5.5644 5.4952 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7884 -0.5711 0.0016 28 1 6.2278 -0.2461 -0.0010 29 1 7.1712 2.0261 0.0026 30 1 5.6793 3.9833 0.0012 31 1 1.9654 6.2907 0.8426 32 1 0.6560 5.1016 0.6442 33 1 -0.9946 7.9872 2.2289 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:53 Heat of formation + Delta-G solvation = -117.436430 kcal Electronic energy + Delta-G solvation = -18008.467123 eV Core-core repulsion = 14999.112931 eV Total energy + Delta-G solvation = -3009.354191 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.30270 -40.60003 -38.63246 -37.59527 -35.24951 -32.85645 -31.89373 -31.16615 -30.15753 -26.41841 -25.13348 -23.91685 -22.73786 -21.86044 -19.59786 -18.85174 -18.23529 -17.88532 -17.77665 -17.05706 -16.49180 -16.27225 -15.89066 -15.36745 -14.66039 -14.64018 -14.40648 -14.05456 -13.61650 -13.44292 -13.06722 -12.96108 -12.90255 -12.82253 -12.64263 -12.26482 -12.11099 -11.73669 -11.71526 -11.58808 -11.37861 -10.69893 -9.94694 -9.22828 -8.32494 -6.43912 0.03255 0.32153 1.30033 1.38982 1.41083 1.52995 1.94127 2.19212 2.39954 2.77113 3.02395 3.72202 3.82421 3.98603 4.02682 4.12918 4.24140 4.32826 4.36564 4.49445 4.76838 4.81434 4.86218 4.97053 5.03870 5.10989 5.20999 5.23533 5.39840 5.49571 5.63619 5.77906 5.91040 6.34422 6.66180 7.04212 7.25634 8.79986 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.006060 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.761078 B = 4619.424893 C = 5290.955233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.342 6.342 4 C 0.102 3.898 5 C -0.200 4.200 6 C -0.070 4.070 7 C -0.140 4.140 8 C -0.098 4.098 9 C 0.005 3.995 10 O -0.302 6.302 11 C 0.470 3.530 12 O -0.527 6.527 13 C 0.039 3.961 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.014 3.986 17 N -0.921 5.921 18 Si 0.975 3.025 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.273 1.273 22 H 0.061 0.939 23 H 0.113 0.887 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.162 0.838 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.140 0.860 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 -16.017 -6.231 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.257 6.257 4 C 0.056 3.944 5 C -0.218 4.218 6 C -0.088 4.088 7 C -0.158 4.158 8 C -0.117 4.117 9 C -0.037 4.037 10 O -0.218 6.218 11 C 0.317 3.683 12 O -0.414 6.414 13 C 0.002 3.998 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.185 4.185 17 N -0.560 5.560 18 Si 0.798 3.202 19 H -0.192 1.192 20 H -0.195 1.195 21 H -0.197 1.197 22 H 0.080 0.920 23 H 0.132 0.868 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.179 0.821 28 H 0.192 0.808 29 H 0.185 0.815 30 H 0.157 0.843 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.712 -15.909 -5.963 19.094 hybrid contribution -0.518 0.404 0.693 0.955 sum 8.194 -15.505 -5.270 18.312 Atomic orbital electron populations 1.21834 0.92053 1.04431 1.02572 1.23157 0.96751 0.80250 1.02745 1.86167 1.18929 1.32318 1.88289 1.19601 0.83687 0.93905 0.97230 1.21531 0.94784 0.97654 1.07861 1.21542 0.93970 0.98591 0.94695 1.21374 1.01204 0.91151 1.02082 1.21389 0.90001 1.01997 0.98276 1.18618 0.90408 0.83832 1.10826 1.84739 1.57925 1.43802 1.35310 1.25199 0.79686 0.83304 0.80134 1.90460 1.59217 1.55373 1.36369 1.18914 0.91225 0.90154 0.99556 1.21276 1.25283 1.19838 0.92026 0.92126 1.25862 0.95259 0.94647 1.02771 1.70049 1.29508 1.22202 1.34225 0.85307 0.77971 0.78568 0.78358 1.19216 1.19492 1.19736 0.92031 0.86817 0.93556 0.89379 0.91088 0.82052 0.80817 0.81452 0.84251 0.92686 0.93159 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 10.28 71.98 0.74 -2.69 16 2 C 0.04 1.11 5.46 71.98 0.39 1.50 16 3 O -0.34 -12.79 9.87 -79.25 -0.78 -13.57 16 4 C 0.10 3.63 6.65 22.58 0.15 3.78 16 5 C -0.20 -5.00 9.04 22.35 0.20 -4.80 16 6 C -0.07 -1.41 10.04 22.27 0.22 -1.18 16 7 C -0.14 -3.15 10.04 22.27 0.22 -2.93 16 8 C -0.10 -3.11 9.98 22.35 0.22 -2.89 16 9 C 0.00 0.19 4.97 22.58 0.11 0.30 16 10 O -0.30 -14.18 9.81 9.12 0.09 -14.09 16 11 C 0.47 24.86 7.80 71.24 0.56 25.42 16 12 O -0.53 -29.84 15.20 21.96 0.33 -29.50 16 13 C 0.04 2.19 5.57 29.10 0.16 2.35 16 14 C -0.55 -33.13 8.92 25.60 0.23 -32.90 16 15 H 0.06 3.80 6.76 -2.91 -0.02 3.78 16 16 C 0.01 0.82 5.46 84.66 0.46 1.28 16 17 N -0.92 -54.77 13.29 21.45 0.28 -54.48 16 18 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.62 7.67 -2.39 -0.02 1.61 16 26 H 0.07 1.56 7.66 -2.39 -0.02 1.54 16 27 H 0.16 2.90 6.30 -2.91 -0.02 2.88 16 28 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 29 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 31 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.05 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -75.45 294.81 6.74 -68.71 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 1.11 Total: 8.29 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 3.68 Total: -12.76 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.28 Total: -54.48 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: -0.36 Total: -57.17 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.45 6.74 -68.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.722 kcal (2) G-P(sol) polarization free energy of solvation -75.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds