Wall clock time and date at job start Mon Mar 30 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35908 * 117.00155 * 2 1 4 4 C 1.38753 * 120.04828 * 0.02590 * 3 2 1 5 5 C 1.38125 * 119.94236 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05338 * 359.74425 * 5 4 3 7 7 C 1.38244 * 120.10883 * 0.50981 * 6 5 4 8 8 C 1.50705 * 119.97086 * 179.76454 * 7 6 5 9 9 H 1.09000 * 109.46749 * 179.72659 * 8 7 6 10 10 C 1.52996 * 109.47103 * 59.72487 * 8 7 6 11 11 C 1.50698 * 109.47407 * 175.00220 * 10 8 7 12 12 H 1.08004 * 119.99768 * 359.97438 * 11 10 8 13 13 C 1.37869 * 120.00293 * 180.02562 * 11 10 8 14 14 N 1.31513 * 120.00434 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 120.00018 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.46935 * 90.00249 * 15 13 11 17 17 H 1.48498 * 109.46961 * 210.00217 * 15 13 11 18 18 H 1.48503 * 109.46991 * 330.00182 * 15 13 11 19 19 C 1.50706 * 109.47164 * 299.72359 * 8 7 6 20 20 O 1.20825 * 119.99859 * 119.99456 * 19 8 7 21 21 O 1.34224 * 120.00295 * 300.00415 * 19 8 7 22 22 C 1.38166 * 120.05923 * 359.49135 * 7 6 5 23 23 H 1.09005 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47226 * 299.99370 * 1 2 3 25 25 H 1.08994 * 109.47665 * 60.00003 * 1 2 3 26 26 H 1.08004 * 120.03297 * 359.97438 * 4 3 2 27 27 H 1.07994 * 119.97392 * 180.02562 * 5 4 3 28 28 H 1.07996 * 119.94327 * 180.27687 * 6 5 4 29 29 H 1.08999 * 109.47181 * 295.00339 * 10 8 7 30 30 H 1.08999 * 109.47126 * 54.99719 * 10 8 7 31 31 H 0.97002 * 120.00606 * 179.97438 * 14 13 11 32 32 H 0.96700 * 117.00196 * 179.97438 * 21 19 8 33 33 H 1.07995 * 120.03001 * 180.27365 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9206 3.6048 0.0011 6 6 3.3017 3.6759 0.0064 7 6 4.0558 2.5172 0.0006 8 6 5.5607 2.5983 0.0011 9 1 5.9787 1.5917 0.0009 10 6 6.0307 3.3456 1.2506 11 6 7.5361 3.3204 1.3146 12 1 8.1011 2.8208 0.5415 13 6 8.1921 3.9340 2.3605 14 7 9.5059 3.9115 2.4166 15 14 7.2149 4.7974 3.6981 16 1 6.9043 3.8339 4.7844 17 1 8.0141 5.9220 4.2473 18 1 5.9493 5.3228 3.1256 19 6 6.0244 3.3351 -1.2291 20 8 6.6651 4.3534 -1.1178 21 8 5.7257 2.8601 -2.4484 22 6 3.4310 1.2849 0.0000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.2126 2.3203 0.0005 27 1 1.3338 4.5113 0.0019 28 1 3.7920 4.6381 0.0113 29 1 5.6862 4.3788 1.2072 30 1 5.6212 2.8632 2.1381 31 1 9.9674 4.3436 3.1523 32 1 6.0445 3.3674 -3.2075 33 1 4.0206 0.3801 -0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084487513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:13 Heat of formation + Delta-G solvation = -107.624936 kcal Electronic energy + Delta-G solvation = -18041.758452 eV Core-core repulsion = 15032.829719 eV Total energy + Delta-G solvation = -3008.928733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.28316 -39.48324 -37.49904 -35.54716 -33.93983 -32.16412 -30.60182 -29.15905 -27.38419 -26.11861 -22.62379 -22.35912 -21.67658 -19.52014 -18.00848 -17.19956 -16.71573 -16.27575 -15.98254 -15.75742 -15.39079 -15.01584 -14.15718 -13.87165 -13.50838 -13.09688 -12.90523 -12.55582 -12.49500 -12.06097 -11.68273 -11.55897 -11.21715 -11.10520 -10.88197 -10.70008 -10.47541 -10.10604 -9.75799 -9.75324 -9.20836 -8.61848 -8.47869 -8.07281 -5.98042 -3.94788 1.43458 1.58990 2.96414 3.27095 3.34534 3.42038 3.45784 3.65531 3.98919 4.49994 4.81299 4.89602 5.01386 5.04328 5.21493 5.32031 5.36415 5.50266 5.52479 5.68214 5.82576 5.96242 6.14450 6.35052 6.43376 6.56138 6.77884 6.85187 7.01937 7.15353 7.25964 7.44865 7.75776 8.52422 8.63967 9.02763 9.62507 11.15807 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023979 B = 0.006520 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.405243 B = 4293.689588 C = 4815.187048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.215 4.215 5 C -0.080 4.080 6 C -0.147 4.147 7 C -0.025 4.025 8 C -0.026 4.026 9 H 0.111 0.889 10 C 0.004 3.996 11 C -0.506 4.506 12 H 0.070 0.930 13 C 0.070 3.930 14 N -0.903 5.903 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.481 3.519 20 O -0.477 6.477 21 O -0.528 6.528 22 C -0.138 4.138 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.398 0.602 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.323 -4.681 -6.370 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.078 3.922 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.165 4.165 7 C -0.025 4.025 8 C -0.045 4.045 9 H 0.129 0.871 10 C -0.033 4.033 11 C -0.544 4.544 12 H 0.088 0.912 13 C -0.131 4.131 14 N -0.542 5.542 15 Si 0.703 3.297 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.189 1.189 19 C 0.321 3.679 20 O -0.360 6.360 21 O -0.340 6.340 22 C -0.156 4.156 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.255 0.745 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.040 -4.736 -5.874 19.554 hybrid contribution -0.385 0.986 0.266 1.091 sum -18.424 -3.750 -5.607 19.620 Atomic orbital electron populations 1.23001 0.78829 1.03602 1.01188 1.86064 1.21018 1.27147 1.89006 1.18930 0.92176 0.83954 0.97126 1.21140 0.99595 0.92470 1.10155 1.20854 0.94349 0.96864 0.97784 1.21045 0.93736 0.98546 1.03152 1.19542 0.94631 0.92431 0.95919 1.20155 0.90061 1.02170 0.92163 0.87106 1.19614 0.98206 0.95564 0.89892 1.20877 0.88658 1.35452 1.09398 0.91152 1.24894 0.94702 0.95670 0.97817 1.69896 1.07187 1.44860 1.32242 0.86849 0.80696 0.79817 0.82376 1.20293 1.21330 1.18947 1.23299 0.76840 0.83954 0.83798 1.90762 1.34856 1.23958 1.86466 1.84587 1.74863 1.57509 1.17027 1.20316 0.91189 0.98171 1.05945 0.88498 0.92814 0.92842 0.85847 0.85918 0.85698 0.95146 0.95248 0.92787 0.74499 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.13 10.50 -19.45 -0.20 -4.34 16 3 C 0.12 1.76 6.69 -39.22 -0.26 1.50 16 4 C -0.21 -2.75 9.04 -39.43 -0.36 -3.10 16 5 C -0.08 -1.09 10.04 -39.60 -0.40 -1.48 16 6 C -0.15 -2.38 8.86 -39.56 -0.35 -2.73 16 7 C -0.02 -0.43 4.71 -104.64 -0.49 -0.92 16 8 C -0.03 -0.53 2.43 -92.92 -0.23 -0.75 16 9 H 0.11 2.11 7.87 -51.93 -0.41 1.70 16 10 C 0.00 0.11 2.91 -27.89 -0.08 0.02 16 11 C -0.51 -14.52 8.30 -34.44 -0.29 -14.81 16 12 H 0.07 2.19 7.85 -52.48 -0.41 1.77 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -28.37 13.96 55.43 0.77 -27.59 16 15 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 19 C 0.48 9.71 6.92 36.01 0.25 9.96 16 20 O -0.48 -11.46 15.74 -18.75 -0.30 -11.75 16 21 O -0.53 -8.47 13.34 -39.24 -0.52 -8.99 16 22 C -0.14 -2.17 9.61 -39.43 -0.38 -2.55 16 23 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.12 1.22 6.30 -52.48 -0.33 0.89 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.13 2.09 7.62 -52.49 -0.40 1.69 16 29 H 0.03 0.75 6.42 -51.93 -0.33 0.42 16 30 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.40 4.56 9.10 45.56 0.41 4.98 16 33 H 0.13 1.96 7.94 -52.49 -0.42 1.54 16 LS Contribution 287.06 15.07 4.33 4.33 Total: -1.00 -34.77 287.06 -5.37 -40.14 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.09 Total: 2.45 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.69 Total: -11.65 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 0.77 Total: -27.59 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.02 Total: -25.08 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.77 -5.37 -40.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.488 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds