Wall clock time and date at job start Mon Mar 30 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 117.00248 * 2 1 4 4 C 1.38755 * 120.05340 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94689 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05554 * 359.72738 * 5 4 3 7 7 C 1.38253 * 120.10845 * 0.54742 * 6 5 4 8 8 C 1.50700 * 119.97053 * 179.72620 * 7 6 5 9 9 H 1.08997 * 109.62176 * 120.12047 * 8 7 6 10 10 O 1.43364 * 109.62812 * 240.35925 * 8 7 6 11 11 C 1.44203 * 107.28479 * 120.54942 * 10 8 7 12 12 C 1.54914 * 103.07497 * 21.43677 * 11 10 8 13 13 H 1.09002 * 110.97939 * 82.54520 * 12 11 10 14 14 C 1.50706 * 111.00728 * 206.31450 * 12 11 10 15 15 H 1.07993 * 119.99883 * 356.86801 * 14 12 11 16 16 C 1.37879 * 119.99659 * 176.86431 * 14 12 11 17 17 N 1.31514 * 120.00163 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99552 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47103 * 90.00155 * 18 16 14 20 20 H 1.48501 * 109.47073 * 210.00187 * 18 16 14 21 21 H 1.48500 * 109.47460 * 329.99984 * 18 16 14 22 22 O 1.43744 * 109.63082 * 359.72765 * 8 7 6 23 23 C 1.38166 * 120.05133 * 359.45172 * 7 6 5 24 24 H 1.09006 * 109.46878 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47231 * 300.00052 * 1 2 3 26 26 H 1.08998 * 109.47418 * 60.00109 * 1 2 3 27 27 H 1.08011 * 120.02832 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.97482 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.94653 * 180.29620 * 6 5 4 30 30 H 1.08996 * 110.69511 * 263.03554 * 11 10 8 31 31 H 1.09005 * 110.69115 * 139.83477 * 11 10 8 32 32 H 0.97000 * 119.99704 * 179.97438 * 17 16 14 33 33 H 1.08003 * 120.02364 * 180.25261 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6758 0.0046 7 6 4.0560 2.5171 -0.0006 8 6 5.5608 2.5982 -0.0006 9 1 5.9542 2.0996 0.8852 10 8 6.0773 1.9624 -1.1771 11 6 6.8281 2.9547 -1.9059 12 6 7.1637 4.0074 -0.8201 13 1 8.0398 3.7087 -0.2444 14 6 7.3627 5.3702 -1.4321 15 1 7.3144 5.4930 -2.5039 16 6 7.6063 6.4601 -0.6234 17 7 7.6656 6.3104 0.6818 18 14 7.8536 8.1491 -1.3821 19 1 6.5429 8.8382 -1.4940 20 1 8.7620 8.9497 -0.5223 21 1 8.4525 8.0022 -2.7330 22 8 5.9701 3.9761 -0.0011 23 6 3.4310 1.2848 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2127 2.3203 -0.0005 28 1 1.3339 4.5114 -0.0019 29 1 3.7921 4.6381 0.0090 30 1 6.2191 3.3957 -2.6949 31 1 7.7399 2.5220 -2.3178 32 1 7.8373 7.0771 1.2506 33 1 4.0206 0.3799 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057499854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:58 Heat of formation + Delta-G solvation = -118.751248 kcal Electronic energy + Delta-G solvation = -18107.688454 eV Core-core repulsion = 15098.277247 eV Total energy + Delta-G solvation = -3009.411206 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43000 -40.61357 -38.24935 -35.85669 -34.70330 -32.85926 -31.43875 -30.37672 -28.16808 -26.99317 -25.55210 -23.78882 -22.83310 -21.95270 -19.25213 -18.61864 -18.06115 -17.37121 -16.96775 -16.75977 -16.60639 -16.42729 -15.93490 -15.40624 -14.77037 -14.50295 -14.35319 -14.24616 -13.89581 -13.44227 -13.22465 -12.97404 -12.79513 -12.56827 -12.34534 -12.25637 -11.94947 -11.86810 -11.32229 -10.89285 -10.67659 -10.37151 -9.90861 -9.18133 -8.25332 -6.48299 0.24905 0.46279 1.42639 1.43743 1.55007 2.31063 2.36893 2.62737 2.88072 3.05178 3.43863 3.86195 3.95783 4.15303 4.21891 4.26180 4.34854 4.42250 4.43919 4.46665 4.55343 4.60338 4.72698 4.76101 4.95786 4.99587 5.26230 5.30850 5.50118 5.62388 5.67293 5.74505 5.99444 6.43700 6.46362 6.70866 7.28589 8.83869 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.036788 B = 0.005440 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.935395 B = 5145.558638 C = 5581.271882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.196 4.196 5 C -0.083 4.083 6 C -0.143 4.143 7 C -0.078 4.078 8 C 0.258 3.742 9 H 0.078 0.922 10 O -0.398 6.398 11 C 0.035 3.965 12 C 0.174 3.826 13 H 0.019 0.981 14 C -0.554 4.554 15 H 0.076 0.924 16 C 0.027 3.973 17 N -0.901 5.901 18 Si 0.971 3.029 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.258 1.258 22 O -0.378 6.378 23 C -0.142 4.142 24 H 0.121 0.879 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.163 0.837 28 H 0.152 0.848 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.267 0.733 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.335 -8.069 -1.626 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.071 3.929 4 C -0.215 4.215 5 C -0.101 4.101 6 C -0.161 4.161 7 C -0.078 4.078 8 C 0.162 3.838 9 H 0.095 0.905 10 O -0.320 6.320 11 C -0.041 4.041 12 C 0.119 3.881 13 H 0.037 0.963 14 C -0.591 4.591 15 H 0.094 0.906 16 C -0.176 4.176 17 N -0.537 5.537 18 Si 0.794 3.206 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.182 1.182 22 O -0.299 6.299 23 C -0.161 4.161 24 H 0.139 0.861 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.181 0.819 28 H 0.170 0.830 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.360 -8.230 -1.404 15.754 hybrid contribution 0.427 1.006 0.012 1.093 sum -12.933 -7.224 -1.391 14.879 Atomic orbital electron populations 1.23388 0.76187 1.05712 1.02447 1.86042 1.23719 1.26259 1.88809 1.18915 0.91611 0.85231 0.97094 1.21541 1.01375 0.91217 1.07330 1.21223 0.93230 0.98668 0.96962 1.21064 0.94774 0.98128 1.02150 1.19949 0.94425 0.93700 0.99752 1.22566 0.89967 0.82660 0.88642 0.90471 1.88725 1.70676 1.35981 1.36613 1.24279 0.95810 0.88612 0.95428 1.21462 0.84383 0.95824 0.86434 0.96348 1.21233 1.51452 0.92552 0.93837 0.90563 1.25989 0.92862 1.03697 0.95076 1.70156 1.46606 1.32250 1.04729 0.85381 0.78238 0.78123 0.78857 1.19996 1.20466 1.18183 1.89495 1.45401 1.22394 1.72594 1.20108 0.92433 0.97314 1.06230 0.86122 0.91452 0.91577 0.81938 0.83037 0.87106 0.91694 0.87353 0.92454 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.59 10.50 -92.43 -0.97 -9.56 16 3 C 0.12 3.49 6.69 22.50 0.15 3.64 16 4 C -0.20 -5.08 9.04 22.36 0.20 -4.88 16 5 C -0.08 -2.47 10.04 22.25 0.22 -2.25 16 6 C -0.14 -5.57 9.38 22.29 0.21 -5.36 16 7 C -0.08 -3.14 5.56 -19.88 -0.11 -3.25 16 8 C 0.26 11.69 4.30 71.24 0.31 12.00 16 9 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 10 O -0.40 -17.65 11.10 -126.22 -1.40 -19.05 16 11 C 0.03 1.53 7.51 72.64 0.55 2.07 16 12 C 0.17 9.21 3.30 30.50 0.10 9.31 16 13 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 14 C -0.55 -30.62 8.84 25.60 0.23 -30.40 16 15 H 0.08 3.99 7.78 -2.91 -0.02 3.97 16 16 C 0.03 1.49 5.44 84.66 0.46 1.95 16 17 N -0.90 -53.27 13.09 21.45 0.28 -52.99 16 18 Si 0.97 42.65 29.54 68.60 2.03 44.67 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 O -0.38 -20.31 9.29 -126.22 -1.17 -21.48 16 23 C -0.14 -5.02 9.57 22.36 0.21 -4.81 16 24 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 26 H 0.07 0.82 7.66 -2.39 -0.02 0.81 16 27 H 0.16 2.86 6.30 -2.90 -0.02 2.84 16 28 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 29 H 0.11 4.96 7.00 -2.91 -0.02 4.94 16 30 H 0.06 2.83 8.02 -2.39 -0.02 2.81 16 31 H 0.11 4.13 8.14 -2.38 -0.02 4.11 16 32 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -67.15 285.73 3.51 -63.64 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.11 Total: 15.39 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 3.64 Total: -20.63 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.28 Total: -52.99 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -3.54 Total: -50.09 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -67.15 3.51 -63.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057499854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.112 kcal (2) G-P(sol) polarization free energy of solvation -67.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds