Wall clock time and date at job start Mon Mar 30 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00035 * 2 1 4 4 C 1.38733 * 120.05440 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94322 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.05505 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.94414 * 180.02562 * 6 5 4 8 8 H 1.09001 * 110.13973 * 301.62906 * 7 6 5 9 9 O 1.43774 * 110.11220 * 63.25661 * 7 6 5 10 10 C 1.43892 * 107.10770 * 144.26671 * 9 7 6 11 11 C 1.54454 * 105.07918 * 358.28745 * 10 9 7 12 12 H 1.08994 * 110.88141 * 96.62686 * 11 10 9 13 13 C 1.50698 * 110.72833 * 219.85557 * 11 10 9 14 14 H 1.08001 * 120.00531 * 354.93359 * 13 11 10 15 15 C 1.37880 * 120.00164 * 174.93238 * 13 11 10 16 16 N 1.31516 * 119.99682 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00357 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46782 * 60.00048 * 17 15 13 19 19 H 1.48497 * 109.47174 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47164 * 300.00163 * 17 15 13 21 21 O 1.44391 * 110.11390 * 179.97438 * 7 6 5 22 22 C 1.38268 * 120.11378 * 0.29209 * 6 5 4 23 23 C 1.38143 * 120.05233 * 359.45507 * 22 6 5 24 24 H 1.09001 * 109.47139 * 59.99948 * 1 2 3 25 25 H 1.08999 * 109.47207 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46984 * 300.00571 * 1 2 3 27 27 H 1.08001 * 120.02855 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.97089 * 179.97438 * 5 4 3 29 29 H 1.09006 * 110.31512 * 239.39361 * 10 9 7 30 30 H 1.08990 * 110.32375 * 117.19115 * 10 9 7 31 31 H 0.96999 * 119.99997 * 179.97438 * 16 15 13 32 32 H 1.07997 * 119.97264 * 179.70097 * 22 6 5 33 33 H 1.08001 * 120.03020 * 180.25337 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6757 0.0005 7 6 3.9862 5.0185 0.0005 8 1 4.6351 5.1091 0.8716 9 8 4.7515 5.1834 -1.2054 10 6 4.6597 6.5701 -1.5786 11 6 3.7383 7.2116 -0.5179 12 1 4.3239 7.6851 0.2700 13 6 2.8027 8.2061 -1.1555 14 1 2.8982 8.4415 -2.2052 15 6 1.8245 8.8157 -0.3987 16 7 1.7078 8.5288 0.8795 17 14 0.6652 10.0491 -1.1888 18 1 -0.0886 9.3883 -2.2844 19 1 -0.2876 10.5564 -0.1690 20 1 1.4498 11.1824 -1.7411 21 8 3.0036 6.0765 0.0005 22 6 1.9212 3.6047 0.0066 23 6 1.2916 2.3751 0.0008 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.0209 0.3799 -0.0005 28 1 5.1346 2.5750 0.0000 29 1 4.2189 6.6665 -2.5709 30 1 5.6453 7.0346 -1.5546 31 1 1.0199 8.9579 1.4120 32 1 1.3343 4.5113 0.0119 33 1 0.2130 2.3201 0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057499879.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:05 Heat of formation + Delta-G solvation = -119.565304 kcal Electronic energy + Delta-G solvation = -18056.313013 eV Core-core repulsion = 15046.866506 eV Total energy + Delta-G solvation = -3009.446506 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36604 -40.62270 -38.29748 -35.79624 -34.66558 -32.43035 -32.02505 -30.36047 -28.26530 -26.86934 -25.40397 -23.69274 -22.87755 -21.99330 -19.27228 -18.95147 -17.84634 -17.30810 -17.22340 -16.63889 -16.46493 -16.19164 -15.96202 -15.43183 -14.88331 -14.57559 -14.42054 -14.20926 -13.83375 -13.42545 -13.15412 -13.02863 -12.78457 -12.70060 -12.42566 -12.15459 -11.93618 -11.75615 -11.36059 -10.91386 -10.65133 -10.40517 -9.98683 -9.17111 -8.24804 -6.47393 0.31844 0.37530 1.41096 1.43827 1.51733 2.34115 2.36284 2.62076 2.91959 3.04979 3.41583 3.86326 3.92495 4.10077 4.18562 4.24943 4.34420 4.39394 4.42301 4.47085 4.56145 4.64602 4.72722 4.74265 5.06792 5.12436 5.21792 5.26292 5.41825 5.61535 5.66944 5.72174 5.99996 6.38736 6.40793 6.70393 7.28855 8.83851 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.005841 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.649530 B = 4792.561598 C = 5550.175403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.126 3.874 4 C -0.156 4.156 5 C -0.057 4.057 6 C -0.144 4.144 7 C 0.257 3.743 8 H 0.071 0.929 9 O -0.400 6.400 10 C 0.034 3.966 11 C 0.170 3.830 12 H 0.019 0.981 13 C -0.557 4.557 14 H 0.075 0.925 15 C 0.027 3.973 16 N -0.900 5.900 17 Si 0.969 3.031 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.260 1.260 21 O -0.376 6.376 22 C -0.062 4.062 23 C -0.212 4.212 24 H 0.060 0.940 25 H 0.126 0.874 26 H 0.061 0.939 27 H 0.158 0.842 28 H 0.148 0.852 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.266 0.734 32 H 0.110 0.890 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -13.563 -1.291 13.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.080 3.920 4 C -0.174 4.174 5 C -0.075 4.075 6 C -0.145 4.145 7 C 0.162 3.838 8 H 0.088 0.912 9 O -0.322 6.322 10 C -0.042 4.042 11 C 0.115 3.885 12 H 0.036 0.964 13 C -0.594 4.594 14 H 0.093 0.907 15 C -0.177 4.177 16 N -0.536 5.536 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.184 1.184 21 O -0.297 6.297 22 C -0.080 4.080 23 C -0.230 4.230 24 H 0.078 0.922 25 H 0.144 0.856 26 H 0.079 0.921 27 H 0.175 0.825 28 H 0.166 0.834 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.384 -13.896 -1.156 13.949 hybrid contribution -0.766 1.278 0.005 1.489 sum -1.149 -12.618 -1.151 12.723 Atomic orbital electron populations 1.23360 0.76579 1.05740 1.02089 1.86031 1.23351 1.26065 1.88542 1.19167 0.92766 0.84284 0.95736 1.20602 0.91479 0.98688 1.06669 1.20880 1.00713 0.90094 0.95765 1.19743 0.94310 0.93718 1.06732 1.22808 0.85253 0.88201 0.87570 0.91234 1.88726 1.71895 1.27714 1.43891 1.24060 1.00299 0.80255 0.99586 1.21297 0.90793 0.85731 0.90682 0.96351 1.21270 1.18220 1.23093 0.96828 0.90738 1.25973 0.98656 0.97906 0.95120 1.70154 1.33513 1.42446 1.07495 0.85463 0.78312 0.78864 0.78131 1.19564 1.20688 1.18449 1.89697 1.34376 1.20253 1.85351 1.20845 0.94282 0.97669 0.95228 1.21352 1.01045 0.91385 1.09258 0.92159 0.85557 0.92060 0.82477 0.83389 0.90835 0.89155 0.92536 0.87172 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.01 10.50 -92.43 -0.97 -8.98 16 3 C 0.13 3.64 6.69 22.51 0.15 3.79 16 4 C -0.16 -4.34 9.99 22.37 0.22 -4.12 16 5 C -0.06 -1.78 9.67 22.25 0.22 -1.57 16 6 C -0.14 -5.67 5.57 -19.85 -0.11 -5.78 16 7 C 0.26 11.41 4.18 71.24 0.30 11.70 16 8 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 9 O -0.40 -17.46 11.19 -125.98 -1.41 -18.87 16 10 C 0.03 1.50 7.65 72.48 0.55 2.05 16 11 C 0.17 8.98 3.25 30.34 0.10 9.07 16 12 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 13 C -0.56 -30.99 8.80 25.60 0.23 -30.76 16 14 H 0.07 3.93 7.59 -2.91 -0.02 3.91 16 15 C 0.03 1.48 5.42 84.66 0.46 1.94 16 16 N -0.90 -53.26 12.95 21.45 0.28 -52.99 16 17 Si 0.97 42.92 29.54 68.60 2.03 44.94 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 21 O -0.38 -20.23 9.29 -125.98 -1.17 -21.40 16 22 C -0.06 -2.43 9.39 22.25 0.21 -2.22 16 23 C -0.21 -6.68 9.04 22.36 0.20 -6.48 16 24 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 25 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 27 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 28 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.07 3.18 7.69 -2.38 -0.02 3.16 16 30 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.27 14.82 8.31 -92.71 -0.77 14.04 16 32 H 0.11 4.98 7.02 -2.91 -0.02 4.96 16 33 H 0.15 3.83 6.30 -2.91 -0.02 3.81 16 Total: -1.00 -66.72 285.16 3.50 -63.22 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.11 Total: 15.06 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 3.64 Total: -20.98 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.28 Total: -52.99 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -3.55 Total: -49.26 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -66.72 3.50 -63.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057499879.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.344 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds