Wall clock time and date at job start Mon Mar 30 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46795 * 2 1 4 4 C 1.50693 * 109.47217 * 120.00004 * 2 1 3 5 5 C 1.38262 * 119.99651 * 72.94187 * 4 2 1 6 6 C 1.38217 * 119.99421 * 179.76676 * 5 4 2 7 7 C 1.38257 * 120.00207 * 0.50242 * 6 5 4 8 8 C 1.38211 * 119.99763 * 359.74674 * 7 6 5 9 9 N 1.48020 * 119.99400 * 179.97438 * 8 7 6 10 10 O 1.21803 * 119.99741 * 180.02562 * 9 8 7 11 11 O 1.21799 * 120.00297 * 0.02562 * 9 8 7 12 12 C 1.38216 * 120.00303 * 253.20549 * 4 2 1 13 13 N 1.46503 * 109.47208 * 240.00590 * 2 1 3 14 14 C 1.46490 * 120.00123 * 174.56786 * 13 2 1 15 15 C 1.36934 * 119.99638 * 354.56777 * 13 2 1 16 16 H 1.08005 * 120.00430 * 17.23855 * 15 13 2 17 17 C 1.38816 * 119.99747 * 197.24380 * 15 13 2 18 18 N 1.31618 * 120.00224 * 17.06091 * 17 15 13 19 19 Si 1.86807 * 119.99880 * 197.06899 * 17 15 13 20 20 H 1.48501 * 109.47281 * 89.99413 * 19 17 15 21 21 H 1.48501 * 109.47012 * 209.99549 * 19 17 15 22 22 H 1.48498 * 109.46777 * 329.99338 * 19 17 15 23 23 H 1.08998 * 109.47707 * 59.99755 * 1 2 3 24 24 H 1.09003 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46944 * 299.99487 * 1 2 3 26 26 H 1.07994 * 120.00000 * 359.97438 * 5 4 2 27 27 H 1.08003 * 119.99329 * 180.22588 * 6 5 4 28 28 H 1.08000 * 119.99546 * 179.73046 * 7 6 5 29 29 H 1.07997 * 119.99504 * 0.02562 * 12 4 2 30 30 H 1.09005 * 109.47375 * 354.54493 * 14 13 2 31 31 H 1.09005 * 109.46963 * 114.54497 * 14 13 2 32 32 H 1.08998 * 109.47163 * 234.54416 * 14 13 2 33 33 H 0.96999 * 120.00044 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.9316 -2.0861 1.3238 6 6 2.3967 -2.7381 2.4503 7 6 2.9533 -2.0136 3.4881 8 6 3.0492 -0.6379 3.3968 9 7 3.6445 0.1377 4.5081 10 8 3.7287 1.3502 4.4279 11 8 4.0502 -0.4364 5.5027 12 6 2.5888 0.0138 2.2678 13 7 2.0184 -0.6905 -1.1963 14 6 3.4532 -0.7213 -1.4898 15 6 1.1335 -1.3071 -2.0400 16 1 0.0827 -1.0618 -1.9938 17 6 1.5871 -2.2477 -2.9546 18 7 2.7741 -2.7954 -2.8017 19 14 0.5128 -2.7359 -4.4028 20 1 0.7988 -1.8431 -5.5545 21 1 0.8028 -4.1420 -4.7825 22 1 -0.9172 -2.6108 -4.0226 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.4925 -2.6516 0.5152 27 1 2.3214 -3.8131 2.5217 28 1 3.3127 -2.5228 4.3701 29 1 2.6632 1.0889 2.1967 30 1 3.9852 -0.1018 -0.7676 31 1 3.8154 -1.7473 -1.4249 32 1 3.6267 -0.3376 -2.4951 33 1 3.0911 -3.4523 -3.4410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052687703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:29 Heat of formation + Delta-G solvation = 33.986027 kcal Electronic energy + Delta-G solvation = -18261.395184 eV Core-core repulsion = 15290.899914 eV Total energy + Delta-G solvation = -2970.495270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.23666 -40.68324 -37.90789 -37.65440 -34.43865 -32.77708 -32.04834 -30.53025 -27.74644 -27.51853 -25.43861 -23.81705 -23.57764 -21.74788 -19.77602 -19.59225 -18.61135 -18.21940 -17.46410 -17.08965 -16.58401 -15.75576 -15.51646 -15.06285 -14.84498 -14.30341 -13.81272 -13.38531 -13.07680 -13.02862 -12.94119 -12.72852 -12.69114 -12.44577 -12.29507 -12.25849 -12.18355 -11.96113 -11.79112 -11.59646 -10.69468 -10.44762 -10.06384 -8.89004 -7.70547 -5.25027 -1.14657 0.06782 0.39459 0.41804 1.48813 1.52793 1.58267 2.38833 2.55528 3.29452 3.47186 3.57005 3.61548 4.01108 4.07325 4.10238 4.23642 4.51377 4.53450 4.70759 4.75732 4.79021 4.97378 5.08211 5.14806 5.18719 5.30405 5.39853 5.51754 5.63357 5.73717 5.83305 6.34722 6.54265 7.15923 7.87662 8.29336 9.22395 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.039156 B = 0.005650 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.920330 B = 4954.334217 C = 5113.286910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.201 3.799 3 H 0.059 0.941 4 C -0.090 4.090 5 C -0.037 4.037 6 C -0.113 4.113 7 C -0.059 4.059 8 C -0.063 4.063 9 N 0.036 4.964 10 O -0.191 6.191 11 O -0.173 6.173 12 C -0.059 4.059 13 N -0.601 5.601 14 C 0.156 3.844 15 C -0.251 4.251 16 H 0.090 0.910 17 C -0.052 4.052 18 N -0.932 5.932 19 Si 0.957 3.043 20 H -0.296 1.296 21 H -0.301 1.301 22 H -0.266 1.266 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.129 0.871 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.154 0.846 30 H 0.022 0.978 31 H 0.049 0.951 32 H -0.007 1.007 33 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 1.585 9.833 10.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.094 3.906 3 H 0.076 0.924 4 C -0.094 4.094 5 C -0.056 4.056 6 C -0.131 4.131 7 C -0.078 4.078 8 C -0.146 4.146 9 N 0.550 4.450 10 O -0.401 6.401 11 O -0.388 6.388 12 C -0.078 4.078 13 N -0.324 5.324 14 C 0.011 3.989 15 C -0.381 4.381 16 H 0.108 0.892 17 C -0.247 4.247 18 N -0.580 5.580 19 Si 0.787 3.213 20 H -0.223 1.223 21 H -0.228 1.228 22 H -0.190 1.190 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.147 0.853 27 H 0.188 0.812 28 H 0.186 0.814 29 H 0.171 0.829 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.012 0.988 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.914 1.153 9.186 9.706 hybrid contribution 0.116 -0.175 -0.832 0.858 sum -2.798 0.978 8.354 8.864 Atomic orbital electron populations 1.21819 0.92932 1.02207 1.01832 1.19665 0.95054 0.93715 0.82182 0.92365 1.21097 0.97781 0.94821 0.95702 1.21644 0.92795 0.94483 0.96652 1.21486 0.97901 1.02027 0.91730 1.21218 0.95718 0.90056 1.00818 1.21215 1.10781 0.92859 0.89764 1.43877 0.97977 1.01222 1.01911 1.94511 1.61691 0.96839 1.87077 1.94473 1.50325 1.72351 1.21681 1.20970 0.94680 1.02042 0.90152 1.44289 1.03190 1.62097 1.22801 1.20865 0.83374 0.99781 0.94848 1.19670 0.91980 1.15254 1.11197 0.89228 1.25569 0.98175 0.98226 1.02713 1.70164 1.20680 1.30212 1.36908 0.85398 0.79224 0.76204 0.80427 1.22343 1.22809 1.19041 0.92101 0.92699 0.90883 0.85337 0.81218 0.81404 0.82879 0.95951 0.93341 0.98817 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 7.77 71.98 0.56 -3.45 16 2 C 0.20 6.99 3.10 44.24 0.14 7.13 16 3 H 0.06 1.93 7.94 -2.38 -0.02 1.91 16 4 C -0.09 -2.88 4.54 -19.87 -0.09 -2.97 16 5 C -0.04 -1.17 9.19 22.27 0.20 -0.97 16 6 C -0.11 -2.83 10.05 22.27 0.22 -2.60 16 7 C -0.06 -1.46 9.56 22.27 0.21 -1.25 16 8 C -0.06 -1.83 6.85 36.37 0.25 -1.58 16 9 N 0.04 1.12 4.45 -46.47 -0.21 0.91 16 10 O -0.19 -6.27 18.45 18.88 0.35 -5.93 16 11 O -0.17 -5.38 18.45 18.89 0.35 -5.03 16 12 C -0.06 -1.72 9.18 22.27 0.20 -1.52 16 13 N -0.60 -26.57 2.55 -706.99 -1.81 -28.38 16 14 C 0.16 7.28 8.88 127.77 1.13 8.41 16 15 C -0.25 -12.08 8.85 84.03 0.74 -11.34 16 16 H 0.09 4.08 5.76 -2.91 -0.02 4.07 16 17 C -0.05 -2.65 5.23 84.86 0.44 -2.21 16 18 N -0.93 -50.91 10.44 21.65 0.23 -50.69 16 19 Si 0.96 42.12 29.59 68.60 2.03 44.15 16 20 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H 0.06 1.91 7.46 -2.39 -0.02 1.89 16 24 H 0.05 1.79 7.37 -2.39 -0.02 1.77 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.13 4.76 7.94 -2.91 -0.02 4.74 16 27 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.17 3.35 7.61 -2.91 -0.02 3.33 16 29 H 0.15 4.16 7.54 -2.91 -0.02 4.14 16 30 H 0.02 0.91 7.90 -2.38 -0.02 0.89 16 31 H 0.05 2.53 6.16 -2.38 -0.01 2.51 16 32 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.24 13.23 8.31 -92.71 -0.77 12.46 16 Total: -1.00 -56.73 286.78 6.08 -50.65 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.12 Total: 6.64 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.02 Total: -12.33 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.79 Total: -78.16 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.70 Total: -10.96 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -56.73 6.08 -50.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052687703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.641 kcal (2) G-P(sol) polarization free energy of solvation -56.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds