Wall clock time and date at job start Mon Mar 30 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38746 * 120.05840 * 359.72194 * 3 2 1 5 5 C 1.38125 * 119.94295 * 179.74674 * 4 3 2 6 6 C 1.38283 * 120.05591 * 0.53376 * 5 4 3 7 7 C 1.38241 * 120.11360 * 359.74037 * 6 5 4 8 8 C 1.38169 * 120.05585 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.03323 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47084 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.46526 * 300.01736 * 9 8 7 12 12 C 1.50694 * 109.46832 * 185.00094 * 11 9 8 13 13 H 1.08005 * 120.00489 * 359.97438 * 12 11 9 14 14 C 1.37881 * 119.99930 * 180.02562 * 12 11 9 15 15 N 1.31507 * 120.00066 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47306 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46995 * 119.99780 * 16 14 12 19 19 H 1.48490 * 109.47295 * 239.99908 * 16 14 12 20 20 C 1.50696 * 109.46931 * 60.01529 * 9 8 7 21 21 O 1.20823 * 120.00727 * 0.02562 * 20 9 8 22 22 O 1.34234 * 119.99310 * 180.02562 * 20 9 8 23 23 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 24 24 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 26 26 H 1.08001 * 120.02813 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.97374 * 180.29271 * 5 4 3 28 28 H 1.08002 * 119.94724 * 179.76667 * 6 5 4 29 29 H 1.08003 * 119.97763 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.47183 * 304.99892 * 11 9 8 31 31 H 1.08998 * 109.46793 * 64.99961 * 11 9 8 32 32 H 0.96998 * 120.00517 * 180.02562 * 15 14 12 33 33 H 0.96705 * 116.99603 * 180.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 -0.0005 6 6 3.3018 3.6758 -0.0006 7 6 4.0559 2.5172 -0.0005 8 6 3.4311 1.2849 0.0002 9 6 4.2537 0.0222 0.0008 10 1 3.5910 -0.8432 0.0008 11 6 5.1367 -0.0118 -1.2483 12 6 5.8674 -1.3282 -1.3112 13 1 5.7175 -2.0667 -0.5375 14 6 6.7283 -1.5896 -2.3560 15 7 6.9122 -0.6899 -3.2974 16 14 7.6347 -3.2211 -2.4336 17 1 7.2572 -4.0533 -1.2630 18 1 7.2678 -3.9322 -3.6847 19 1 9.0990 -2.9753 -2.4152 20 6 5.1229 -0.0104 1.2315 21 8 5.0786 0.8981 2.0267 22 8 5.9463 -1.0490 1.4441 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2128 2.3203 -0.0100 27 1 1.3339 4.5114 -0.0003 28 1 3.7922 4.6381 -0.0002 29 1 5.1344 2.5753 -0.0001 30 1 4.5147 0.1013 -2.1362 31 1 5.8593 0.8032 -1.2047 32 1 7.5175 -0.8738 -4.0326 33 1 6.4840 -1.0256 2.2475 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084487509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:07 Heat of formation + Delta-G solvation = -133.001624 kcal Electronic energy + Delta-G solvation = -18391.523491 eV Core-core repulsion = 15381.494342 eV Total energy + Delta-G solvation = -3010.029149 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.69635 -40.63014 -38.33348 -36.90646 -36.04893 -34.05725 -31.06032 -30.77022 -28.13337 -27.46928 -24.47526 -23.73398 -22.94215 -21.15437 -19.16954 -18.81728 -18.34098 -17.63129 -16.92104 -16.61275 -16.50340 -16.31186 -15.98040 -15.31783 -14.67711 -14.48108 -14.20130 -14.06829 -13.65272 -13.30961 -13.01421 -12.86556 -12.62462 -12.49346 -12.37264 -12.16235 -11.94337 -11.88314 -11.43772 -11.28685 -11.16694 -10.52212 -9.74726 -9.06730 -8.14008 -6.22274 0.39300 0.53625 1.34403 1.44092 1.44932 1.59020 2.36506 2.44403 2.46656 2.94040 3.20070 3.75124 3.93204 4.12550 4.26513 4.36051 4.45210 4.46837 4.56861 4.63341 4.66145 4.76422 4.84622 5.10205 5.34279 5.39746 5.46328 5.57673 5.65406 5.73340 5.84903 5.92101 6.21645 6.51749 6.91942 7.21342 7.45411 8.98215 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.006847 C = 0.006657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.779186 B = 4088.445159 C = 4204.808642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.119 3.881 4 C -0.209 4.209 5 C -0.078 4.078 6 C -0.164 4.164 7 C -0.071 4.071 8 C -0.126 4.126 9 C -0.028 4.028 10 H 0.106 0.894 11 C 0.052 3.948 12 C -0.522 4.522 13 H 0.077 0.923 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.963 3.037 17 H -0.259 1.259 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.503 3.497 21 O -0.551 6.551 22 O -0.492 6.492 23 H 0.067 0.933 24 H 0.115 0.885 25 H 0.069 0.931 26 H 0.160 0.840 27 H 0.163 0.837 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.006 0.994 31 H -0.004 1.004 32 H 0.261 0.739 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 4.417 7.488 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.074 3.926 4 C -0.227 4.227 5 C -0.095 4.095 6 C -0.182 4.182 7 C -0.089 4.089 8 C -0.126 4.126 9 C -0.047 4.047 10 H 0.124 0.876 11 C 0.015 3.985 12 C -0.560 4.560 13 H 0.095 0.905 14 C -0.197 4.197 15 N -0.577 5.577 16 Si 0.788 3.212 17 H -0.183 1.183 18 H -0.207 1.207 19 H -0.208 1.208 20 C 0.347 3.653 21 O -0.443 6.443 22 O -0.303 6.303 23 H 0.086 0.914 24 H 0.134 0.866 25 H 0.088 0.912 26 H 0.178 0.822 27 H 0.181 0.819 28 H 0.163 0.837 29 H 0.122 0.878 30 H 0.025 0.975 31 H 0.015 0.985 32 H 0.070 0.930 33 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -12.118 4.455 7.198 14.782 hybrid contribution 1.078 -0.614 0.134 1.248 sum -11.040 3.841 7.333 13.798 Atomic orbital electron populations 1.23368 0.76262 1.05516 1.02454 1.86063 1.23726 1.26879 1.88706 1.18927 0.91072 0.85634 0.96974 1.21497 1.01158 0.91415 1.08656 1.21328 0.94088 0.98087 0.96022 1.21300 0.94858 0.98010 1.04043 1.20857 0.99552 0.92130 0.96404 1.18993 0.91305 0.94664 1.07679 1.19846 0.95248 0.97375 0.92221 0.87588 1.18873 0.92805 0.96818 0.90019 1.21700 1.24343 1.01723 1.08193 0.90452 1.25896 0.97877 1.00597 0.95318 1.70110 1.38245 1.36424 1.12934 0.85417 0.77945 0.79556 0.78239 1.18322 1.20742 1.20822 1.23339 0.77433 0.78393 0.86088 1.90596 1.67638 1.38389 1.47705 1.84793 1.52205 1.45109 1.48193 0.91437 0.86648 0.91213 0.82225 0.81933 0.83748 0.87805 0.97546 0.98543 0.92978 0.72769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.12 9.26 -92.48 -0.86 -11.98 16 3 C 0.12 4.16 6.66 22.51 0.15 4.31 16 4 C -0.21 -5.60 9.04 22.36 0.20 -5.40 16 5 C -0.08 -1.94 10.04 22.25 0.22 -1.72 16 6 C -0.16 -4.96 10.04 22.28 0.22 -4.74 16 7 C -0.07 -2.77 7.98 22.25 0.18 -2.60 16 8 C -0.13 -5.16 4.41 -19.77 -0.09 -5.25 16 9 C -0.03 -1.26 2.42 -12.28 -0.03 -1.29 16 10 H 0.11 4.80 6.99 -2.39 -0.02 4.78 16 11 C 0.05 2.79 4.18 29.85 0.12 2.92 16 12 C -0.52 -29.30 8.05 25.60 0.21 -29.09 16 13 H 0.08 4.19 6.36 -2.91 -0.02 4.18 16 14 C 0.00 0.01 5.46 84.66 0.46 0.48 16 15 N -0.94 -56.93 13.29 21.45 0.28 -56.64 16 16 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 C 0.50 21.86 7.48 71.23 0.53 22.40 16 21 O -0.55 -24.66 15.87 21.97 0.35 -24.31 16 22 O -0.49 -19.23 11.02 -51.45 -0.57 -19.80 16 23 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 24 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 1.12 7.67 -2.39 -0.02 1.11 16 26 H 0.16 3.02 6.30 -2.91 -0.02 3.00 16 27 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 28 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.10 4.36 7.58 -2.91 -0.02 4.34 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.00 -0.22 7.57 -2.39 -0.02 -0.24 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.41 11.28 9.10 -74.05 -0.67 10.61 16 Total: -1.00 -73.13 285.81 4.99 -68.14 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.46 Total: 16.57 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 3.30 Total: -18.52 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.28 Total: -56.64 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -1.08 Total: -56.09 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -73.13 4.99 -68.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.862 kcal (2) G-P(sol) polarization free energy of solvation -73.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds