Wall clock time and date at job start Mon Mar 30 2020 06:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99632 * 2 1 4 4 H 1.48507 * 109.47222 * 239.99996 * 3 2 1 5 5 H 1.48497 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47149 * 120.00227 * 3 2 1 7 7 C 1.37876 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99993 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.79164 * 59.51158 * 9 7 2 11 11 C 1.54243 * 109.62909 * 299.02289 * 9 7 2 12 12 C 1.45545 * 112.40468 * 160.30600 * 11 9 7 13 13 C 1.54244 * 112.40851 * 61.94145 * 12 11 9 14 14 C 1.50398 * 108.42039 * 280.02855 * 13 12 11 15 15 C 1.54070 * 112.53626 * 94.28776 * 14 13 12 16 16 C 1.50481 * 109.62783 * 179.97438 * 9 7 2 17 17 H 1.09003 * 108.87250 * 93.08721 * 16 9 7 18 18 C 1.50695 * 108.87510 * 334.63839 * 16 9 7 19 19 C 1.33392 * 125.19983 * 116.74388 * 18 16 9 20 20 C 1.38427 * 114.91572 * 179.85340 * 19 18 16 21 21 C 1.33389 * 114.92511 * 0.43139 * 20 19 18 22 22 S 1.75877 * 125.20486 * 297.04091 * 18 16 9 23 23 H 0.97000 * 120.00087 * 0.02562 * 1 2 3 24 24 H 1.09001 * 108.89523 * 281.05795 * 11 9 7 25 25 H 1.08998 * 108.89592 * 39.65382 * 11 9 7 26 26 H 1.08999 * 108.89206 * 182.68833 * 12 11 9 27 27 H 1.08993 * 108.89726 * 301.27650 * 12 11 9 28 28 H 1.09001 * 109.62883 * 39.71531 * 13 12 11 29 29 H 1.08997 * 109.63086 * 160.10733 * 13 12 11 30 30 H 1.08998 * 108.94931 * 333.43907 * 14 13 12 31 31 H 1.09005 * 108.77228 * 215.01201 * 14 13 12 32 32 H 1.09002 * 108.81528 * 197.30800 * 15 14 13 33 33 H 1.08996 * 108.81060 * 78.91992 * 15 14 13 34 34 H 1.07997 * 122.54212 * 0.02562 * 19 18 16 35 35 H 1.07998 * 122.53557 * 180.19946 * 20 19 18 36 36 H 1.07995 * 125.20733 * 179.74555 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6163 -2.5587 -0.8835 11 6 0.3812 -2.5951 1.2706 12 6 -0.6926 -3.5682 1.1351 13 6 -0.1641 -4.9993 0.9080 14 6 0.2138 -5.1421 -0.5407 15 6 1.7076 -4.8604 -0.7918 16 6 2.2259 -3.6455 0.0005 17 1 2.4120 -3.9501 1.0305 18 6 3.5233 -3.1822 -0.6102 19 6 4.6944 -3.1222 0.0257 20 6 5.7523 -2.6666 -0.7421 21 6 5.4385 -2.3480 -1.9988 22 16 3.7237 -2.6310 -2.2683 23 1 -0.4850 0.8400 -0.0004 24 1 1.0136 -2.8820 2.1108 25 1 -0.0544 -1.6171 1.4749 26 1 -1.2973 -3.5551 2.0420 27 1 -1.3196 -3.2865 0.2893 28 1 0.7118 -5.1698 1.5340 29 1 -0.9409 -5.7210 1.1608 30 1 -0.3806 -4.4454 -1.1318 31 1 -0.0126 -6.1582 -0.8638 32 1 1.8564 -4.6753 -1.8557 33 1 2.2841 -5.7397 -0.5045 34 1 4.8091 -3.4101 1.0603 35 1 6.7549 -2.5724 -0.3519 36 1 6.1314 -1.9732 -2.7376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062609831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:41 Heat of formation + Delta-G solvation = 1.221158 kcal Electronic energy + Delta-G solvation = -17002.657103 eV Core-core repulsion = 14577.034256 eV Total energy + Delta-G solvation = -2425.622847 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.109 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.21746 -38.09723 -35.05482 -33.88464 -32.38843 -29.34947 -27.56906 -25.54973 -24.41608 -23.50362 -21.27028 -20.15034 -19.75688 -18.57149 -17.45330 -16.52383 -16.28704 -15.65886 -15.42501 -15.03315 -14.49887 -14.18807 -13.93395 -13.61146 -13.40252 -13.13590 -12.97588 -12.80247 -12.68508 -12.43649 -12.30361 -11.94342 -11.66868 -11.37239 -11.33530 -11.10940 -10.89974 -10.80515 -10.56523 -10.24646 -9.17931 -9.03526 -7.99571 -6.05603 0.41337 1.03840 1.38862 1.40321 1.44266 1.46355 2.10972 2.47751 3.29418 3.91282 3.95094 4.16181 4.37243 4.42265 4.53027 4.56794 4.67124 4.72317 4.86802 4.88027 4.97442 5.01403 5.10576 5.27398 5.30759 5.39997 5.45932 5.54044 5.57502 5.62689 5.73434 5.74884 5.82804 5.86446 6.11640 6.24679 6.53172 7.04089 7.59531 9.05387 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.013532 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.403934 B = 2068.647892 C = 3475.066501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 0.925 3.075 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.068 3.932 10 H 0.000 1.000 11 C -0.107 4.107 12 C -0.104 4.104 13 C -0.108 4.108 14 C -0.111 4.111 15 C -0.104 4.104 16 C -0.013 4.013 17 H 0.071 0.929 18 C -0.107 4.107 19 C -0.188 4.188 20 C -0.132 4.132 21 C -0.245 4.245 22 S 0.070 5.930 23 H 0.254 0.746 24 H 0.027 0.973 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 -9.447 -0.969 11.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.180 4.180 3 Si 0.753 3.247 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.049 3.951 10 H 0.018 0.982 11 C -0.145 4.145 12 C -0.142 4.142 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.142 4.142 16 C -0.033 4.033 17 H 0.089 0.911 18 C -0.224 4.224 19 C -0.217 4.217 20 C -0.163 4.163 21 C -0.380 4.380 22 S 0.333 5.667 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.174 0.826 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.633 -9.142 -2.222 10.487 hybrid contribution 1.111 1.462 1.190 2.188 sum 5.745 -7.680 -1.032 9.646 Atomic orbital electron populations 1.70031 1.06734 1.26330 1.52519 1.25488 0.95258 1.01225 0.95987 0.86113 0.78810 0.81261 0.78559 1.20132 1.21471 1.20188 1.21769 0.93239 0.91403 1.47854 0.92119 1.18295 0.92088 0.91265 0.93445 0.98231 1.20354 0.97082 0.99052 0.98023 1.20434 0.98104 0.95644 0.99969 1.21300 1.00955 0.95766 0.96532 1.21252 0.95254 1.01264 0.97035 1.21990 0.96417 0.96771 0.99007 1.19839 0.90147 0.95457 0.97840 0.91081 1.24544 0.98940 1.02608 0.96338 1.20245 0.92230 1.07612 1.01651 1.20282 1.00769 1.01858 0.93419 1.25765 0.98107 1.11976 1.02146 1.84220 1.05343 1.64639 1.12453 0.93665 0.95430 0.93031 0.93422 0.94608 0.91751 0.90510 0.94043 0.90387 0.93327 0.90982 0.84275 0.82610 0.80434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.90 11.47 21.45 0.25 -52.66 16 2 C 0.02 1.01 5.18 84.65 0.44 1.45 16 3 Si 0.92 44.68 29.54 68.60 2.03 46.71 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.50 -26.74 7.26 25.60 0.19 -26.55 16 8 H 0.06 3.22 5.30 -2.91 -0.02 3.21 16 9 C 0.07 3.22 1.61 -11.94 -0.02 3.20 16 10 H 0.00 -0.02 6.97 -2.39 -0.02 -0.04 16 11 C -0.11 -4.91 4.51 28.74 0.13 -4.78 16 12 C -0.10 -3.99 5.26 28.74 0.15 -3.83 16 13 C -0.11 -3.29 5.61 30.17 0.17 -3.12 16 14 C -0.11 -3.41 5.30 30.12 0.16 -3.25 16 15 C -0.10 -3.43 5.22 31.31 0.16 -3.26 16 16 C -0.01 -0.50 1.97 -12.01 -0.02 -0.52 16 17 H 0.07 2.72 6.56 -2.39 -0.02 2.70 16 18 C -0.11 -4.15 2.85 24.59 0.07 -4.08 16 19 C -0.19 -6.69 9.52 21.22 0.20 -6.48 16 20 C -0.13 -4.17 10.18 21.22 0.22 -3.96 16 21 C -0.24 -7.86 11.23 66.72 0.75 -7.11 16 22 S 0.07 2.66 21.71 -56.49 -1.23 1.43 16 23 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.03 1.20 7.47 -2.39 -0.02 1.18 16 25 H 0.05 2.76 5.90 -2.39 -0.01 2.75 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.49 7.46 -2.39 -0.02 1.47 16 28 H 0.06 1.91 6.98 -2.39 -0.02 1.89 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.46 6.62 -2.39 -0.02 1.45 16 31 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.05 1.66 7.36 -2.39 -0.02 1.64 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 36 H 0.18 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -59.37 285.41 4.69 -54.68 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.05 Total: 12.13 kcal Atomic # 6 Polarization: -64.89 SS G_CDS: 2.59 Total: -62.30 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.25 Total: -52.66 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.23 Total: 1.43 kcal Total: -59.37 4.69 -54.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062609831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.901 kcal (2) G-P(sol) polarization free energy of solvation -59.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds