Wall clock time and date at job start Mon Mar 30 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 116.99968 * 2 1 4 4 C 1.38750 * 120.05615 * 0.25416 * 3 2 1 5 5 C 1.38128 * 119.94092 * 180.27538 * 4 3 2 6 6 C 1.38285 * 120.05610 * 359.72263 * 5 4 3 7 7 C 1.38245 * 120.11243 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05350 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.02439 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47269 * 300.00141 * 9 8 7 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 9 8 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 9 8 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47438 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47045 * 120.00577 * 15 13 11 18 18 H 1.48501 * 109.46950 * 240.00369 * 15 13 11 19 19 C 1.52997 * 109.47212 * 60.00232 * 9 8 7 20 20 C 1.50705 * 109.47390 * 64.99632 * 19 9 8 21 21 O 1.20827 * 119.99283 * 0.02562 * 20 19 9 22 22 O 1.34224 * 120.00486 * 180.02562 * 20 19 9 23 23 H 1.08994 * 109.46971 * 299.99780 * 1 2 3 24 24 H 1.08998 * 109.47126 * 60.00185 * 1 2 3 25 25 H 1.09001 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.02963 * 0.02562 * 4 3 2 27 27 H 1.08006 * 119.96709 * 179.74823 * 5 4 3 28 28 H 1.08005 * 119.94241 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.97054 * 180.02562 * 7 6 5 30 30 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 31 31 H 1.09001 * 109.47630 * 184.99895 * 19 9 8 32 32 H 1.09004 * 109.47346 * 305.00026 * 19 9 8 33 33 H 0.96695 * 117.00163 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0004 6 6 3.3020 3.6757 -0.0057 7 6 4.0560 2.5170 -0.0058 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 -0.0007 10 1 3.5910 -0.8433 0.0039 11 6 5.1176 -0.0140 -1.2349 12 1 5.0756 0.7966 -1.9473 13 6 5.9625 -1.0813 -1.4540 14 7 6.0141 -2.0681 -0.5861 15 14 7.0340 -1.1257 -2.9835 16 1 6.7914 0.0951 -3.7935 17 1 8.4635 -1.1788 -2.5851 18 1 6.6992 -2.3284 -3.7877 19 6 5.1419 -0.0086 1.2447 20 6 4.2777 -0.0964 2.4762 21 8 3.0747 -0.1314 2.3686 22 8 4.8442 -0.1357 3.6924 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3203 0.0099 27 1 1.3340 4.5114 -0.0004 28 1 3.7923 4.6380 -0.0098 29 1 5.1344 2.5751 -0.0095 30 1 6.6082 -2.8192 -0.7404 31 1 5.8003 -0.8762 1.2003 32 1 5.7416 0.9008 1.2858 33 1 4.2490 -0.1924 4.4523 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084487519.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:19 Heat of formation + Delta-G solvation = -110.533856 kcal Electronic energy + Delta-G solvation = -18770.251962 eV Core-core repulsion = 15761.197089 eV Total energy + Delta-G solvation = -3009.054873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73525 -38.99977 -36.72836 -35.36987 -34.23641 -31.52509 -29.39626 -28.90307 -26.70053 -26.02242 -23.09115 -21.41017 -21.04200 -19.30921 -17.31664 -17.24576 -16.29173 -15.63090 -15.39631 -15.01125 -14.92849 -14.60968 -14.35695 -13.69216 -13.10445 -12.71889 -12.39172 -12.25726 -11.86630 -11.49435 -11.17189 -11.00526 -10.97465 -10.85970 -10.59524 -10.47300 -10.32555 -10.19201 -9.61898 -9.38632 -9.18667 -8.43785 -8.04676 -7.26895 -6.10103 -4.16590 2.09846 2.23227 3.22796 3.26935 3.35616 3.40064 4.02867 4.07477 4.36784 4.58552 5.23975 5.37295 5.50679 5.56277 5.59215 5.75134 5.86496 6.06368 6.19954 6.32056 6.41857 6.50862 6.73701 6.91634 7.02580 7.06505 7.23235 7.28462 7.49394 7.59772 7.86000 7.98715 8.24245 8.28014 8.80250 8.91950 9.48780 10.96076 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.009287 C = 0.008020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.269174 B = 3014.129612 C = 3490.344343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.292 6.292 3 C 0.143 3.857 4 C -0.222 4.222 5 C -0.108 4.108 6 C -0.168 4.168 7 C -0.086 4.086 8 C -0.063 4.063 9 C 0.096 3.904 10 H 0.057 0.943 11 C -0.504 4.504 12 H 0.063 0.937 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.103 4.103 20 C 0.466 3.534 21 O -0.515 6.515 22 O -0.532 6.532 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.264 0.736 31 H 0.135 0.865 32 H 0.078 0.922 33 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 6.175 3.756 9.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.204 6.204 3 C 0.097 3.903 4 C -0.241 4.241 5 C -0.127 4.127 6 C -0.186 4.186 7 C -0.104 4.104 8 C -0.063 4.063 9 C 0.078 3.922 10 H 0.076 0.924 11 C -0.542 4.542 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.141 4.141 20 C 0.310 3.690 21 O -0.403 6.403 22 O -0.343 6.343 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.550 5.818 3.389 8.725 hybrid contribution -0.143 0.053 -0.216 0.264 sum -5.692 5.871 3.173 8.771 Atomic orbital electron populations 1.22892 0.80527 1.02931 1.00117 1.86241 1.19292 1.26709 1.88161 1.18844 0.92202 0.83614 0.95608 1.21057 0.99062 0.92802 1.11137 1.20629 0.94592 0.96205 1.01242 1.20903 0.93826 0.97940 1.05980 1.20911 0.99984 0.91090 0.98428 1.19871 0.90442 0.97305 0.98711 1.17594 0.92302 0.90846 0.91460 0.92448 1.21185 1.22041 1.05788 1.05208 0.91837 1.25006 0.97041 0.95230 0.96712 1.69810 1.38486 1.09251 1.35397 0.86456 0.80018 0.78149 0.82983 1.19630 1.20916 1.20964 1.21878 0.99470 1.05616 0.87115 1.24828 0.88937 0.70831 0.84382 1.90654 1.16790 1.45984 1.86871 1.84671 1.45837 1.86371 1.17450 0.93587 0.93661 0.89105 0.86754 0.87240 0.87119 0.85602 0.92628 0.84746 0.90399 0.75462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.48 16 2 O -0.29 -6.31 8.76 -22.92 -0.20 -6.51 16 3 C 0.14 3.09 5.78 -39.22 -0.23 2.86 16 4 C -0.22 -4.07 9.04 -39.43 -0.36 -4.43 16 5 C -0.11 -1.84 10.04 -39.60 -0.40 -2.24 16 6 C -0.17 -2.96 10.04 -39.56 -0.40 -3.35 16 7 C -0.09 -1.74 8.65 -39.61 -0.34 -2.08 16 8 C -0.06 -1.43 3.69 -104.47 -0.39 -1.81 16 9 C 0.10 2.42 1.57 -92.92 -0.15 2.27 16 10 H 0.06 1.64 6.81 -51.93 -0.35 1.29 16 11 C -0.50 -13.34 8.24 -34.44 -0.28 -13.62 16 12 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 13 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 14 N -0.89 -24.32 11.29 55.43 0.63 -23.69 16 15 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.10 -2.38 5.02 -27.88 -0.14 -2.52 16 20 C 0.47 10.08 8.08 36.01 0.29 10.37 16 21 O -0.52 -12.11 14.55 -21.50 -0.31 -12.42 16 22 O -0.53 -9.45 13.42 -39.24 -0.53 -9.97 16 23 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 24 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.11 1.78 6.30 -52.49 -0.33 1.45 16 27 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 29 H 0.13 2.43 7.54 -52.49 -0.40 2.04 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.14 3.38 5.95 -51.93 -0.31 3.07 16 32 H 0.08 1.67 7.23 -51.93 -0.38 1.30 16 33 H 0.39 4.98 9.10 45.56 0.41 5.39 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -30.78 282.57 -5.61 -36.39 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -2.95 Total: 7.92 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -1.49 Total: -11.55 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.63 Total: -23.69 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.04 Total: -28.90 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.78 -5.61 -36.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487519.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.142 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds