Wall clock time and date at job start Mon Mar 30 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00129 * 2 1 4 4 C 1.38759 * 120.05350 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94094 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05768 * 359.97408 * 5 4 3 7 7 C 1.38245 * 120.10982 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.96768 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.46766 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47431 * 299.99853 * 8 7 6 11 11 H 1.08002 * 119.99784 * 0.02562 * 10 8 7 12 12 C 1.37871 * 120.00114 * 180.02562 * 10 8 7 13 13 N 1.31517 * 120.00009 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00003 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47629 * 90.00235 * 14 12 10 16 16 H 1.48505 * 109.47245 * 210.00043 * 14 12 10 17 17 H 1.48503 * 109.47256 * 329.99853 * 14 12 10 18 18 C 1.52999 * 109.47303 * 60.00293 * 8 7 6 19 19 C 1.50705 * 109.47187 * 64.99500 * 18 8 7 20 20 O 1.20821 * 119.99804 * 0.02562 * 19 18 8 21 21 O 1.34230 * 120.00017 * 180.02562 * 19 18 8 22 22 C 1.38164 * 120.05645 * 0.02562 * 7 6 5 23 23 H 1.08997 * 109.46967 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47177 * 299.99686 * 1 2 3 25 25 H 1.09002 * 109.46778 * 59.99753 * 1 2 3 26 26 H 1.07998 * 120.02743 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.97091 * 180.02562 * 5 4 3 28 28 H 1.07995 * 119.94278 * 180.27458 * 6 5 4 29 29 H 0.97001 * 119.99891 * 179.97438 * 13 12 10 30 30 H 1.08995 * 109.47191 * 185.00100 * 18 8 7 31 31 H 1.09000 * 109.47062 * 304.99489 * 18 8 7 32 32 H 0.96690 * 117.00119 * 180.02562 * 21 19 18 33 33 H 1.08001 * 120.02528 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6758 0.0016 7 6 4.0560 2.5170 0.0011 8 6 5.5608 2.5982 0.0011 9 1 5.9789 1.5915 0.0011 10 6 6.0242 3.3351 -1.2290 11 1 5.3013 3.7078 -1.9396 12 6 7.3710 3.5334 -1.4474 13 7 8.2514 3.0791 -0.5824 14 14 7.9454 4.4475 -2.9718 15 1 8.0331 5.8998 -2.6747 16 1 9.2823 3.9436 -3.3769 17 1 6.9775 4.2258 -4.0760 18 6 6.0313 3.3452 1.2507 19 6 5.6751 2.5460 2.4777 20 8 5.1039 1.4874 2.3643 21 8 5.9923 3.0103 3.6965 22 6 3.4311 1.2848 -0.0005 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2128 2.3203 0.0005 27 1 1.3340 4.5114 0.0019 28 1 3.7923 4.6380 0.0065 29 1 9.1989 3.2184 -0.7362 30 1 7.1118 3.4818 1.2070 31 1 5.5437 4.3189 1.2970 32 1 5.7436 2.4624 4.4534 33 1 4.0207 0.3799 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084487524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:23 Heat of formation + Delta-G solvation = -114.360062 kcal Electronic energy + Delta-G solvation = -18305.632834 eV Core-core repulsion = 15296.412044 eV Total energy + Delta-G solvation = -3009.220790 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.74384 -39.20840 -37.18209 -35.35657 -34.11123 -31.46081 -30.07466 -28.54729 -26.97261 -26.11700 -22.98079 -21.86062 -20.98364 -19.41064 -17.39397 -17.17393 -16.25582 -15.62600 -15.40558 -15.37122 -15.18551 -14.98524 -14.53887 -13.60899 -13.14308 -12.75658 -12.47456 -12.27709 -12.00671 -11.78412 -11.27349 -11.15321 -11.07064 -10.75517 -10.60641 -10.51325 -10.39704 -10.26593 -9.71863 -9.53912 -9.29849 -8.52084 -7.93239 -7.52108 -6.17578 -4.24741 2.11556 2.17335 3.14966 3.24525 3.32331 3.36250 3.70047 3.99116 4.32019 4.57205 5.17043 5.19299 5.30619 5.42329 5.47388 5.59978 5.94119 6.08307 6.14565 6.22952 6.35144 6.58510 6.64522 6.82568 6.95386 7.10052 7.18894 7.29483 7.37042 7.50917 7.81897 7.89526 7.97685 8.18374 8.72486 8.83450 9.41621 10.88850 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.019248 B = 0.007824 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.311307 B = 3577.649553 C = 4428.162450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.322 6.322 3 C 0.112 3.888 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.152 4.152 7 C 0.004 3.996 8 C 0.091 3.909 9 H 0.049 0.951 10 C -0.508 4.508 11 H 0.066 0.934 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.104 4.104 19 C 0.469 3.531 20 O -0.521 6.521 21 O -0.530 6.530 22 C -0.129 4.129 23 H 0.092 0.908 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.266 0.734 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.391 0.609 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.788 -0.052 3.735 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.068 3.932 4 C -0.251 4.251 5 C -0.113 4.113 6 C -0.170 4.170 7 C 0.004 3.996 8 C 0.073 3.927 9 H 0.067 0.933 10 C -0.546 4.546 11 H 0.084 0.916 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.141 4.141 19 C 0.313 3.687 20 O -0.409 6.409 21 O -0.342 6.342 22 C -0.148 4.148 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.140 0.860 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.247 0.753 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.554 -0.303 3.371 10.136 hybrid contribution -0.103 0.239 -0.203 0.330 sum -9.657 -0.064 3.168 10.164 Atomic orbital electron populations 1.22908 0.79637 1.02978 1.00854 1.86050 1.20377 1.27811 1.89410 1.19033 0.92447 0.83495 0.98199 1.20930 0.98808 0.92693 1.12648 1.20790 0.94812 0.96221 0.99451 1.20996 0.92905 0.98944 1.04148 1.20252 0.97919 0.90973 0.90457 1.17755 0.85209 0.97849 0.91911 0.93329 1.21106 0.91902 1.36137 1.05405 0.91627 1.25015 0.96643 0.95471 0.96824 1.69794 1.01928 1.45614 1.35596 0.86463 0.78114 0.79788 0.82963 1.20470 1.21115 1.19734 1.21870 1.07408 0.97916 0.86951 1.24806 0.74071 0.85451 0.84398 1.90641 1.39394 1.23967 1.86914 1.84661 1.77420 1.54614 1.17466 1.20346 0.90310 0.98867 1.05275 0.88994 0.93232 0.93160 0.86820 0.86942 0.85969 0.92431 0.84571 0.90058 0.75273 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.32 -5.72 10.50 -19.41 -0.20 -5.92 16 3 C 0.11 2.19 6.69 -39.21 -0.26 1.93 16 4 C -0.23 -4.02 9.04 -39.43 -0.36 -4.38 16 5 C -0.09 -1.65 10.04 -39.60 -0.40 -2.05 16 6 C -0.15 -3.03 8.65 -39.56 -0.34 -3.38 16 7 C 0.00 0.09 3.69 -104.65 -0.39 -0.29 16 8 C 0.09 2.22 1.61 -92.93 -0.15 2.07 16 9 H 0.05 1.32 7.69 -51.92 -0.40 0.92 16 10 C -0.51 -13.09 8.24 -34.44 -0.28 -13.37 16 11 H 0.07 1.69 7.60 -52.49 -0.40 1.29 16 12 C 0.06 1.61 5.29 -17.82 -0.09 1.52 16 13 N -0.89 -23.77 11.30 55.43 0.63 -23.14 16 14 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C -0.10 -2.33 5.02 -27.88 -0.14 -2.47 16 19 C 0.47 9.86 8.08 36.01 0.29 10.15 16 20 O -0.52 -12.02 14.95 -18.75 -0.28 -12.30 16 21 O -0.53 -9.17 13.42 -39.26 -0.53 -9.70 16 22 C -0.13 -2.84 8.58 -39.43 -0.34 -3.18 16 23 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 26 H 0.11 1.61 6.30 -52.49 -0.33 1.28 16 27 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 28 H 0.12 2.34 7.53 -52.49 -0.40 1.95 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.14 3.32 5.95 -51.93 -0.31 3.01 16 31 H 0.08 1.70 7.22 -51.93 -0.37 1.32 16 32 H 0.39 4.84 9.10 45.56 0.41 5.26 16 33 H 0.12 2.78 7.94 -52.49 -0.42 2.36 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -29.82 284.94 -5.57 -35.38 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -2.99 Total: 8.24 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.47 Total: -12.06 kcal Atomic # 7 Polarization: -23.77 SS G_CDS: 0.63 Total: -23.14 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.01 Total: -27.92 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.82 -5.57 -35.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.976 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds