Wall clock time and date at job start Mon Mar 30 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00302 * 2 1 4 4 C 1.38726 * 120.05788 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94477 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05411 * 0.28574 * 5 4 3 7 7 C 1.50696 * 119.94521 * 179.72456 * 6 5 4 8 8 H 1.09000 * 110.09455 * 60.13342 * 7 6 5 9 9 O 1.44386 * 110.11046 * 298.54203 * 7 6 5 10 10 C 1.44840 * 103.23339 * 201.59976 * 9 7 6 11 11 C 1.54448 * 102.89435 * 36.61078 * 10 9 7 12 12 H 1.09003 * 110.31976 * 97.10835 * 11 10 9 13 13 C 1.50704 * 110.31992 * 219.20149 * 11 10 9 14 14 H 1.08001 * 119.99630 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00048 * 180.02562 * 13 11 10 16 16 N 1.31509 * 120.00364 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99830 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47222 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47083 * 120.00023 * 17 15 13 20 20 H 1.48508 * 109.47101 * 239.99521 * 17 15 13 21 21 O 1.43775 * 110.11561 * 181.79975 * 7 6 5 22 22 C 1.38264 * 120.10762 * 359.44038 * 6 5 4 23 23 C 1.38144 * 120.05928 * 0.55731 * 22 6 5 24 24 H 1.09002 * 109.47042 * 299.99130 * 1 2 3 25 25 H 1.08996 * 109.47358 * 59.99767 * 1 2 3 26 26 H 1.09009 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.02799 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.97030 * 179.97438 * 5 4 3 29 29 H 1.09002 * 110.72655 * 154.95912 * 10 9 7 30 30 H 1.08999 * 110.72545 * 278.08221 * 10 9 7 31 31 H 0.96999 * 120.00239 * 180.02562 * 16 15 13 32 32 H 1.08007 * 119.96975 * 180.26053 * 22 6 5 33 33 H 1.08007 * 120.02904 * 179.75033 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0049 7 6 3.9861 5.0185 0.0106 8 1 4.6103 5.1245 -0.8767 9 8 4.7887 5.1617 1.2023 10 6 4.9337 6.5968 1.3339 11 6 3.5606 7.1263 0.8652 12 1 2.9175 7.3223 1.7233 13 6 3.7347 8.3792 0.0460 14 1 4.7239 8.7738 -0.1336 15 6 2.6313 9.0216 -0.4744 16 7 1.4268 8.5408 -0.2562 17 14 2.8473 10.5741 -1.4905 18 1 4.2918 10.9044 -1.5888 19 1 2.2952 10.3557 -2.8515 20 1 2.1265 11.6969 -0.8383 21 8 3.0082 6.0714 0.0574 22 6 1.9211 3.6047 -0.0013 23 6 1.2915 2.3750 -0.0009 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 4.0208 0.3799 0.0005 28 1 5.1346 2.5749 0.0008 29 1 5.1195 6.8721 2.3720 30 1 5.7324 6.9644 0.6897 31 1 0.6506 8.9926 -0.6226 32 1 1.3342 4.5114 -0.0018 33 1 0.2129 2.3201 -0.0017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057499876.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:04 Heat of formation + Delta-G solvation = -99.887115 kcal Electronic energy + Delta-G solvation = -18024.444700 eV Core-core repulsion = 15015.851504 eV Total energy + Delta-G solvation = -3008.593196 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00620 -39.05878 -37.04085 -33.91007 -32.62858 -30.92380 -30.68551 -28.65225 -27.24837 -24.92589 -23.82586 -22.35051 -21.00783 -20.67033 -17.99735 -16.82722 -16.48116 -15.94511 -15.68088 -15.39264 -14.92859 -14.54424 -14.33670 -13.70680 -13.46215 -13.08015 -12.90928 -12.46171 -12.27324 -11.96165 -11.92288 -11.27951 -11.16542 -10.97319 -10.94593 -10.60272 -10.45348 -10.30392 -9.48724 -9.22671 -8.70182 -8.67039 -8.20820 -7.86924 -6.12960 -4.28854 1.61664 1.70066 3.23550 3.31883 3.34768 3.35116 3.99549 4.32799 4.67327 4.80533 4.97784 5.11536 5.12637 5.22775 5.34620 5.40999 5.67855 5.71862 5.82939 5.87414 6.02829 6.11095 6.17611 6.32691 6.39281 6.54983 6.69455 6.86713 6.99966 7.05221 7.42592 7.54468 7.74499 8.08605 8.35932 8.82364 9.44399 10.94172 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032747 B = 0.005390 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.847650 B = 5193.309912 C = 5799.409317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.120 3.880 4 C -0.161 4.161 5 C -0.061 4.061 6 C -0.119 4.119 7 C 0.268 3.732 8 H 0.066 0.934 9 O -0.394 6.394 10 C 0.021 3.979 11 C 0.182 3.818 12 H 0.053 0.947 13 C -0.550 4.550 14 H 0.065 0.935 15 C 0.081 3.919 16 N -0.862 5.862 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 O -0.362 6.362 22 C -0.041 4.041 23 C -0.214 4.214 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.263 0.737 32 H 0.144 0.856 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 -12.331 0.342 12.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.075 3.925 4 C -0.180 4.180 5 C -0.079 4.079 6 C -0.120 4.120 7 C 0.172 3.828 8 H 0.083 0.917 9 O -0.315 6.315 10 C -0.056 4.056 11 C 0.127 3.873 12 H 0.071 0.929 13 C -0.587 4.587 14 H 0.083 0.917 15 C -0.125 4.125 16 N -0.498 5.498 17 Si 0.722 3.278 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.208 1.208 21 O -0.283 6.283 22 C -0.059 4.059 23 C -0.233 4.233 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.075 -12.670 0.357 12.675 hybrid contribution -0.117 1.149 -0.629 1.315 sum -0.193 -11.521 -0.272 11.526 Atomic orbital electron populations 1.23010 0.78737 1.03441 1.01527 1.86016 1.21156 1.27358 1.89089 1.19046 0.92385 0.83912 0.97132 1.20262 0.91205 0.98211 1.08329 1.20725 0.99878 0.90730 0.96605 1.19855 0.94084 0.94067 1.03975 1.22581 0.85002 0.87275 0.87951 0.91661 1.89292 1.71981 1.24124 1.46148 1.24428 1.00416 0.79146 1.01567 1.21100 0.88180 0.86232 0.91758 0.92892 1.21294 0.93460 1.07979 1.35993 0.91726 1.25051 0.95100 0.97126 0.95271 1.70026 0.97905 1.38852 1.42990 0.86515 0.78474 0.82744 0.80100 1.19536 1.20737 1.20757 1.89136 1.39643 1.26914 1.72642 1.21049 0.94269 0.97625 0.92923 1.21242 0.99863 0.92230 1.09934 0.92665 0.92678 0.88610 0.85502 0.85343 0.89606 0.91836 0.92749 0.83818 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.42 10.50 -19.42 -0.20 -4.62 16 3 C 0.12 1.85 6.69 -39.22 -0.26 1.59 16 4 C -0.16 -2.45 9.99 -39.43 -0.39 -2.84 16 5 C -0.06 -1.01 9.65 -39.60 -0.38 -1.39 16 6 C -0.12 -2.30 5.58 -104.60 -0.58 -2.89 16 7 C 0.27 5.81 4.19 36.00 0.15 5.96 16 8 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 9 O -0.39 -8.50 11.43 -59.28 -0.68 -9.17 16 10 C 0.02 0.44 7.34 37.92 0.28 0.72 16 11 C 0.18 4.67 3.52 -27.12 -0.10 4.57 16 12 H 0.05 1.45 8.14 -51.93 -0.42 1.02 16 13 C -0.55 -14.96 8.78 -34.44 -0.30 -15.26 16 14 H 0.06 1.69 7.55 -52.49 -0.40 1.30 16 15 C 0.08 2.23 5.43 -17.82 -0.10 2.14 16 16 N -0.86 -24.91 13.05 55.43 0.72 -24.19 16 17 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 O -0.36 -9.32 9.16 -59.28 -0.54 -9.87 16 22 C -0.04 -0.77 9.39 -39.61 -0.37 -1.14 16 23 C -0.21 -3.42 9.04 -39.43 -0.36 -3.77 16 24 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 27 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.06 1.30 7.69 -51.93 -0.40 0.90 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.14 2.98 7.03 -52.48 -0.37 2.61 16 33 H 0.13 1.70 6.30 -52.48 -0.33 1.36 16 LS Contribution 285.28 15.07 4.30 4.30 Total: -1.00 -30.69 285.28 -6.81 -37.50 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.96 Total: 1.31 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.42 Total: -11.04 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.72 Total: -24.19 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -1.42 Total: -23.66 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.69 -6.81 -37.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057499876.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.389 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds