Wall clock time and date at job start Mon Mar 30 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00302 * 2 1 4 4 C 1.38726 * 120.05788 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94477 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05411 * 0.28574 * 5 4 3 7 7 C 1.50696 * 119.94521 * 179.72456 * 6 5 4 8 8 H 1.09000 * 110.09455 * 60.13342 * 7 6 5 9 9 O 1.44386 * 110.11046 * 298.54203 * 7 6 5 10 10 C 1.44840 * 103.23339 * 201.59976 * 9 7 6 11 11 C 1.54448 * 102.89435 * 36.61078 * 10 9 7 12 12 H 1.09003 * 110.31976 * 97.10835 * 11 10 9 13 13 C 1.50704 * 110.31992 * 219.20149 * 11 10 9 14 14 H 1.08001 * 119.99630 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00048 * 180.02562 * 13 11 10 16 16 N 1.31509 * 120.00364 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99830 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47222 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47083 * 120.00023 * 17 15 13 20 20 H 1.48508 * 109.47101 * 239.99521 * 17 15 13 21 21 O 1.43775 * 110.11561 * 181.79975 * 7 6 5 22 22 C 1.38264 * 120.10762 * 359.44038 * 6 5 4 23 23 C 1.38144 * 120.05928 * 0.55731 * 22 6 5 24 24 H 1.09002 * 109.47042 * 299.99130 * 1 2 3 25 25 H 1.08996 * 109.47358 * 59.99767 * 1 2 3 26 26 H 1.09009 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.02799 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.97030 * 179.97438 * 5 4 3 29 29 H 1.09002 * 110.72655 * 154.95912 * 10 9 7 30 30 H 1.08999 * 110.72545 * 278.08221 * 10 9 7 31 31 H 0.96999 * 120.00239 * 180.02562 * 16 15 13 32 32 H 1.08007 * 119.96975 * 180.26053 * 22 6 5 33 33 H 1.08007 * 120.02904 * 179.75033 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0049 7 6 3.9861 5.0185 0.0106 8 1 4.6103 5.1245 -0.8767 9 8 4.7887 5.1617 1.2023 10 6 4.9337 6.5968 1.3339 11 6 3.5606 7.1263 0.8652 12 1 2.9175 7.3223 1.7233 13 6 3.7347 8.3792 0.0460 14 1 4.7239 8.7738 -0.1336 15 6 2.6313 9.0216 -0.4744 16 7 1.4268 8.5408 -0.2562 17 14 2.8473 10.5741 -1.4905 18 1 4.2918 10.9044 -1.5888 19 1 2.2952 10.3557 -2.8515 20 1 2.1265 11.6969 -0.8383 21 8 3.0082 6.0714 0.0574 22 6 1.9211 3.6047 -0.0013 23 6 1.2915 2.3750 -0.0009 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 4.0208 0.3799 0.0005 28 1 5.1346 2.5749 0.0008 29 1 5.1195 6.8721 2.3720 30 1 5.7324 6.9644 0.6897 31 1 0.6506 8.9926 -0.6226 32 1 1.3342 4.5114 -0.0018 33 1 0.2129 2.3201 -0.0017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057499876.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:03 Heat of formation + Delta-G solvation = -119.524727 kcal Electronic energy + Delta-G solvation = -18025.296251 eV Core-core repulsion = 15015.851504 eV Total energy + Delta-G solvation = -3009.444747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36329 -40.61907 -38.29322 -35.78744 -34.62387 -32.41195 -32.01217 -30.32709 -28.26126 -26.82515 -25.40611 -23.71078 -22.81003 -22.07938 -19.15958 -18.87633 -18.03398 -17.53678 -16.97945 -16.64370 -16.54383 -16.24565 -15.87966 -15.26773 -14.74280 -14.57071 -14.45774 -14.07973 -13.84146 -13.54040 -13.07053 -12.88938 -12.80769 -12.70163 -12.50140 -12.20548 -12.00291 -11.74643 -11.35088 -10.98643 -10.74566 -10.16521 -9.97987 -9.16124 -8.21263 -6.44982 0.32030 0.37897 1.40600 1.41895 1.54425 2.34430 2.37599 2.63082 2.94459 3.07280 3.41261 3.86905 3.92454 4.10278 4.22965 4.27301 4.35965 4.39115 4.39847 4.47642 4.55791 4.66893 4.72538 4.74612 5.03237 5.08163 5.24110 5.31973 5.43825 5.63630 5.68180 5.72624 6.03717 6.40424 6.46703 6.78189 7.32902 8.86968 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.032747 B = 0.005390 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.847650 B = 5193.309912 C = 5799.409317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.126 3.874 4 C -0.156 4.156 5 C -0.057 4.057 6 C -0.146 4.146 7 C 0.265 3.735 8 H 0.069 0.931 9 O -0.393 6.393 10 C 0.030 3.970 11 C 0.172 3.828 12 H 0.021 0.979 13 C -0.566 4.566 14 H 0.073 0.927 15 C 0.026 3.974 16 N -0.902 5.902 17 Si 0.967 3.033 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.275 1.275 21 O -0.389 6.389 22 C -0.062 4.062 23 C -0.212 4.212 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.157 0.843 28 H 0.148 0.852 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.264 0.736 32 H 0.112 0.888 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -13.680 -0.077 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.080 3.920 4 C -0.175 4.175 5 C -0.075 4.075 6 C -0.147 4.147 7 C 0.169 3.831 8 H 0.086 0.914 9 O -0.314 6.314 10 C -0.046 4.046 11 C 0.117 3.883 12 H 0.039 0.961 13 C -0.603 4.603 14 H 0.091 0.909 15 C -0.177 4.177 16 N -0.539 5.539 17 Si 0.791 3.209 18 H -0.183 1.183 19 H -0.207 1.207 20 H -0.201 1.201 21 O -0.311 6.311 22 C -0.080 4.080 23 C -0.230 4.230 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.144 0.856 27 H 0.175 0.825 28 H 0.166 0.834 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.725 -14.032 -0.054 14.051 hybrid contribution -0.428 1.417 -0.472 1.553 sum 0.298 -12.615 -0.525 12.629 Atomic orbital electron populations 1.23361 0.76573 1.05738 1.02097 1.86029 1.23355 1.26078 1.88542 1.19171 0.92762 0.84304 0.95746 1.20598 0.91490 0.98685 1.06690 1.20884 1.00695 0.90120 0.95805 1.19795 0.94380 0.93757 1.06768 1.22745 0.84633 0.87703 0.87982 0.91353 1.89278 1.71876 1.24049 1.46231 1.24369 0.98135 0.78887 1.03179 1.21034 0.89882 0.86617 0.90809 0.96101 1.21677 0.93899 1.08799 1.35962 0.90940 1.25965 0.94700 1.00531 0.96455 1.70169 0.98799 1.40600 1.44362 0.85397 0.78960 0.78544 0.78035 1.18256 1.20732 1.20054 1.89084 1.41296 1.27980 1.72692 1.20859 0.94259 0.97720 0.95182 1.21359 1.01054 0.91377 1.09233 0.92147 0.92050 0.85572 0.82521 0.83445 0.87173 0.90599 0.92690 0.87022 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.97 10.50 -92.42 -0.97 -8.94 16 3 C 0.13 3.61 6.69 22.50 0.15 3.76 16 4 C -0.16 -4.33 9.99 22.37 0.22 -4.11 16 5 C -0.06 -1.79 9.65 22.26 0.21 -1.57 16 6 C -0.15 -5.71 5.58 -19.85 -0.11 -5.82 16 7 C 0.26 11.71 4.19 71.23 0.30 12.01 16 8 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 9 O -0.39 -16.87 11.43 -125.98 -1.44 -18.31 16 10 C 0.03 1.29 7.34 72.47 0.53 1.82 16 11 C 0.17 9.09 3.52 30.34 0.11 9.20 16 12 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 13 C -0.57 -31.27 8.78 25.60 0.22 -31.05 16 14 H 0.07 3.78 7.55 -2.91 -0.02 3.76 16 15 C 0.03 1.46 5.43 84.66 0.46 1.92 16 16 N -0.90 -53.88 13.05 21.45 0.28 -53.60 16 17 Si 0.97 43.04 29.54 68.60 2.03 45.06 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 21 O -0.39 -20.90 9.16 -125.98 -1.15 -22.05 16 22 C -0.06 -2.41 9.39 22.25 0.21 -2.20 16 23 C -0.21 -6.62 9.04 22.36 0.20 -6.42 16 24 H 0.06 0.95 7.66 -2.39 -0.02 0.94 16 25 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 26 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 28 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 29 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 30 H 0.08 3.02 7.69 -2.39 -0.02 3.00 16 31 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.11 5.01 7.03 -2.91 -0.02 4.98 16 33 H 0.15 3.80 6.30 -2.91 -0.02 3.79 16 Total: -1.00 -67.27 285.28 3.48 -63.79 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 1.11 Total: 15.13 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 3.62 Total: -21.08 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.28 Total: -53.60 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -3.56 Total: -49.31 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.27 3.48 -63.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057499876.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.730 kcal (2) G-P(sol) polarization free energy of solvation -67.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds