Wall clock time and date at job start Mon Mar 30 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46795 * 2 1 4 4 C 1.50693 * 109.47217 * 120.00004 * 2 1 3 5 5 C 1.38262 * 119.99651 * 72.94187 * 4 2 1 6 6 C 1.38217 * 119.99421 * 179.76676 * 5 4 2 7 7 C 1.38257 * 120.00207 * 0.50242 * 6 5 4 8 8 C 1.38211 * 119.99763 * 359.74674 * 7 6 5 9 9 N 1.48020 * 119.99400 * 179.97438 * 8 7 6 10 10 O 1.21803 * 119.99741 * 180.02562 * 9 8 7 11 11 O 1.21799 * 120.00297 * 0.02562 * 9 8 7 12 12 C 1.38216 * 120.00303 * 253.20549 * 4 2 1 13 13 N 1.46503 * 109.47208 * 240.00590 * 2 1 3 14 14 C 1.46490 * 120.00123 * 174.56786 * 13 2 1 15 15 C 1.36934 * 119.99638 * 354.56777 * 13 2 1 16 16 H 1.08005 * 120.00430 * 17.23855 * 15 13 2 17 17 C 1.38816 * 119.99747 * 197.24380 * 15 13 2 18 18 N 1.31618 * 120.00224 * 17.06091 * 17 15 13 19 19 Si 1.86807 * 119.99880 * 197.06899 * 17 15 13 20 20 H 1.48501 * 109.47281 * 89.99413 * 19 17 15 21 21 H 1.48501 * 109.47012 * 209.99549 * 19 17 15 22 22 H 1.48498 * 109.46777 * 329.99338 * 19 17 15 23 23 H 1.08998 * 109.47707 * 59.99755 * 1 2 3 24 24 H 1.09003 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46944 * 299.99487 * 1 2 3 26 26 H 1.07994 * 120.00000 * 359.97438 * 5 4 2 27 27 H 1.08003 * 119.99329 * 180.22588 * 6 5 4 28 28 H 1.08000 * 119.99546 * 179.73046 * 7 6 5 29 29 H 1.07997 * 119.99504 * 0.02562 * 12 4 2 30 30 H 1.09005 * 109.47375 * 354.54493 * 14 13 2 31 31 H 1.09005 * 109.46963 * 114.54497 * 14 13 2 32 32 H 1.08998 * 109.47163 * 234.54416 * 14 13 2 33 33 H 0.96999 * 120.00044 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.9316 -2.0861 1.3238 6 6 2.3967 -2.7381 2.4503 7 6 2.9533 -2.0136 3.4881 8 6 3.0492 -0.6379 3.3968 9 7 3.6445 0.1377 4.5081 10 8 3.7287 1.3502 4.4279 11 8 4.0502 -0.4364 5.5027 12 6 2.5888 0.0138 2.2678 13 7 2.0184 -0.6905 -1.1963 14 6 3.4532 -0.7213 -1.4898 15 6 1.1335 -1.3071 -2.0400 16 1 0.0827 -1.0618 -1.9938 17 6 1.5871 -2.2477 -2.9546 18 7 2.7741 -2.7954 -2.8017 19 14 0.5128 -2.7359 -4.4028 20 1 0.7988 -1.8431 -5.5545 21 1 0.8028 -4.1420 -4.7825 22 1 -0.9172 -2.6108 -4.0226 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.4925 -2.6516 0.5152 27 1 2.3214 -3.8131 2.5217 28 1 3.3127 -2.5228 4.3701 29 1 2.6632 1.0889 2.1967 30 1 3.9852 -0.1018 -0.7676 31 1 3.8154 -1.7473 -1.4249 32 1 3.6267 -0.3376 -2.4951 33 1 3.0911 -3.4523 -3.4410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052687703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:29 Heat of formation + Delta-G solvation = 46.125175 kcal Electronic energy + Delta-G solvation = -18260.868791 eV Core-core repulsion = 15290.899914 eV Total energy + Delta-G solvation = -2969.968877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.94404 -39.38846 -36.40672 -36.26635 -32.80426 -31.53857 -30.43328 -29.07192 -26.24472 -25.90360 -23.92310 -22.38575 -22.23422 -20.30000 -18.47202 -18.22512 -17.31800 -16.42236 -16.21385 -15.48992 -15.18185 -14.38927 -13.86694 -13.60984 -13.38986 -12.89834 -12.12560 -12.05627 -11.76339 -11.51426 -11.37770 -11.35895 -10.98823 -10.97000 -10.95043 -10.74452 -10.61048 -10.45286 -10.01344 -9.85590 -9.21899 -8.80927 -8.79150 -7.04672 -5.80850 -3.34185 0.14305 1.26443 1.66448 1.69973 3.28068 3.35116 3.36592 3.64771 4.35495 4.64526 4.73765 5.12620 5.17333 5.26324 5.34123 5.38230 5.55659 5.83942 5.87177 5.95931 6.01687 6.22407 6.36507 6.47047 6.50149 6.58273 6.69791 6.84855 6.90565 7.20413 7.64865 7.71320 7.86785 8.21511 9.04722 9.68571 10.13835 11.13371 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.039156 B = 0.005650 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.920330 B = 4954.334217 C = 5113.286910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.206 3.794 3 H 0.049 0.951 4 C -0.083 4.083 5 C -0.027 4.027 6 C -0.125 4.125 7 C -0.072 4.072 8 C -0.054 4.054 9 N 0.036 4.964 10 O -0.172 6.172 11 O -0.178 6.178 12 C -0.062 4.062 13 N -0.590 5.590 14 C 0.142 3.858 15 C -0.261 4.261 16 H 0.081 0.919 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.153 0.847 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.002 0.998 31 H 0.073 0.927 32 H 0.018 0.982 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 1.533 8.338 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.097 3.903 3 H 0.067 0.933 4 C -0.087 4.087 5 C -0.045 4.045 6 C -0.144 4.144 7 C -0.091 4.091 8 C -0.137 4.137 9 N 0.552 4.448 10 O -0.387 6.387 11 O -0.391 6.391 12 C -0.082 4.082 13 N -0.312 5.312 14 C -0.003 4.003 15 C -0.390 4.390 16 H 0.099 0.901 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.171 0.829 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.020 0.980 31 H 0.091 0.909 32 H 0.037 0.963 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.161 1.044 7.666 8.033 hybrid contribution -0.101 -0.188 -0.503 0.547 sum -2.262 0.856 7.163 7.560 Atomic orbital electron populations 1.21876 0.94345 1.02545 1.00652 1.19513 0.93823 0.93836 0.83095 0.93303 1.21447 0.96790 0.94788 0.95676 1.21741 0.92012 0.94560 0.96226 1.21240 0.99427 1.00597 0.93104 1.20904 0.97216 0.90756 1.00232 1.21078 1.10349 0.92232 0.90011 1.43756 0.98081 1.01229 1.01754 1.94505 1.60891 0.96489 1.86824 1.94485 1.50631 1.72459 1.21515 1.20981 0.95234 1.01568 0.90423 1.44188 1.03837 1.62181 1.21006 1.21182 0.82288 1.01121 0.95683 1.19363 0.91397 1.16650 1.11546 0.90121 1.24958 0.97065 0.97223 1.00454 1.70002 1.19158 1.29144 1.36365 0.86249 0.79780 0.77447 0.83040 1.21477 1.21810 1.20441 0.91615 0.91664 0.93726 0.82940 0.84210 0.83906 0.83797 0.97958 0.90854 0.96319 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.77 37.16 0.29 -1.93 16 2 C 0.21 3.73 3.10 -69.08 -0.21 3.51 16 3 H 0.05 0.86 7.94 -51.93 -0.41 0.44 16 4 C -0.08 -1.39 4.54 -104.62 -0.47 -1.86 16 5 C -0.03 -0.45 9.19 -39.58 -0.36 -0.81 16 6 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 7 C -0.07 -1.01 9.56 -39.58 -0.38 -1.39 16 8 C -0.05 -0.85 6.85 -79.95 -0.55 -1.40 16 9 N 0.04 0.60 4.45 33.96 0.15 0.75 16 10 O -0.17 -2.99 18.45 -29.46 -0.54 -3.53 16 11 O -0.18 -3.00 18.45 -29.46 -0.54 -3.54 16 12 C -0.06 -0.98 9.18 -39.59 -0.36 -1.34 16 13 N -0.59 -13.13 2.55 -174.81 -0.45 -13.57 16 14 C 0.14 3.26 8.88 59.84 0.53 3.80 16 15 C -0.26 -6.29 8.85 -15.06 -0.13 -6.43 16 16 H 0.08 1.87 5.76 -52.48 -0.30 1.57 16 17 C 0.00 0.04 5.23 -17.43 -0.09 -0.05 16 18 N -0.90 -24.05 10.44 55.49 0.58 -23.47 16 19 Si 0.90 20.32 29.59 -169.99 -5.03 15.29 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H 0.06 1.09 7.46 -51.93 -0.39 0.70 16 24 H 0.06 1.11 7.37 -51.93 -0.38 0.72 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.15 2.84 7.94 -52.49 -0.42 2.42 16 27 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 28 H 0.14 1.73 7.61 -52.49 -0.40 1.34 16 29 H 0.14 2.11 7.54 -52.49 -0.40 1.71 16 30 H 0.00 0.03 7.90 -51.93 -0.41 -0.38 16 31 H 0.07 1.87 6.16 -51.93 -0.32 1.55 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 286.78 15.07 4.32 4.32 Total: -1.00 -26.71 286.78 -7.48 -34.19 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.83 Total: -0.40 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -2.14 Total: -10.04 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.28 Total: -36.30 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -1.09 Total: -7.07 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.71 -7.48 -34.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052687703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.317 kcal (2) G-P(sol) polarization free energy of solvation -26.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds