Wall clock time and date at job start Mon Mar 30 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 116.99968 * 2 1 4 4 C 1.38750 * 120.05615 * 0.25416 * 3 2 1 5 5 C 1.38128 * 119.94092 * 180.27538 * 4 3 2 6 6 C 1.38285 * 120.05610 * 359.72263 * 5 4 3 7 7 C 1.38245 * 120.11243 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05350 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.02439 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47269 * 300.00141 * 9 8 7 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 9 8 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 9 8 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47438 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47045 * 120.00577 * 15 13 11 18 18 H 1.48501 * 109.46950 * 240.00369 * 15 13 11 19 19 C 1.52997 * 109.47212 * 60.00232 * 9 8 7 20 20 C 1.50705 * 109.47390 * 64.99632 * 19 9 8 21 21 O 1.20827 * 119.99283 * 0.02562 * 20 19 9 22 22 O 1.34224 * 120.00486 * 180.02562 * 20 19 9 23 23 H 1.08994 * 109.46971 * 299.99780 * 1 2 3 24 24 H 1.08998 * 109.47126 * 60.00185 * 1 2 3 25 25 H 1.09001 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.02963 * 0.02562 * 4 3 2 27 27 H 1.08006 * 119.96709 * 179.74823 * 5 4 3 28 28 H 1.08005 * 119.94241 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.97054 * 180.02562 * 7 6 5 30 30 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 31 31 H 1.09001 * 109.47630 * 184.99895 * 19 9 8 32 32 H 1.09004 * 109.47346 * 305.00026 * 19 9 8 33 33 H 0.96695 * 117.00163 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0004 6 6 3.3020 3.6757 -0.0057 7 6 4.0560 2.5170 -0.0058 8 6 3.4311 1.2848 0.0000 9 6 4.2537 0.0221 -0.0007 10 1 3.5910 -0.8433 0.0039 11 6 5.1176 -0.0140 -1.2349 12 1 5.0756 0.7966 -1.9473 13 6 5.9625 -1.0813 -1.4540 14 7 6.0141 -2.0681 -0.5861 15 14 7.0340 -1.1257 -2.9835 16 1 6.7914 0.0951 -3.7935 17 1 8.4635 -1.1788 -2.5851 18 1 6.6992 -2.3284 -3.7877 19 6 5.1419 -0.0086 1.2447 20 6 4.2777 -0.0964 2.4762 21 8 3.0747 -0.1314 2.3686 22 8 4.8442 -0.1357 3.6924 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3203 0.0099 27 1 1.3340 4.5114 -0.0004 28 1 3.7923 4.6380 -0.0098 29 1 5.1344 2.5751 -0.0095 30 1 6.6082 -2.8192 -0.7404 31 1 5.8003 -0.8762 1.2003 32 1 5.7416 0.9008 1.2858 33 1 4.2490 -0.1924 4.4523 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084487519.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:19 Heat of formation + Delta-G solvation = -130.206539 kcal Electronic energy + Delta-G solvation = -18771.105034 eV Core-core repulsion = 15761.197089 eV Total energy + Delta-G solvation = -3009.907945 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.32619 -40.56769 -38.20965 -36.97749 -36.05440 -33.38470 -30.83328 -30.49867 -28.17806 -27.77248 -24.84832 -22.89384 -22.58644 -21.02224 -18.95775 -18.75976 -18.16677 -17.23732 -17.15523 -16.51417 -16.41909 -16.28948 -15.92857 -15.10769 -14.59694 -14.41796 -14.05314 -13.88155 -13.45744 -12.94433 -12.90309 -12.70075 -12.54924 -12.49831 -12.26575 -12.16296 -11.90771 -11.80448 -11.42375 -11.10796 -11.04642 -10.45628 -9.52793 -8.77596 -8.10589 -6.25036 0.63574 0.78166 1.43664 1.46612 1.50585 1.58065 2.41337 2.50986 2.70585 3.08538 3.21828 4.08937 4.11736 4.36268 4.40693 4.43213 4.56097 4.66567 4.69839 4.70707 4.79922 4.95623 5.05962 5.31954 5.46144 5.50123 5.65182 5.75729 5.77431 5.92273 6.09460 6.13795 6.33546 6.79567 6.85109 7.26447 7.43666 8.94291 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.009287 C = 0.008020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.269174 B = 3014.129612 C = 3490.344343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.331 6.331 3 C 0.118 3.882 4 C -0.222 4.222 5 C -0.100 4.100 6 C -0.165 4.165 7 C -0.099 4.099 8 C -0.099 4.099 9 C 0.105 3.895 10 H 0.009 0.991 11 C -0.518 4.518 12 H 0.057 0.943 13 C 0.018 3.982 14 N -0.917 5.917 15 Si 0.958 3.042 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.285 1.285 19 C -0.099 4.099 20 C 0.474 3.526 21 O -0.535 6.535 22 O -0.520 6.520 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.142 0.858 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.124 0.876 30 H 0.265 0.735 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.252 8.269 3.803 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.245 6.245 3 C 0.072 3.928 4 C -0.241 4.241 5 C -0.118 4.118 6 C -0.183 4.183 7 C -0.117 4.117 8 C -0.099 4.099 9 C 0.086 3.914 10 H 0.027 0.973 11 C -0.556 4.556 12 H 0.075 0.925 13 C -0.181 4.181 14 N -0.557 5.557 15 Si 0.783 3.217 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.211 1.211 19 C -0.137 4.137 20 C 0.318 3.682 21 O -0.425 6.425 22 O -0.333 6.333 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.123 0.877 26 H 0.160 0.840 27 H 0.170 0.830 28 H 0.163 0.837 29 H 0.142 0.858 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -6.155 7.920 3.465 10.612 hybrid contribution -0.038 -0.573 -0.156 0.595 sum -6.194 7.347 3.309 10.163 Atomic orbital electron populations 1.23178 0.77954 1.04480 1.01539 1.86181 1.22207 1.27612 1.88479 1.19110 0.92270 0.84690 0.96689 1.21415 1.00432 0.92215 1.10000 1.21150 0.94701 0.97185 0.98717 1.21282 0.94334 0.98281 1.04388 1.21017 1.00271 0.91372 0.99018 1.19804 0.91269 0.96975 1.01885 1.17269 0.91676 0.90676 0.91743 0.97331 1.21406 1.22450 1.05750 1.05953 0.92495 1.25729 0.98181 0.94874 0.99350 1.69937 1.39146 1.09711 1.36880 0.85502 0.78627 0.77930 0.79599 1.19208 1.19990 1.21103 1.21615 0.99120 1.05051 0.87906 1.24342 0.88210 0.70549 0.85111 1.90648 1.17472 1.46924 1.87421 1.84574 1.46027 1.85582 1.17161 0.92343 0.91800 0.87725 0.84017 0.83000 0.83667 0.85790 0.92571 0.87065 0.89201 0.72492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.81 113.37 1.11 1.82 16 2 O -0.33 -14.65 8.76 -89.07 -0.78 -15.43 16 3 C 0.12 5.09 5.78 22.50 0.13 5.22 16 4 C -0.22 -7.63 9.04 22.37 0.20 -7.43 16 5 C -0.10 -3.00 10.04 22.25 0.22 -2.78 16 6 C -0.16 -5.31 10.04 22.28 0.22 -5.08 16 7 C -0.10 -3.94 8.65 22.25 0.19 -3.75 16 8 C -0.10 -4.56 3.69 -19.77 -0.07 -4.64 16 9 C 0.10 5.49 1.57 -12.29 -0.02 5.47 16 10 H 0.01 0.52 6.81 -2.39 -0.02 0.50 16 11 C -0.52 -28.32 8.24 25.60 0.21 -28.11 16 12 H 0.06 3.10 7.60 -2.91 -0.02 3.08 16 13 C 0.02 0.95 5.29 84.65 0.45 1.40 16 14 N -0.92 -51.74 11.29 21.45 0.24 -51.50 16 15 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 C -0.10 -4.73 5.02 29.85 0.15 -4.58 16 20 C 0.47 20.71 8.08 71.24 0.58 21.29 16 21 O -0.54 -25.57 14.55 24.59 0.36 -25.21 16 22 O -0.52 -17.94 13.42 -51.36 -0.69 -18.63 16 23 H 0.06 1.59 7.65 -2.39 -0.02 1.57 16 24 H 0.06 1.65 7.67 -2.39 -0.02 1.64 16 25 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.14 3.95 6.30 -2.91 -0.02 3.93 16 27 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 28 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 29 H 0.12 4.80 7.54 -2.91 -0.02 4.78 16 30 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.11 5.85 5.95 -2.39 -0.01 5.83 16 32 H 0.09 3.96 7.23 -2.39 -0.02 3.94 16 33 H 0.42 9.84 9.10 -74.06 -0.67 9.17 16 Total: -1.00 -68.77 282.57 5.00 -63.77 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.46 Total: 23.30 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 3.38 Total: -21.17 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.24 Total: -51.50 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -1.11 Total: -59.27 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -68.77 5.00 -63.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487519.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.436 kcal (2) G-P(sol) polarization free energy of solvation -68.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds