Wall clock time and date at job start Mon Mar 30 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47335 * 2 1 4 4 C 1.35965 * 116.99971 * 179.97438 * 3 2 1 5 5 C 1.38723 * 119.99870 * 359.72897 * 4 3 2 6 6 C 1.38108 * 119.99836 * 179.78961 * 5 4 3 7 7 C 1.38715 * 120.00063 * 0.45980 * 6 5 4 8 8 O 1.35987 * 120.00019 * 179.77018 * 7 6 5 9 9 C 1.34241 * 116.99821 * 249.01147 * 8 7 6 10 10 O 1.20829 * 119.99797 * 5.77513 * 9 8 7 11 11 C 1.50706 * 119.99994 * 185.77452 * 9 8 7 12 12 C 1.50698 * 109.46993 * 180.02562 * 11 9 8 13 13 H 1.07999 * 120.00056 * 359.97438 * 12 11 9 14 14 C 1.37876 * 119.99713 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00067 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99925 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47363 * 89.99752 * 16 14 12 18 18 H 1.48502 * 109.47101 * 209.99910 * 16 14 12 19 19 H 1.48498 * 109.46763 * 329.99477 * 16 14 12 20 20 C 1.38717 * 120.00045 * 359.78864 * 7 6 5 21 21 C 1.38111 * 119.99916 * 359.97438 * 20 7 6 22 22 H 1.08995 * 109.47778 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47079 * 300.00278 * 1 2 3 24 24 H 1.09002 * 109.46979 * 59.99497 * 1 2 3 25 25 H 1.08996 * 109.47229 * 239.99412 * 2 1 3 26 26 H 1.09006 * 109.46384 * 120.00087 * 2 1 3 27 27 H 1.07997 * 119.99965 * 0.02562 * 5 4 3 28 28 H 1.07997 * 120.00254 * 180.20562 * 6 5 4 29 29 H 1.08996 * 109.46796 * 300.00327 * 11 9 8 30 30 H 1.09000 * 109.47056 * 60.00185 * 11 9 8 31 31 H 0.97001 * 119.99719 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.00336 * 179.97438 * 20 7 6 33 33 H 1.07996 * 120.00080 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3543 1.5253 0.0005 5 6 4.1993 0.4251 0.0067 6 6 5.5684 0.6060 0.0029 7 6 6.0987 1.8878 0.0025 8 8 7.4469 2.0659 0.0034 9 6 7.9940 2.5712 1.1203 10 8 7.3109 2.7477 2.1012 11 6 9.4603 2.9181 1.1507 12 6 9.8198 3.4618 2.5094 13 1 9.0622 3.5480 3.2743 14 6 11.1156 3.8503 2.7757 15 7 12.0380 3.7459 1.8441 16 14 11.5614 4.5236 4.4601 17 1 11.9777 3.4065 5.3455 18 1 12.6792 5.4920 4.3262 19 1 10.3816 5.2078 5.0477 20 6 5.2538 2.9879 0.0015 21 6 3.8846 2.8071 0.0004 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8901 27 1 3.7864 -0.5728 0.0107 28 1 6.2263 -0.2505 0.0044 29 1 10.0496 2.0234 0.9502 30 1 9.6715 3.6702 0.3905 31 1 12.9497 4.0189 2.0316 32 1 5.6666 3.9859 0.0016 33 1 3.2267 3.6636 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049817065.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:57 Heat of formation + Delta-G solvation = -99.784154 kcal Electronic energy + Delta-G solvation = -17290.899354 eV Core-core repulsion = 14282.310622 eV Total energy + Delta-G solvation = -3008.588731 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72342 -39.68813 -37.32770 -35.74460 -33.10310 -32.07226 -30.96974 -29.63282 -28.43463 -24.57174 -24.06577 -22.44713 -21.94049 -20.15118 -18.38777 -17.44994 -16.44145 -16.31216 -16.25120 -15.92990 -14.97955 -14.59948 -14.38225 -13.74722 -13.51508 -13.49773 -13.22296 -12.82499 -12.37523 -12.27944 -12.05906 -11.78063 -11.57293 -11.13538 -10.90527 -10.79948 -10.73696 -10.26296 -10.09757 -9.47938 -9.40210 -9.01085 -8.54705 -7.96662 -6.17274 -4.19899 1.31466 1.34444 3.04376 3.14379 3.29557 3.34411 3.37453 3.46902 3.99982 4.40527 4.65165 4.65727 4.81068 4.91632 4.97632 5.15930 5.20925 5.30127 5.42316 5.49584 5.56503 5.72006 5.87429 5.99310 6.27157 6.32746 6.51412 6.70515 7.07376 7.15419 7.21547 7.40031 7.83889 8.02903 8.80055 8.90718 9.45556 10.94494 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.053147 B = 0.003834 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.715889 B = 7301.555794 C = 7490.904734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.317 6.317 4 C 0.118 3.882 5 C -0.194 4.194 6 C -0.086 4.086 7 C 0.066 3.934 8 O -0.308 6.308 9 C 0.457 3.543 10 O -0.498 6.498 11 C 0.035 3.965 12 C -0.522 4.522 13 H 0.077 0.923 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.907 3.093 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.271 1.271 20 C -0.088 4.088 21 C -0.135 4.135 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.265 0.735 32 H 0.135 0.865 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.910 -7.129 -6.102 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.231 6.231 4 C 0.073 3.927 5 C -0.213 4.213 6 C -0.104 4.104 7 C 0.024 3.976 8 O -0.225 6.225 9 C 0.303 3.697 10 O -0.382 6.382 11 C -0.002 4.002 12 C -0.560 4.560 13 H 0.095 0.905 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.734 3.266 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.107 4.107 21 C -0.153 4.153 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.100 -6.913 -5.806 20.226 hybrid contribution 0.396 0.076 0.844 0.935 sum -17.704 -6.836 -4.962 19.616 Atomic orbital electron populations 1.21770 0.92830 1.02759 1.03506 1.22772 0.95781 0.82206 1.01464 1.86063 1.19031 1.29097 1.88937 1.18931 0.82135 0.94094 0.97561 1.21024 0.93358 0.98121 1.08810 1.20909 0.94656 0.96325 0.98527 1.18571 0.82802 0.93000 1.03255 1.84814 1.18926 1.76599 1.42140 1.25816 0.93218 0.71814 0.78888 1.90541 1.63834 1.48889 1.34923 1.19151 0.80592 0.99643 1.00779 1.21139 0.95340 1.42742 0.96771 0.90477 1.24994 0.96012 0.95473 0.97796 1.69961 1.02523 1.47598 1.33294 0.86340 0.78108 0.78808 0.83343 1.20429 1.21059 1.19554 1.21195 0.92539 0.99092 0.97826 1.20220 0.94362 0.94970 1.05795 0.90446 0.91510 0.91561 0.92031 0.91998 0.85077 0.84886 0.91944 0.91865 0.92543 0.84751 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.46 5.46 37.16 0.20 0.66 16 3 O -0.32 -3.93 10.14 -19.63 -0.20 -4.13 16 4 C 0.12 1.64 6.69 -39.23 -0.26 1.38 16 5 C -0.19 -2.59 9.03 -39.45 -0.36 -2.94 16 6 C -0.09 -1.33 9.98 -39.45 -0.39 -1.72 16 7 C 0.07 1.20 5.27 -39.23 -0.21 0.99 16 8 O -0.31 -6.34 10.04 -23.76 -0.24 -6.58 16 9 C 0.46 10.78 7.73 36.01 0.28 11.06 16 10 O -0.50 -12.80 14.87 -18.75 -0.28 -13.08 16 11 C 0.04 0.90 5.57 -29.03 -0.16 0.74 16 12 C -0.52 -14.83 8.92 -34.44 -0.31 -15.14 16 13 H 0.08 2.26 6.76 -52.49 -0.35 1.91 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 16 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.09 -1.47 9.32 -39.45 -0.37 -1.84 16 21 C -0.13 -1.97 9.98 -39.45 -0.39 -2.36 16 22 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 26 H 0.06 0.50 7.65 -51.93 -0.40 0.11 16 27 H 0.13 1.34 6.29 -52.49 -0.33 1.01 16 28 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -31.47 294.44 -6.25 -37.72 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -4.00 Total: -1.74 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.68 Total: -8.23 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.74 Total: -25.03 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.72 Total: -23.78 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.47 -6.25 -37.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817065.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.067 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds