Wall clock time and date at job start Mon Mar 30 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35908 * 117.00155 * 2 1 4 4 C 1.38753 * 120.04828 * 0.02590 * 3 2 1 5 5 C 1.38125 * 119.94236 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05338 * 359.74425 * 5 4 3 7 7 C 1.38244 * 120.10883 * 0.50981 * 6 5 4 8 8 C 1.50705 * 119.97086 * 179.76454 * 7 6 5 9 9 H 1.09000 * 109.46749 * 179.72659 * 8 7 6 10 10 C 1.52996 * 109.47103 * 59.72487 * 8 7 6 11 11 C 1.50698 * 109.47407 * 175.00220 * 10 8 7 12 12 H 1.08004 * 119.99768 * 359.97438 * 11 10 8 13 13 C 1.37869 * 120.00293 * 180.02562 * 11 10 8 14 14 N 1.31513 * 120.00434 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 120.00018 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.46935 * 90.00249 * 15 13 11 17 17 H 1.48498 * 109.46961 * 210.00217 * 15 13 11 18 18 H 1.48503 * 109.46991 * 330.00182 * 15 13 11 19 19 C 1.50706 * 109.47164 * 299.72359 * 8 7 6 20 20 O 1.20825 * 119.99859 * 119.99456 * 19 8 7 21 21 O 1.34224 * 120.00295 * 300.00415 * 19 8 7 22 22 C 1.38166 * 120.05923 * 359.49135 * 7 6 5 23 23 H 1.09005 * 109.47087 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47226 * 299.99370 * 1 2 3 25 25 H 1.08994 * 109.47665 * 60.00003 * 1 2 3 26 26 H 1.08004 * 120.03297 * 359.97438 * 4 3 2 27 27 H 1.07994 * 119.97392 * 180.02562 * 5 4 3 28 28 H 1.07996 * 119.94327 * 180.27687 * 6 5 4 29 29 H 1.08999 * 109.47181 * 295.00339 * 10 8 7 30 30 H 1.08999 * 109.47126 * 54.99719 * 10 8 7 31 31 H 0.97002 * 120.00606 * 179.97438 * 14 13 11 32 32 H 0.96700 * 117.00196 * 179.97438 * 21 19 8 33 33 H 1.07995 * 120.03001 * 180.27365 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9206 3.6048 0.0011 6 6 3.3017 3.6759 0.0064 7 6 4.0558 2.5172 0.0006 8 6 5.5607 2.5983 0.0011 9 1 5.9787 1.5917 0.0009 10 6 6.0307 3.3456 1.2506 11 6 7.5361 3.3204 1.3146 12 1 8.1011 2.8208 0.5415 13 6 8.1921 3.9340 2.3605 14 7 9.5059 3.9115 2.4166 15 14 7.2149 4.7974 3.6981 16 1 6.9043 3.8339 4.7844 17 1 8.0141 5.9220 4.2473 18 1 5.9493 5.3228 3.1256 19 6 6.0244 3.3351 -1.2291 20 8 6.6651 4.3534 -1.1178 21 8 5.7257 2.8601 -2.4484 22 6 3.4310 1.2849 0.0000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.2126 2.3203 0.0005 27 1 1.3338 4.5113 0.0019 28 1 3.7920 4.6381 0.0113 29 1 5.6862 4.3788 1.2072 30 1 5.6212 2.8632 2.1381 31 1 9.9674 4.3436 3.1523 32 1 6.0445 3.3674 -3.2075 33 1 4.0206 0.3801 -0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084487513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:13 Heat of formation + Delta-G solvation = -132.022509 kcal Electronic energy + Delta-G solvation = -18042.816411 eV Core-core repulsion = 15032.829719 eV Total energy + Delta-G solvation = -3009.986691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.60021 -40.76912 -38.61469 -37.08468 -35.67082 -34.09982 -31.76111 -30.63619 -28.30658 -27.66619 -24.38121 -23.53729 -23.02413 -21.01249 -19.41392 -18.89258 -18.39426 -17.61762 -17.09451 -16.76881 -16.57486 -16.47865 -16.11320 -15.09322 -14.88414 -14.48885 -14.34523 -14.19742 -13.76817 -13.43625 -13.14125 -12.86973 -12.72584 -12.41588 -12.38787 -12.13262 -11.87234 -11.77193 -11.67311 -11.47299 -11.28818 -10.72787 -9.80345 -9.15207 -8.25314 -6.26827 0.29888 0.47885 1.34921 1.37404 1.38151 1.49166 2.21348 2.37982 2.42133 2.81285 3.10982 3.67634 3.87199 4.09260 4.18998 4.26487 4.35691 4.40168 4.46772 4.57066 4.71536 4.76107 4.80202 5.05605 5.12657 5.27649 5.31661 5.45744 5.61416 5.65301 5.69979 5.79229 6.23776 6.49493 6.73799 7.16218 7.34072 8.92228 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.023979 B = 0.006520 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.405243 B = 4293.689588 C = 4815.187048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.123 3.877 4 C -0.204 4.204 5 C -0.073 4.073 6 C -0.166 4.166 7 C -0.040 4.040 8 C -0.026 4.026 9 H 0.113 0.887 10 C 0.011 3.989 11 C -0.508 4.508 12 H 0.028 0.972 13 C 0.004 3.996 14 N -0.953 5.953 15 Si 0.944 3.056 16 H -0.260 1.260 17 H -0.286 1.286 18 H -0.249 1.249 19 C 0.489 3.511 20 O -0.526 6.526 21 O -0.512 6.512 22 C -0.152 4.152 23 H 0.118 0.882 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.160 0.840 27 H 0.154 0.846 28 H 0.112 0.888 29 H 0.024 0.976 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.420 0.580 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.130 -4.863 -6.130 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.077 3.923 4 C -0.222 4.222 5 C -0.091 4.091 6 C -0.184 4.184 7 C -0.040 4.040 8 C -0.045 4.045 9 H 0.131 0.869 10 C -0.026 4.026 11 C -0.546 4.546 12 H 0.047 0.953 13 C -0.192 4.192 14 N -0.595 5.595 15 Si 0.767 3.233 16 H -0.185 1.185 17 H -0.211 1.211 18 H -0.173 1.173 19 C 0.331 3.669 20 O -0.413 6.413 21 O -0.325 6.325 22 C -0.171 4.171 23 H 0.136 0.864 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.177 0.823 27 H 0.172 0.828 28 H 0.130 0.870 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.281 0.719 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.883 -4.950 -5.674 23.143 hybrid contribution 0.719 0.919 0.041 1.168 sum -21.164 -4.031 -5.633 22.269 Atomic orbital electron populations 1.23371 0.76267 1.05609 1.02450 1.86054 1.23650 1.26549 1.88666 1.19001 0.91787 0.85145 0.96333 1.21528 1.01351 0.91392 1.07922 1.21175 0.93219 0.98569 0.96101 1.21075 0.95202 0.97521 1.04650 1.19232 0.92517 0.93663 0.98575 1.19956 0.92659 1.01309 0.90575 0.86939 1.19440 0.94769 0.95912 0.92464 1.21163 0.91232 1.34268 1.07912 0.95321 1.25884 0.95749 0.96740 1.00789 1.70059 1.09249 1.46597 1.33578 0.85757 0.79503 0.78790 0.79255 1.18481 1.21150 1.17275 1.23347 0.75553 0.83036 0.84949 1.90743 1.37160 1.26116 1.87316 1.84515 1.74152 1.57226 1.16635 1.20348 0.92462 0.97585 1.06675 0.86397 0.91570 0.91384 0.82260 0.82802 0.87034 0.95779 0.94211 0.92659 0.71920 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.68 10.50 -92.51 -0.97 -8.65 16 3 C 0.12 3.16 6.69 22.51 0.15 3.31 16 4 C -0.20 -4.36 9.04 22.37 0.20 -4.16 16 5 C -0.07 -1.71 10.04 22.26 0.22 -1.49 16 6 C -0.17 -5.15 8.86 22.28 0.20 -4.95 16 7 C -0.04 -1.34 4.71 -19.88 -0.09 -1.43 16 8 C -0.03 -1.05 2.43 -12.28 -0.03 -1.08 16 9 H 0.11 4.42 7.87 -2.39 -0.02 4.40 16 10 C 0.01 0.55 2.91 29.85 0.09 0.64 16 11 C -0.51 -30.19 8.30 25.60 0.21 -29.98 16 12 H 0.03 1.88 7.85 -2.91 -0.02 1.86 16 13 C 0.00 0.27 5.47 84.65 0.46 0.73 16 14 N -0.95 -62.03 13.96 21.44 0.30 -61.73 16 15 Si 0.94 45.82 27.47 68.60 1.88 47.70 16 16 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 18 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 19 C 0.49 20.12 6.92 71.24 0.49 20.61 16 20 O -0.53 -26.14 15.74 21.97 0.35 -25.79 16 21 O -0.51 -16.15 13.34 -51.35 -0.69 -16.83 16 22 C -0.15 -4.61 9.61 22.36 0.21 -4.39 16 23 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.07 0.68 7.66 -2.39 -0.02 0.67 16 25 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.16 2.23 6.30 -2.91 -0.02 2.21 16 27 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.11 3.69 7.62 -2.91 -0.02 3.67 16 29 H 0.02 1.19 6.42 -2.39 -0.02 1.18 16 30 H 0.04 1.83 7.57 -2.39 -0.02 1.81 16 31 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 32 H 0.42 9.22 9.10 -74.06 -0.67 8.55 16 33 H 0.13 3.87 7.94 -2.91 -0.02 3.85 16 Total: -1.00 -77.82 287.06 4.51 -73.32 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.40 Total: 12.85 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 3.23 Total: -20.86 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.30 Total: -61.73 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -1.31 Total: -51.28 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.70 kcal Total: -77.82 4.51 -73.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.705 kcal (2) G-P(sol) polarization free energy of solvation -77.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds