Wall clock time and date at job start Mon Mar 30 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35907 * 116.99846 * 2 1 4 4 C 1.38754 * 120.05400 * 0.02752 * 3 2 1 5 5 C 1.38122 * 119.94473 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05137 * 359.74301 * 5 4 3 7 7 C 1.38241 * 120.11556 * 0.50764 * 6 5 4 8 8 C 1.50693 * 119.97660 * 179.76511 * 7 6 5 9 9 H 1.08995 * 109.63350 * 238.66574 * 8 7 6 10 10 O 1.43757 * 109.63060 * 118.27155 * 8 7 6 11 11 C 1.44787 * 104.81599 * 215.80791 * 10 8 7 12 12 C 1.54920 * 101.72084 * 36.10772 * 11 10 8 13 13 H 1.09003 * 110.69389 * 83.00152 * 12 11 10 14 14 C 1.50701 * 110.69514 * 206.04270 * 12 11 10 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 12 11 16 16 C 1.37871 * 119.99694 * 180.27695 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 O 1.43366 * 109.63284 * 358.91060 * 8 7 6 23 23 C 1.38167 * 120.05467 * 359.49527 * 7 6 5 24 24 H 1.08993 * 109.47056 * 299.99806 * 1 2 3 25 25 H 1.09001 * 109.47050 * 60.00283 * 1 2 3 26 26 H 1.08998 * 109.46694 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.02894 * 359.97438 * 4 3 2 28 28 H 1.07995 * 119.97485 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.94536 * 180.28129 * 6 5 4 30 30 H 1.08996 * 110.98327 * 277.99792 * 11 10 8 31 31 H 1.09004 * 111.00751 * 154.22574 * 11 10 8 32 32 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 33 33 H 1.07994 * 120.03026 * 180.27451 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0064 7 6 4.0559 2.5173 0.0006 8 6 5.5607 2.5983 0.0011 9 1 5.9551 2.0894 -0.8783 10 8 6.0774 1.9779 1.1906 11 6 7.2296 2.7760 1.5538 12 6 6.7605 4.2006 1.1659 13 1 6.1541 4.6360 1.9602 14 6 7.9413 5.0838 0.8549 15 1 8.9440 4.6880 0.9212 16 6 7.7418 6.3988 0.4917 17 7 6.5209 6.8809 0.4113 18 14 9.2059 7.4957 0.1137 19 1 9.9738 6.9227 -1.0209 20 1 8.7263 8.8535 -0.2494 21 1 10.0811 7.5829 1.3101 22 8 5.9690 3.9725 -0.0176 23 6 3.4312 1.2849 0.0001 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 0.2128 2.3203 0.0006 28 1 1.3339 4.5114 0.0020 29 1 3.7921 4.6382 0.0114 30 1 8.1056 2.4826 0.9754 31 1 7.4301 2.7088 2.6231 32 1 6.3806 7.8061 0.1561 33 1 4.0207 0.3801 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057499852.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:56 Heat of formation + Delta-G solvation = -118.301994 kcal Electronic energy + Delta-G solvation = -18101.447224 eV Core-core repulsion = 15092.055499 eV Total energy + Delta-G solvation = -3009.391725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.42841 -40.60815 -38.24211 -35.84829 -34.68845 -32.85251 -31.42020 -30.35219 -28.16339 -26.92599 -25.59123 -23.60134 -23.03942 -21.96424 -19.05261 -18.91727 -17.85007 -17.24713 -17.02031 -16.72673 -16.62271 -16.46993 -16.13014 -15.27377 -14.84266 -14.46994 -14.30632 -14.16210 -13.71923 -13.50185 -13.25600 -12.94707 -12.75300 -12.53724 -12.38698 -12.30429 -11.98213 -11.85008 -11.33322 -10.89811 -10.74626 -10.26622 -9.87049 -9.17752 -8.22469 -6.45930 0.24359 0.46524 1.43123 1.45929 1.53726 2.32136 2.38251 2.60702 2.91591 3.06852 3.49835 3.85180 3.92774 4.15980 4.21840 4.26865 4.34949 4.42196 4.43879 4.46643 4.55909 4.62911 4.72736 4.76245 4.90139 5.00368 5.26052 5.34567 5.51811 5.64701 5.69431 5.74822 6.02983 6.45337 6.48494 6.76754 7.31262 8.86108 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.042940 B = 0.005279 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.921829 B = 5303.232495 C = 5812.155536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.196 4.196 5 C -0.085 4.085 6 C -0.142 4.142 7 C -0.080 4.080 8 C 0.259 3.741 9 H 0.085 0.915 10 O -0.394 6.394 11 C 0.030 3.970 12 C 0.179 3.821 13 H 0.012 0.988 14 C -0.561 4.561 15 H 0.076 0.924 16 C 0.026 3.974 17 N -0.900 5.900 18 Si 0.970 3.030 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.261 1.261 22 O -0.386 6.386 23 C -0.141 4.141 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.163 0.837 28 H 0.149 0.851 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.266 0.734 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 -9.705 -0.812 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.214 4.214 5 C -0.102 4.102 6 C -0.160 4.160 7 C -0.081 4.081 8 C 0.163 3.837 9 H 0.102 0.898 10 O -0.315 6.315 11 C -0.046 4.046 12 C 0.124 3.876 13 H 0.029 0.971 14 C -0.597 4.597 15 H 0.095 0.905 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.794 3.206 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.186 1.186 22 O -0.307 6.307 23 C -0.160 4.160 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.139 0.861 27 H 0.180 0.820 28 H 0.167 0.833 29 H 0.127 0.873 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.699 -9.792 -0.890 14.531 hybrid contribution 0.631 0.947 -0.167 1.151 sum -10.068 -8.845 -1.057 13.443 Atomic orbital electron populations 1.23387 0.76219 1.05720 1.02419 1.86044 1.23691 1.26187 1.88826 1.18930 0.91687 0.85179 0.97146 1.21531 1.01359 0.91197 1.07320 1.21201 0.93269 0.98638 0.97142 1.21081 0.94800 0.98243 1.01921 1.20016 0.94720 0.93575 0.99766 1.22627 0.89772 0.82576 0.88710 0.89783 1.89071 1.45015 1.52851 1.44597 1.24523 0.88396 0.89342 1.02343 1.21214 0.89793 0.92563 0.84032 0.97058 1.21359 0.92310 0.95659 1.50413 0.90548 1.25991 0.98798 0.99518 0.93370 1.70145 1.22449 1.15577 1.45457 0.85448 0.78817 0.77172 0.79201 1.19391 1.20830 1.18566 1.89158 1.71414 1.23888 1.46283 1.20153 0.92405 0.97340 1.06129 0.91663 0.91457 0.86060 0.81966 0.83347 0.87301 0.90529 0.86837 0.92541 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.65 10.50 -92.50 -0.97 -9.62 16 3 C 0.12 3.52 6.69 22.51 0.15 3.67 16 4 C -0.20 -5.26 9.04 22.37 0.20 -5.06 16 5 C -0.08 -2.66 10.04 22.25 0.22 -2.44 16 6 C -0.14 -5.78 9.38 22.28 0.21 -5.57 16 7 C -0.08 -3.29 5.56 -19.88 -0.11 -3.40 16 8 C 0.26 11.62 4.30 71.23 0.31 11.93 16 9 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 10 O -0.39 -17.28 11.25 -126.22 -1.42 -18.70 16 11 C 0.03 1.28 7.37 72.64 0.54 1.82 16 12 C 0.18 9.51 3.43 30.50 0.10 9.61 16 13 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 14 C -0.56 -30.99 8.81 25.60 0.23 -30.76 16 15 H 0.08 3.96 7.76 -2.91 -0.02 3.93 16 16 C 0.03 1.47 5.45 84.65 0.46 1.93 16 17 N -0.90 -53.27 13.15 21.45 0.28 -52.98 16 18 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 O -0.39 -20.74 9.22 -126.22 -1.16 -21.91 16 23 C -0.14 -5.03 9.58 22.37 0.21 -4.81 16 24 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 25 H 0.07 0.84 7.66 -2.39 -0.02 0.83 16 26 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.16 3.01 6.30 -2.91 -0.02 2.99 16 28 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 29 H 0.11 5.22 7.01 -2.91 -0.02 5.20 16 30 H 0.08 3.11 8.02 -2.39 -0.02 3.09 16 31 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 32 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -67.48 285.83 3.50 -63.98 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.11 Total: 16.14 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 3.63 Total: -21.73 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.28 Total: -52.98 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -3.55 Total: -50.23 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -67.48 3.50 -63.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057499852.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.318 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds