Wall clock time and date at job start Mon Mar 30 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47335 * 2 1 4 4 C 1.35965 * 116.99971 * 179.97438 * 3 2 1 5 5 C 1.38723 * 119.99870 * 359.72897 * 4 3 2 6 6 C 1.38108 * 119.99836 * 179.78961 * 5 4 3 7 7 C 1.38715 * 120.00063 * 0.45980 * 6 5 4 8 8 O 1.35987 * 120.00019 * 179.77018 * 7 6 5 9 9 C 1.34241 * 116.99821 * 249.01147 * 8 7 6 10 10 O 1.20829 * 119.99797 * 5.77513 * 9 8 7 11 11 C 1.50706 * 119.99994 * 185.77452 * 9 8 7 12 12 C 1.50698 * 109.46993 * 180.02562 * 11 9 8 13 13 H 1.07999 * 120.00056 * 359.97438 * 12 11 9 14 14 C 1.37876 * 119.99713 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00067 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99925 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47363 * 89.99752 * 16 14 12 18 18 H 1.48502 * 109.47101 * 209.99910 * 16 14 12 19 19 H 1.48498 * 109.46763 * 329.99477 * 16 14 12 20 20 C 1.38717 * 120.00045 * 359.78864 * 7 6 5 21 21 C 1.38111 * 119.99916 * 359.97438 * 20 7 6 22 22 H 1.08995 * 109.47778 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47079 * 300.00278 * 1 2 3 24 24 H 1.09002 * 109.46979 * 59.99497 * 1 2 3 25 25 H 1.08996 * 109.47229 * 239.99412 * 2 1 3 26 26 H 1.09006 * 109.46384 * 120.00087 * 2 1 3 27 27 H 1.07997 * 119.99965 * 0.02562 * 5 4 3 28 28 H 1.07997 * 120.00254 * 180.20562 * 6 5 4 29 29 H 1.08996 * 109.46796 * 300.00327 * 11 9 8 30 30 H 1.09000 * 109.47056 * 60.00185 * 11 9 8 31 31 H 0.97001 * 119.99719 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.00336 * 179.97438 * 20 7 6 33 33 H 1.07996 * 120.00080 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3543 1.5253 0.0005 5 6 4.1993 0.4251 0.0067 6 6 5.5684 0.6060 0.0029 7 6 6.0987 1.8878 0.0025 8 8 7.4469 2.0659 0.0034 9 6 7.9940 2.5712 1.1203 10 8 7.3109 2.7477 2.1012 11 6 9.4603 2.9181 1.1507 12 6 9.8198 3.4618 2.5094 13 1 9.0622 3.5480 3.2743 14 6 11.1156 3.8503 2.7757 15 7 12.0380 3.7459 1.8441 16 14 11.5614 4.5236 4.4601 17 1 11.9777 3.4065 5.3455 18 1 12.6792 5.4920 4.3262 19 1 10.3816 5.2078 5.0477 20 6 5.2538 2.9879 0.0015 21 6 3.8846 2.8071 0.0004 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8901 27 1 3.7864 -0.5728 0.0107 28 1 6.2263 -0.2505 0.0044 29 1 10.0496 2.0234 0.9502 30 1 9.6715 3.6702 0.3905 31 1 12.9497 4.0189 2.0316 32 1 5.6666 3.9859 0.0016 33 1 3.2267 3.6636 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049817065.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:57 Heat of formation + Delta-G solvation = -117.487841 kcal Electronic energy + Delta-G solvation = -17291.667043 eV Core-core repulsion = 14282.310622 eV Total energy + Delta-G solvation = -3009.356421 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.24034 -40.88105 -38.72174 -37.26394 -35.23661 -32.85443 -32.07824 -31.50686 -29.80534 -26.37672 -25.12773 -23.80296 -23.08676 -21.66912 -19.45897 -19.09891 -18.31990 -17.86690 -17.72633 -17.05359 -16.44914 -16.34481 -15.66659 -15.13386 -14.73376 -14.57237 -14.38490 -14.19657 -13.81911 -13.60038 -13.25717 -13.05585 -12.87352 -12.77351 -12.64285 -12.30911 -12.11024 -11.72722 -11.57006 -11.53527 -11.29748 -10.68562 -10.18093 -9.17142 -8.31636 -6.42508 0.04822 0.17807 1.28535 1.41216 1.42289 1.54279 1.89089 2.18171 2.40496 2.70095 3.04006 3.69151 3.75080 3.92209 4.07670 4.14859 4.17492 4.31928 4.39950 4.51048 4.78442 4.86389 4.93927 4.96116 5.01282 5.07353 5.09911 5.26791 5.27964 5.39658 5.61203 5.74108 5.92992 6.34564 6.68252 7.01649 7.27381 8.80502 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.053147 B = 0.003834 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.715889 B = 7301.555794 C = 7490.904734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 O -0.325 6.325 4 C 0.126 3.874 5 C -0.186 4.186 6 C -0.086 4.086 7 C 0.017 3.983 8 O -0.302 6.302 9 C 0.468 3.532 10 O -0.523 6.523 11 C 0.037 3.963 12 C -0.548 4.548 13 H 0.062 0.938 14 C 0.015 3.985 15 N -0.921 5.921 16 Si 0.972 3.028 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.099 4.099 21 C -0.141 4.141 22 H 0.101 0.899 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.168 0.832 28 H 0.148 0.852 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.464 -8.172 -5.810 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 O -0.239 6.239 4 C 0.081 3.919 5 C -0.205 4.205 6 C -0.104 4.104 7 C -0.025 4.025 8 O -0.218 6.218 9 C 0.314 3.686 10 O -0.410 6.410 11 C 0.000 4.000 12 C -0.585 4.585 13 H 0.080 0.920 14 C -0.185 4.185 15 N -0.560 5.560 16 Si 0.796 3.204 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.118 4.118 21 C -0.160 4.160 22 H 0.120 0.880 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.185 0.815 28 H 0.166 0.834 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.670 -7.973 -5.547 21.937 hybrid contribution 0.682 0.311 0.663 1.001 sum -18.988 -7.661 -4.883 21.050 Atomic orbital electron populations 1.21808 0.91270 1.04281 1.03225 1.23175 0.97101 0.80539 1.02680 1.86085 1.17791 1.31720 1.88314 1.19066 0.83173 0.93946 0.95751 1.21363 0.92213 0.99751 1.07143 1.21146 0.95982 0.95577 0.97733 1.18982 0.81454 0.94855 1.07161 1.84753 1.20950 1.75794 1.40309 1.25236 0.92463 0.71583 0.79334 1.90509 1.64294 1.50171 1.36038 1.18953 0.82346 0.99124 0.99602 1.21315 0.95629 1.43916 0.97656 0.91960 1.25820 0.95675 0.95360 1.01637 1.70037 1.02994 1.47866 1.35087 0.85339 0.77915 0.78479 0.78681 1.19455 1.19724 1.19645 1.21241 0.93543 0.98586 0.98408 1.20414 0.93646 0.96416 1.05487 0.88015 0.92012 0.91658 0.90431 0.91052 0.81453 0.83447 0.92493 0.92463 0.91969 0.85404 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.04 0.55 5.46 71.98 0.39 0.94 16 3 O -0.32 -7.19 10.14 -93.15 -0.94 -8.13 16 4 C 0.13 3.25 6.69 22.50 0.15 3.40 16 5 C -0.19 -4.47 9.03 22.35 0.20 -4.27 16 6 C -0.09 -2.56 9.98 22.35 0.22 -2.33 16 7 C 0.02 0.61 5.27 22.50 0.12 0.73 16 8 O -0.30 -12.75 10.04 4.05 0.04 -12.71 16 9 C 0.47 22.73 7.73 71.24 0.55 23.28 16 10 O -0.52 -27.65 14.87 21.95 0.33 -27.32 16 11 C 0.04 1.95 5.57 29.10 0.16 2.11 16 12 C -0.55 -31.80 8.92 25.60 0.23 -31.57 16 13 H 0.06 3.74 6.76 -2.91 -0.02 3.72 16 14 C 0.01 0.83 5.46 84.65 0.46 1.29 16 15 N -0.92 -53.29 13.29 21.45 0.28 -53.00 16 16 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 20 C -0.10 -3.36 9.32 22.35 0.21 -3.15 16 21 C -0.14 -3.99 9.98 22.35 0.22 -3.77 16 22 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16 23 H 0.06 0.69 8.14 -2.38 -0.02 0.68 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 0.87 7.67 -2.39 -0.02 0.85 16 26 H 0.07 0.89 7.65 -2.38 -0.02 0.87 16 27 H 0.17 2.72 6.29 -2.91 -0.02 2.70 16 28 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 29 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 33 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -67.64 294.44 6.50 -61.14 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.11 Total: 7.79 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 3.66 Total: -14.11 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.28 Total: -53.00 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -0.58 Total: -48.17 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -67.64 6.50 -61.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049817065.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.347 kcal (2) G-P(sol) polarization free energy of solvation -67.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds