Wall clock time and date at job start Mon Mar 30 2020 06:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99632 * 2 1 4 4 H 1.48507 * 109.47222 * 239.99996 * 3 2 1 5 5 H 1.48497 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47149 * 120.00227 * 3 2 1 7 7 C 1.37876 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99993 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.79164 * 59.51158 * 9 7 2 11 11 C 1.54243 * 109.62909 * 299.02289 * 9 7 2 12 12 C 1.45545 * 112.40468 * 160.30600 * 11 9 7 13 13 C 1.54244 * 112.40851 * 61.94145 * 12 11 9 14 14 C 1.50398 * 108.42039 * 280.02855 * 13 12 11 15 15 C 1.54070 * 112.53626 * 94.28776 * 14 13 12 16 16 C 1.50481 * 109.62783 * 179.97438 * 9 7 2 17 17 H 1.09003 * 108.87250 * 93.08721 * 16 9 7 18 18 C 1.50695 * 108.87510 * 334.63839 * 16 9 7 19 19 C 1.33392 * 125.19983 * 116.74388 * 18 16 9 20 20 C 1.38427 * 114.91572 * 179.85340 * 19 18 16 21 21 C 1.33389 * 114.92511 * 0.43139 * 20 19 18 22 22 S 1.75877 * 125.20486 * 297.04091 * 18 16 9 23 23 H 0.97000 * 120.00087 * 0.02562 * 1 2 3 24 24 H 1.09001 * 108.89523 * 281.05795 * 11 9 7 25 25 H 1.08998 * 108.89592 * 39.65382 * 11 9 7 26 26 H 1.08999 * 108.89206 * 182.68833 * 12 11 9 27 27 H 1.08993 * 108.89726 * 301.27650 * 12 11 9 28 28 H 1.09001 * 109.62883 * 39.71531 * 13 12 11 29 29 H 1.08997 * 109.63086 * 160.10733 * 13 12 11 30 30 H 1.08998 * 108.94931 * 333.43907 * 14 13 12 31 31 H 1.09005 * 108.77228 * 215.01201 * 14 13 12 32 32 H 1.09002 * 108.81528 * 197.30800 * 15 14 13 33 33 H 1.08996 * 108.81060 * 78.91992 * 15 14 13 34 34 H 1.07997 * 122.54212 * 0.02562 * 19 18 16 35 35 H 1.07998 * 122.53557 * 180.19946 * 20 19 18 36 36 H 1.07995 * 125.20733 * 179.74555 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6163 -2.5587 -0.8835 11 6 0.3812 -2.5951 1.2706 12 6 -0.6926 -3.5682 1.1351 13 6 -0.1641 -4.9993 0.9080 14 6 0.2138 -5.1421 -0.5407 15 6 1.7076 -4.8604 -0.7918 16 6 2.2259 -3.6455 0.0005 17 1 2.4120 -3.9501 1.0305 18 6 3.5233 -3.1822 -0.6102 19 6 4.6944 -3.1222 0.0257 20 6 5.7523 -2.6666 -0.7421 21 6 5.4385 -2.3480 -1.9988 22 16 3.7237 -2.6310 -2.2683 23 1 -0.4850 0.8400 -0.0004 24 1 1.0136 -2.8820 2.1108 25 1 -0.0544 -1.6171 1.4749 26 1 -1.2973 -3.5551 2.0420 27 1 -1.3196 -3.2865 0.2893 28 1 0.7118 -5.1698 1.5340 29 1 -0.9409 -5.7210 1.1608 30 1 -0.3806 -4.4454 -1.1318 31 1 -0.0126 -6.1582 -0.8638 32 1 1.8564 -4.6753 -1.8557 33 1 2.2841 -5.7397 -0.5045 34 1 4.8091 -3.4101 1.0603 35 1 6.7549 -2.5724 -0.3519 36 1 6.1314 -1.9732 -2.7376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062609831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:41 Heat of formation + Delta-G solvation = 13.404096 kcal Electronic energy + Delta-G solvation = -17002.128811 eV Core-core repulsion = 14577.034256 eV Total energy + Delta-G solvation = -2425.094555 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.65214 -36.67202 -33.22665 -32.33310 -30.65382 -27.86055 -25.73658 -24.09388 -22.70309 -22.03731 -19.63901 -18.67171 -18.29522 -16.74024 -15.76630 -14.87492 -14.64365 -14.14447 -13.75462 -13.62508 -12.91519 -12.41253 -12.30325 -12.18709 -11.95088 -11.59793 -11.37740 -11.16086 -10.85113 -10.78905 -10.52587 -10.24643 -10.21399 -9.96731 -9.63011 -9.51933 -9.21690 -9.12471 -8.71233 -8.21657 -7.70160 -7.54306 -5.91762 -3.94588 1.84080 2.47306 2.86753 3.36978 3.40669 3.45692 3.51909 4.51269 5.31166 5.33128 5.46507 5.48338 5.64710 5.81165 5.95891 6.03829 6.09427 6.22533 6.25924 6.31208 6.36394 6.45692 6.57560 6.71406 6.77051 6.86504 6.88662 7.02752 7.06541 7.21508 7.27845 7.38393 7.50473 7.83488 8.03228 8.15904 8.52483 9.07978 9.69302 11.14399 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.013532 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.403934 B = 2068.647892 C = 3475.066501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.062 3.938 10 H 0.032 0.968 11 C -0.115 4.115 12 C -0.105 4.105 13 C -0.117 4.117 14 C -0.112 4.112 15 C -0.108 4.108 16 C -0.016 4.016 17 H 0.069 0.931 18 C -0.082 4.082 19 C -0.187 4.187 20 C -0.127 4.127 21 C -0.255 4.255 22 S 0.112 5.888 23 H 0.258 0.742 24 H 0.024 0.976 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 -8.118 -1.344 9.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.044 3.956 10 H 0.050 0.950 11 C -0.153 4.153 12 C -0.143 4.143 13 C -0.155 4.155 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.037 4.037 17 H 0.087 0.913 18 C -0.200 4.200 19 C -0.216 4.216 20 C -0.158 4.158 21 C -0.390 4.390 22 S 0.376 5.624 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.080 -7.810 -2.599 8.789 hybrid contribution 1.531 1.043 1.310 2.269 sum 4.611 -6.768 -1.289 8.290 Atomic orbital electron populations 1.69903 1.05746 1.26203 1.51044 1.24881 0.94633 0.98642 0.95412 0.86854 0.79816 0.83905 0.78723 1.20202 1.21506 1.20466 1.21464 0.93252 0.90200 1.49524 0.91773 1.18450 0.91889 0.90692 0.94618 0.95000 1.20490 0.96374 1.00026 0.98383 1.20513 0.99350 0.94200 1.00207 1.21361 0.99971 0.97668 0.96489 1.21254 0.96322 1.00069 0.97265 1.22020 0.95497 0.97232 0.99811 1.19997 0.90737 0.95798 0.97131 0.91271 1.24495 0.98485 1.00910 0.96064 1.19902 0.92150 1.08557 1.00946 1.19945 0.99674 1.02577 0.93654 1.25415 0.99414 1.12831 1.01343 1.84097 1.02704 1.63677 1.11902 0.93231 0.95767 0.89162 0.94615 0.92663 0.92322 0.93403 0.91750 0.93528 0.92657 0.93309 0.85504 0.85817 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 11.47 55.43 0.64 -24.28 16 2 C 0.07 1.77 5.18 -17.82 -0.09 1.68 16 3 Si 0.88 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.51 -13.25 7.26 -34.44 -0.25 -13.50 16 8 H 0.06 1.70 5.30 -52.48 -0.28 1.43 16 9 C 0.06 1.45 1.61 -92.38 -0.15 1.30 16 10 H 0.03 0.82 6.97 -51.93 -0.36 0.46 16 11 C -0.11 -2.59 4.51 -29.60 -0.13 -2.73 16 12 C -0.11 -2.03 5.26 -29.60 -0.16 -2.18 16 13 C -0.12 -1.92 5.61 -27.38 -0.15 -2.07 16 14 C -0.11 -1.82 5.30 -27.47 -0.15 -1.96 16 15 C -0.11 -1.85 5.22 -25.63 -0.13 -1.99 16 16 C -0.02 -0.33 1.97 -92.49 -0.18 -0.51 16 17 H 0.07 1.37 6.56 -51.93 -0.34 1.03 16 18 C -0.08 -1.63 2.85 -36.00 -0.10 -1.73 16 19 C -0.19 -3.51 9.52 -41.21 -0.39 -3.91 16 20 C -0.13 -2.19 10.18 -41.21 -0.42 -2.61 16 21 C -0.25 -4.40 11.23 29.04 0.33 -4.07 16 22 S 0.11 2.16 21.71 -107.50 -2.33 -0.17 16 23 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.02 0.53 7.47 -51.93 -0.39 0.14 16 25 H 0.09 2.34 5.90 -51.93 -0.31 2.04 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 1.13 7.46 -51.93 -0.39 0.74 16 28 H 0.06 0.96 6.98 -51.93 -0.36 0.59 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.14 6.62 -51.93 -0.34 0.80 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.96 7.36 -51.93 -0.38 0.58 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 35 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 36 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -27.32 285.41 -9.65 -36.97 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.24 Total: 0.88 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: -1.98 Total: -34.27 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.64 Total: -24.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.33 Total: -0.17 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.32 -9.65 -36.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062609831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.371 kcal (2) G-P(sol) polarization free energy of solvation -27.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds