Wall clock time and date at job start Mon Mar 30 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35909 * 117.00105 * 2 1 4 4 C 1.38852 * 119.98352 * 359.97438 * 3 2 1 5 5 C 1.38253 * 120.25094 * 180.02562 * 4 3 2 6 6 C 1.37988 * 120.21070 * 359.95610 * 5 4 3 7 7 C 1.50706 * 120.01941 * 180.02562 * 6 5 4 8 8 C 1.39617 * 119.96417 * 0.02562 * 6 5 4 9 9 C 1.47733 * 120.12564 * 180.02562 * 8 6 5 10 10 O 1.21468 * 120.00425 * 90.00221 * 9 8 6 11 11 O 1.34711 * 120.00241 * 270.00230 * 9 8 6 12 12 C 1.38448 * 119.97791 * 180.25609 * 3 2 1 13 13 C 1.50699 * 120.11150 * 0.02562 * 12 3 2 14 14 C 1.50706 * 109.46758 * 270.25371 * 13 12 3 15 15 H 1.07998 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99621 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99976 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99754 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47195 * 60.00464 * 18 16 14 20 20 H 1.48498 * 109.47103 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47402 * 300.00210 * 18 16 14 22 22 H 1.09000 * 109.47103 * 300.00265 * 1 2 3 23 23 H 1.08999 * 109.46976 * 60.00072 * 1 2 3 24 24 H 1.08995 * 109.47641 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.87520 * 0.02562 * 4 3 2 26 26 H 1.07997 * 119.89579 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.46844 * 269.97372 * 7 6 5 28 28 H 1.09000 * 109.47306 * 29.97987 * 7 6 5 29 29 H 1.09002 * 109.47138 * 149.98217 * 7 6 5 30 30 H 0.96700 * 117.00324 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.47016 * 30.24620 * 13 12 3 32 32 H 1.08998 * 109.47081 * 150.25544 * 13 12 3 33 33 H 0.97003 * 120.00000 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3753 -0.0005 5 6 1.9114 3.6100 -0.0011 6 6 3.2887 3.6937 -0.0002 7 6 3.9621 5.0419 -0.0002 8 6 4.0581 2.5287 0.0008 9 6 5.5330 2.6141 0.0023 10 8 6.1383 2.6493 1.0548 11 8 6.2067 2.6530 -1.1636 12 6 3.4286 1.2829 -0.0054 13 6 4.2513 0.0203 -0.0118 14 6 4.5259 -0.4075 1.4070 15 1 4.1427 0.1763 2.2308 16 6 5.2656 -1.5448 1.6531 17 7 5.7318 -2.2559 0.6499 18 14 5.6066 -2.0746 3.4116 19 1 4.3208 -2.3245 4.1115 20 1 6.4161 -3.3195 3.4053 21 1 6.3532 -1.0015 4.1160 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.2110 2.3161 -0.0005 26 1 1.3173 4.5119 -0.0019 27 1 4.1256 5.3663 -1.0279 28 1 3.3278 5.7649 0.5127 29 1 4.9202 4.9695 0.5146 30 1 7.1707 2.7085 -1.1120 31 1 3.7038 -0.7675 -0.5292 32 1 5.1951 0.2042 -0.5250 33 1 6.2525 -3.0558 0.8231 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057939566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:34 Heat of formation + Delta-G solvation = -137.733980 kcal Electronic energy + Delta-G solvation = -18508.836914 eV Core-core repulsion = 15498.602554 eV Total energy + Delta-G solvation = -3010.234359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.73273 -40.58093 -38.40261 -37.01700 -35.69936 -33.61633 -32.66778 -29.53331 -28.82808 -26.83380 -25.79476 -24.78010 -21.83022 -21.56690 -19.38235 -18.80443 -18.52716 -17.81243 -17.08339 -16.68423 -16.50934 -16.05663 -15.69502 -14.81501 -14.65739 -14.51792 -14.34838 -14.19171 -13.71147 -13.32972 -13.06867 -12.88914 -12.75059 -12.65894 -12.56461 -12.38331 -12.23442 -11.84847 -11.69535 -11.56266 -11.28835 -10.63089 -9.81043 -8.92122 -8.22009 -6.33996 0.10246 0.48042 1.10807 1.32045 1.37022 1.44480 2.09863 2.36166 2.58046 2.75315 3.07715 3.84948 3.92908 3.99953 4.22673 4.36687 4.46031 4.47805 4.58453 4.71394 4.76393 4.80173 4.89560 5.02236 5.11043 5.27377 5.34669 5.44946 5.54150 5.62999 5.70078 5.83156 6.10972 6.62160 6.73760 6.94578 7.32159 8.86781 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.009851 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.699792 B = 2841.713740 C = 3920.150930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.103 3.897 4 C -0.174 4.174 5 C -0.088 4.088 6 C -0.092 4.092 7 C -0.110 4.110 8 C -0.105 4.105 9 C 0.548 3.452 10 O -0.535 6.535 11 O -0.506 6.506 12 C -0.074 4.074 13 C 0.070 3.930 14 C -0.516 4.516 15 H 0.042 0.958 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.960 3.040 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.276 1.276 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.169 0.831 26 H 0.178 0.822 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.425 0.575 31 H 0.011 0.989 32 H -0.005 1.005 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 13.075 -3.597 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.057 3.943 4 C -0.193 4.193 5 C -0.105 4.105 6 C -0.093 4.093 7 C -0.166 4.166 8 C -0.106 4.106 9 C 0.392 3.608 10 O -0.424 6.424 11 O -0.319 6.319 12 C -0.075 4.075 13 C 0.033 3.967 14 C -0.554 4.554 15 H 0.061 0.939 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.784 3.216 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.201 1.201 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.126 0.874 25 H 0.186 0.814 26 H 0.196 0.804 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.062 0.938 30 H 0.286 0.714 31 H 0.029 0.971 32 H 0.014 0.986 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.134 12.705 -3.384 16.600 hybrid contribution 1.181 -0.881 0.803 1.678 sum -8.953 11.824 -2.581 15.054 Atomic orbital electron populations 1.23362 0.76640 1.05203 1.02533 1.86225 1.23315 1.26823 1.88584 1.18780 0.90836 0.85826 0.98812 1.21720 1.01497 0.90997 1.05047 1.21074 0.92373 0.98393 0.98697 1.20096 0.94568 0.93759 1.00869 1.20855 0.99936 0.92135 1.03717 1.18745 0.88819 0.94289 1.08771 1.20974 0.89140 0.69632 0.81057 1.90849 1.70533 1.46830 1.34212 1.84624 1.28031 1.84988 1.34265 1.19748 0.92868 0.94965 0.99912 1.17864 0.92401 0.90000 0.96458 1.21124 1.33167 1.09258 0.91847 0.93929 1.25850 0.95334 0.96306 1.01731 1.70063 1.36820 1.17162 1.32707 0.85583 0.78750 0.77666 0.79608 1.18860 1.19764 1.20117 0.91387 0.90660 0.87430 0.81377 0.80448 0.89062 0.87857 0.93802 0.71411 0.97071 0.98641 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.53 16 2 O -0.34 -13.57 9.54 -92.53 -0.88 -14.45 16 3 C 0.10 4.13 6.65 22.47 0.15 4.28 16 4 C -0.17 -4.97 9.03 22.42 0.20 -4.76 16 5 C -0.09 -2.23 9.68 22.21 0.22 -2.02 16 6 C -0.09 -2.93 5.92 -19.59 -0.12 -3.05 16 7 C -0.11 -2.61 9.62 71.24 0.69 -1.93 16 8 C -0.11 -4.48 5.75 -20.11 -0.12 -4.60 16 9 C 0.55 24.15 4.69 70.33 0.33 24.48 16 10 O -0.53 -26.83 17.89 19.94 0.36 -26.47 16 11 O -0.51 -18.25 13.44 -56.21 -0.76 -19.00 16 12 C -0.07 -3.56 5.12 -19.49 -0.10 -3.66 16 13 C 0.07 4.07 4.48 29.10 0.13 4.20 16 14 C -0.52 -32.24 9.09 25.60 0.23 -32.01 16 15 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 16 C 0.01 0.35 5.46 84.66 0.46 0.82 16 17 N -0.93 -59.01 13.29 21.45 0.28 -58.72 16 18 Si 0.96 47.95 29.54 68.60 2.03 49.98 16 19 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 22 H 0.07 1.41 7.66 -2.39 -0.02 1.40 16 23 H 0.07 1.43 7.66 -2.39 -0.02 1.42 16 24 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.17 3.28 6.28 -2.91 -0.02 3.26 16 26 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 29 H 0.04 1.21 7.07 -2.39 -0.02 1.20 16 30 H 0.42 10.97 9.11 -74.06 -0.67 10.30 16 31 H 0.01 0.69 7.54 -2.39 -0.02 0.67 16 32 H 0.00 -0.29 7.08 -2.39 -0.02 -0.30 16 33 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -83.02 291.19 4.68 -78.34 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.46 Total: 7.06 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 3.19 Total: -16.72 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.28 Total: -58.72 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -1.28 Total: -59.93 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -83.02 4.68 -78.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057939566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.397 kcal (2) G-P(sol) polarization free energy of solvation -83.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds