Wall clock time and date at job start Mon Mar 30 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38746 * 120.05840 * 359.72194 * 3 2 1 5 5 C 1.38125 * 119.94295 * 179.74674 * 4 3 2 6 6 C 1.38283 * 120.05591 * 0.53376 * 5 4 3 7 7 C 1.38241 * 120.11360 * 359.74037 * 6 5 4 8 8 C 1.38169 * 120.05585 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.03323 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47084 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.46526 * 300.01736 * 9 8 7 12 12 C 1.50694 * 109.46832 * 185.00094 * 11 9 8 13 13 H 1.08005 * 120.00489 * 359.97438 * 12 11 9 14 14 C 1.37881 * 119.99930 * 180.02562 * 12 11 9 15 15 N 1.31507 * 120.00066 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47306 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46995 * 119.99780 * 16 14 12 19 19 H 1.48490 * 109.47295 * 239.99908 * 16 14 12 20 20 C 1.50696 * 109.46931 * 60.01529 * 9 8 7 21 21 O 1.20823 * 120.00727 * 0.02562 * 20 9 8 22 22 O 1.34234 * 119.99310 * 180.02562 * 20 9 8 23 23 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 24 24 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 26 26 H 1.08001 * 120.02813 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.97374 * 180.29271 * 5 4 3 28 28 H 1.08002 * 119.94724 * 179.76667 * 6 5 4 29 29 H 1.08003 * 119.97763 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.47183 * 304.99892 * 11 9 8 31 31 H 1.08998 * 109.46793 * 64.99961 * 11 9 8 32 32 H 0.96998 * 120.00517 * 180.02562 * 15 14 12 33 33 H 0.96705 * 116.99603 * 180.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 -0.0005 6 6 3.3018 3.6758 -0.0006 7 6 4.0559 2.5172 -0.0005 8 6 3.4311 1.2849 0.0002 9 6 4.2537 0.0222 0.0008 10 1 3.5910 -0.8432 0.0008 11 6 5.1367 -0.0118 -1.2483 12 6 5.8674 -1.3282 -1.3112 13 1 5.7175 -2.0667 -0.5375 14 6 6.7283 -1.5896 -2.3560 15 7 6.9122 -0.6899 -3.2974 16 14 7.6347 -3.2211 -2.4336 17 1 7.2572 -4.0533 -1.2630 18 1 7.2678 -3.9322 -3.6847 19 1 9.0990 -2.9753 -2.4152 20 6 5.1229 -0.0104 1.2315 21 8 5.0786 0.8981 2.0267 22 8 5.9463 -1.0490 1.4441 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2128 2.3203 -0.0100 27 1 1.3339 4.5114 -0.0003 28 1 3.7922 4.6381 -0.0002 29 1 5.1344 2.5753 -0.0001 30 1 4.5147 0.1013 -2.1362 31 1 5.8593 0.8032 -1.2047 32 1 7.5175 -0.8738 -4.0326 33 1 6.4840 -1.0256 2.2475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084487509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:07 Heat of formation + Delta-G solvation = -111.226050 kcal Electronic energy + Delta-G solvation = -18390.579231 eV Core-core repulsion = 15381.494342 eV Total energy + Delta-G solvation = -3009.084889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26120 -39.17562 -37.09969 -35.28152 -34.22356 -32.15098 -29.81152 -29.21672 -27.07355 -25.64522 -22.54542 -22.29561 -21.66578 -19.58950 -17.74513 -17.30756 -16.38571 -16.17551 -15.52185 -15.36780 -14.88573 -14.79836 -14.22628 -14.06651 -13.36820 -12.99990 -12.60056 -12.34307 -12.12462 -11.80917 -11.55376 -11.33933 -10.90645 -10.88685 -10.81458 -10.71012 -10.43719 -10.38432 -9.59591 -9.52060 -9.11169 -8.42153 -8.34809 -7.80117 -5.97926 -3.98703 1.67745 1.79554 3.04821 3.34408 3.42031 3.47741 3.52103 3.85116 4.27242 4.49855 5.00195 5.13511 5.21578 5.24498 5.36628 5.40376 5.53235 5.63429 5.70143 5.97849 6.13064 6.14526 6.37614 6.57497 6.61652 6.76782 6.94538 7.13505 7.26454 7.58321 7.59780 7.67575 8.01659 8.34815 8.75456 9.09189 9.64742 11.13553 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.006847 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.779186 B = 4088.445159 C = 4204.808642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.130 3.870 4 C -0.215 4.215 5 C -0.089 4.089 6 C -0.159 4.159 7 C -0.046 4.046 8 C -0.087 4.087 9 C -0.036 4.036 10 H 0.111 0.889 11 C 0.038 3.962 12 C -0.512 4.512 13 H 0.073 0.927 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.501 3.499 21 O -0.543 6.543 22 O -0.486 6.486 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.035 0.965 31 H 0.022 0.978 32 H 0.259 0.741 33 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.409 4.295 6.722 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.085 3.915 4 C -0.233 4.233 5 C -0.108 4.108 6 C -0.178 4.178 7 C -0.064 4.064 8 C -0.088 4.088 9 C -0.055 4.055 10 H 0.129 0.871 11 C 0.001 3.999 12 C -0.550 4.550 13 H 0.091 0.909 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.722 3.278 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.212 1.212 20 C 0.345 3.655 21 O -0.434 6.434 22 O -0.294 6.294 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.069 0.931 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.490 4.344 6.405 13.036 hybrid contribution 0.654 -0.614 0.345 0.960 sum -9.836 3.731 6.749 12.499 Atomic orbital electron populations 1.23000 0.79040 1.03632 1.00930 1.86106 1.20779 1.26908 1.88771 1.18771 0.91596 0.84144 0.96946 1.21051 0.99418 0.92362 1.10503 1.20805 0.94617 0.96582 0.98756 1.20978 0.93809 0.98213 1.04770 1.20868 1.00231 0.90877 0.94450 1.18992 0.89955 0.95427 1.04417 1.20109 0.95714 0.95919 0.93793 0.87111 1.19173 0.93380 0.98360 0.89015 1.21360 1.24382 1.01102 1.08157 0.90906 1.24991 0.96888 0.96891 0.95677 1.69976 1.37324 1.34267 1.12185 0.86501 0.79403 0.84015 0.77874 1.19528 1.21233 1.21231 1.23475 0.77379 0.78305 0.86312 1.90619 1.67307 1.38042 1.47403 1.84877 1.52176 1.45833 1.46527 0.92829 0.88462 0.93078 0.85896 0.86335 0.86203 0.85481 0.94720 0.95928 0.93103 0.75539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.22 9.26 -19.44 -0.18 -5.40 16 3 C 0.13 2.32 6.66 -39.22 -0.26 2.06 16 4 C -0.21 -3.19 9.04 -39.44 -0.36 -3.55 16 5 C -0.09 -1.27 10.04 -39.61 -0.40 -1.67 16 6 C -0.16 -2.52 10.04 -39.56 -0.40 -2.91 16 7 C -0.05 -0.87 7.98 -39.61 -0.32 -1.19 16 8 C -0.09 -1.74 4.41 -104.47 -0.46 -2.20 16 9 C -0.04 -0.79 2.42 -92.92 -0.22 -1.02 16 10 H 0.11 2.41 6.99 -51.93 -0.36 2.04 16 11 C 0.04 0.96 4.18 -27.88 -0.12 0.84 16 12 C -0.51 -14.03 8.05 -34.44 -0.28 -14.31 16 13 H 0.07 1.96 6.36 -52.48 -0.33 1.62 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 C 0.50 10.63 7.48 36.00 0.27 10.90 16 21 O -0.54 -11.92 15.87 -18.75 -0.30 -12.22 16 22 O -0.49 -9.48 11.02 -39.27 -0.43 -9.92 16 23 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 24 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 26 H 0.12 1.45 6.30 -52.49 -0.33 1.12 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 28 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.13 2.48 7.58 -52.48 -0.40 2.08 16 30 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.02 0.61 7.57 -51.93 -0.39 0.21 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.39 5.45 9.10 45.56 0.41 5.86 16 LS Contribution 285.81 15.07 4.31 4.31 Total: -1.00 -33.00 285.81 -5.56 -38.56 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -3.03 Total: 4.21 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.64 Total: -10.24 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.91 Total: -27.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.00 -5.56 -38.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.665 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds