Wall clock time and date at job start Mon Mar 30 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35907 * 116.99846 * 2 1 4 4 C 1.38754 * 120.05400 * 0.02752 * 3 2 1 5 5 C 1.38122 * 119.94473 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05137 * 359.74301 * 5 4 3 7 7 C 1.38241 * 120.11556 * 0.50764 * 6 5 4 8 8 C 1.50693 * 119.97660 * 179.76511 * 7 6 5 9 9 H 1.08995 * 109.63350 * 238.66574 * 8 7 6 10 10 O 1.43757 * 109.63060 * 118.27155 * 8 7 6 11 11 C 1.44787 * 104.81599 * 215.80791 * 10 8 7 12 12 C 1.54920 * 101.72084 * 36.10772 * 11 10 8 13 13 H 1.09003 * 110.69389 * 83.00152 * 12 11 10 14 14 C 1.50701 * 110.69514 * 206.04270 * 12 11 10 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 12 11 16 16 C 1.37871 * 119.99694 * 180.27695 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 O 1.43366 * 109.63284 * 358.91060 * 8 7 6 23 23 C 1.38167 * 120.05467 * 359.49527 * 7 6 5 24 24 H 1.08993 * 109.47056 * 299.99806 * 1 2 3 25 25 H 1.09001 * 109.47050 * 60.00283 * 1 2 3 26 26 H 1.08998 * 109.46694 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.02894 * 359.97438 * 4 3 2 28 28 H 1.07995 * 119.97485 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.94536 * 180.28129 * 6 5 4 30 30 H 1.08996 * 110.98327 * 277.99792 * 11 10 8 31 31 H 1.09004 * 111.00751 * 154.22574 * 11 10 8 32 32 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 33 33 H 1.07994 * 120.03026 * 180.27451 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0064 7 6 4.0559 2.5173 0.0006 8 6 5.5607 2.5983 0.0011 9 1 5.9551 2.0894 -0.8783 10 8 6.0774 1.9779 1.1906 11 6 7.2296 2.7760 1.5538 12 6 6.7605 4.2006 1.1659 13 1 6.1541 4.6360 1.9602 14 6 7.9413 5.0838 0.8549 15 1 8.9440 4.6880 0.9212 16 6 7.7418 6.3988 0.4917 17 7 6.5209 6.8809 0.4113 18 14 9.2059 7.4957 0.1137 19 1 9.9738 6.9227 -1.0209 20 1 8.7263 8.8535 -0.2494 21 1 10.0811 7.5829 1.3101 22 8 5.9690 3.9725 -0.0176 23 6 3.4312 1.2849 0.0001 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 0.2128 2.3203 0.0006 28 1 1.3339 4.5114 0.0020 29 1 3.7921 4.6382 0.0114 30 1 8.1056 2.4826 0.9754 31 1 7.4301 2.7088 2.6231 32 1 6.3806 7.8061 0.1561 33 1 4.0207 0.3801 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057499852.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:56 Heat of formation + Delta-G solvation = -98.879716 kcal Electronic energy + Delta-G solvation = -18100.605011 eV Core-core repulsion = 15092.055499 eV Total energy + Delta-G solvation = -3008.549512 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00035 -39.07358 -36.95738 -33.96885 -32.70669 -31.34672 -30.06589 -28.61246 -27.21862 -25.04511 -23.96419 -22.20242 -21.18674 -20.57347 -17.74858 -16.91549 -16.22454 -15.80960 -15.65726 -15.42271 -15.17237 -14.85731 -14.32189 -13.70840 -13.43769 -13.08293 -12.62220 -12.47646 -12.24012 -12.04627 -11.77019 -11.47738 -10.98539 -10.93969 -10.91631 -10.66147 -10.58097 -10.29664 -9.45954 -9.11693 -8.72646 -8.59444 -8.21923 -7.87396 -6.15931 -4.31140 1.59707 1.82316 3.26071 3.31154 3.33167 3.37408 4.04641 4.31337 4.61196 4.85341 4.96652 5.10361 5.14961 5.20878 5.38944 5.40823 5.70852 5.74648 5.83408 5.95665 6.06526 6.12028 6.22236 6.33957 6.38383 6.56432 6.68723 6.88804 7.07805 7.13960 7.40513 7.62131 7.73980 8.06445 8.38397 8.79451 9.41415 10.91920 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.042940 B = 0.005279 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.921829 B = 5303.232495 C = 5812.155536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.109 3.891 4 C -0.209 4.209 5 C -0.091 4.091 6 C -0.114 4.114 7 C -0.060 4.060 8 C 0.264 3.736 9 H 0.075 0.925 10 O -0.393 6.393 11 C 0.020 3.980 12 C 0.186 3.814 13 H 0.046 0.954 14 C -0.540 4.540 15 H 0.067 0.933 16 C 0.081 3.919 17 N -0.862 5.862 18 Si 0.898 3.102 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 O -0.361 6.361 23 C -0.130 4.130 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.265 0.735 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 -8.664 -0.667 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.064 3.936 4 C -0.228 4.228 5 C -0.109 4.109 6 C -0.132 4.132 7 C -0.061 4.061 8 C 0.168 3.832 9 H 0.092 0.908 10 O -0.315 6.315 11 C -0.056 4.056 12 C 0.132 3.868 13 H 0.064 0.936 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.126 4.126 17 N -0.497 5.497 18 Si 0.725 3.275 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 O -0.282 6.282 23 C -0.149 4.149 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.165 0.835 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.664 -8.725 -0.752 13.042 hybrid contribution 0.474 0.742 -0.213 0.906 sum -9.190 -7.983 -0.966 12.212 Atomic orbital electron populations 1.22971 0.79043 1.03378 1.01147 1.86043 1.20843 1.27288 1.89357 1.18874 0.92132 0.83879 0.98680 1.21164 0.99422 0.92597 1.09583 1.20958 0.94735 0.96684 0.98572 1.21284 0.93021 0.99944 0.98937 1.20168 0.95882 0.92457 0.97596 1.22437 0.88100 0.84268 0.88439 0.90753 1.89087 1.44863 1.53024 1.44478 1.24574 0.88292 0.92024 1.00721 1.21332 0.90456 0.90335 0.84707 0.93609 1.20948 0.91475 0.94845 1.50471 0.91494 1.25063 0.95942 0.97947 0.93681 1.69994 1.20156 1.15232 1.44355 0.86572 0.82461 0.79416 0.79036 1.19925 1.21049 1.19940 1.89225 1.71012 1.21489 1.46442 1.20144 0.91049 0.98232 1.05429 0.92903 0.92933 0.88665 0.86051 0.85897 0.83531 0.91742 0.89181 0.92529 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.64 10.50 -19.45 -0.20 -4.84 16 3 C 0.11 1.76 6.69 -39.22 -0.26 1.50 16 4 C -0.21 -3.11 9.04 -39.43 -0.36 -3.47 16 5 C -0.09 -1.49 10.04 -39.61 -0.40 -1.88 16 6 C -0.11 -2.23 9.38 -39.56 -0.37 -2.60 16 7 C -0.06 -1.20 5.56 -104.65 -0.58 -1.79 16 8 C 0.26 5.73 4.30 36.00 0.15 5.89 16 9 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 10 O -0.39 -8.52 11.25 -59.04 -0.66 -9.19 16 11 C 0.02 0.43 7.37 38.17 0.28 0.71 16 12 C 0.19 4.76 3.43 -26.87 -0.09 4.67 16 13 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 14 C -0.54 -14.64 8.81 -34.44 -0.30 -14.94 16 15 H 0.07 1.73 7.76 -52.49 -0.41 1.33 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 17 N -0.86 -24.61 13.15 55.43 0.73 -23.88 16 18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 O -0.36 -9.23 9.22 -59.04 -0.54 -9.77 16 23 C -0.13 -2.33 9.58 -39.43 -0.38 -2.71 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.12 1.43 6.30 -52.49 -0.33 1.09 16 28 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.15 3.24 7.01 -52.48 -0.37 2.87 16 30 H 0.06 1.32 8.02 -51.93 -0.42 0.91 16 31 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 285.83 15.07 4.31 4.31 Total: -1.00 -30.26 285.83 -6.80 -37.05 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.99 Total: 1.91 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -1.41 Total: -11.24 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.73 Total: -23.88 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -1.41 Total: -23.80 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.26 -6.80 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057499852.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.825 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds