Wall clock time and date at job start Mon Mar 30 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00380 * 2 1 4 4 C 1.38757 * 120.05610 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.94828 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05224 * 359.74621 * 5 4 3 7 7 C 1.38242 * 120.11543 * 0.51080 * 6 5 4 8 8 C 1.50700 * 119.97666 * 179.76473 * 7 6 5 9 9 H 1.08997 * 109.47141 * 179.71821 * 8 7 6 10 10 C 1.50702 * 109.46850 * 59.72611 * 8 7 6 11 11 H 1.07998 * 119.99422 * 269.58169 * 10 8 7 12 12 C 1.37872 * 120.00372 * 89.86042 * 10 8 7 13 13 N 1.31519 * 120.00070 * 6.67168 * 12 10 8 14 14 Si 1.86805 * 120.00174 * 186.67003 * 12 10 8 15 15 H 1.48493 * 109.46826 * 90.00058 * 14 12 10 16 16 H 1.48493 * 109.46929 * 209.99991 * 14 12 10 17 17 H 1.48499 * 109.46822 * 329.99788 * 14 12 10 18 18 C 1.52998 * 109.47221 * 299.72498 * 8 7 6 19 19 C 1.50694 * 109.47004 * 185.95094 * 18 8 7 20 20 O 1.20825 * 120.00255 * 5.97126 * 19 18 8 21 21 O 1.34238 * 120.00035 * 185.97102 * 19 18 8 22 22 C 1.38175 * 120.05034 * 359.48582 * 7 6 5 23 23 H 1.09004 * 109.46764 * 60.00077 * 1 2 3 24 24 H 1.08997 * 109.47769 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47042 * 300.00685 * 1 2 3 26 26 H 1.08005 * 120.02300 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.97746 * 180.02562 * 5 4 3 28 28 H 1.08003 * 119.94424 * 180.27463 * 6 5 4 29 29 H 0.96996 * 120.00170 * 185.05418 * 13 12 10 30 30 H 1.09006 * 109.46719 * 305.94814 * 18 8 7 31 31 H 1.08993 * 109.47075 * 65.94509 * 18 8 7 32 32 H 0.96695 * 116.99940 * 179.97438 * 21 19 18 33 33 H 1.07999 * 120.02323 * 180.27366 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6756 0.0064 7 6 4.0561 2.5170 0.0005 8 6 5.5609 2.5980 0.0009 9 1 5.9789 1.5914 0.0009 10 6 6.0239 3.3340 1.2318 11 1 6.1529 4.4059 1.2034 12 6 6.2884 2.6384 2.3924 13 7 6.2643 1.3234 2.3909 14 14 6.6811 3.5635 3.9671 15 1 5.4235 3.8332 4.7093 16 1 7.5873 2.7432 4.8102 17 1 7.3445 4.8494 3.6333 18 6 6.0318 3.3460 -1.2479 19 6 7.5362 3.3005 -1.3233 20 8 8.1612 2.6392 -0.5284 21 8 8.1819 3.9946 -2.2737 22 6 3.4311 1.2847 0.0000 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2129 2.3203 0.0014 27 1 1.3342 4.5114 0.0019 28 1 3.7924 4.6379 0.0113 29 1 6.3776 0.8353 3.2214 30 1 5.6091 2.8741 -2.1350 31 1 5.7017 4.3835 -1.1961 32 1 9.1469 3.9347 -2.2819 33 1 4.0207 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084487526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:25 Heat of formation + Delta-G solvation = -111.916775 kcal Electronic energy + Delta-G solvation = -18144.290007 eV Core-core repulsion = 15135.175166 eV Total energy + Delta-G solvation = -3009.114841 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58701 -39.21737 -37.13113 -35.35027 -33.83806 -31.49890 -30.07568 -28.70885 -26.90905 -25.81117 -23.06475 -21.77612 -20.87630 -19.37510 -17.43168 -17.03816 -16.32483 -15.69517 -15.51120 -15.30499 -14.99568 -14.85401 -14.44506 -13.44997 -13.08606 -12.73316 -12.46689 -12.22052 -12.01370 -11.88785 -11.52069 -11.01335 -10.83882 -10.76142 -10.62439 -10.57634 -10.47688 -10.04842 -9.59995 -9.43789 -9.17792 -8.40005 -7.87880 -7.44961 -6.00471 -4.02705 2.18844 2.25273 3.19838 3.34093 3.40617 3.42106 3.73889 3.91916 4.45632 4.62694 5.24242 5.34101 5.35585 5.50399 5.54398 5.66186 5.97444 6.02545 6.12543 6.15169 6.20353 6.37734 6.52019 6.82091 6.86528 7.04286 7.22067 7.28800 7.40108 7.60773 7.80893 7.96439 8.05134 8.27144 8.82195 8.98788 9.59933 11.08927 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.008084 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.340838 B = 3462.645404 C = 4315.942999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.323 6.323 3 C 0.114 3.886 4 C -0.237 4.237 5 C -0.094 4.094 6 C -0.147 4.147 7 C 0.011 3.989 8 C 0.073 3.927 9 H 0.079 0.921 10 C -0.505 4.505 11 H 0.055 0.945 12 C 0.078 3.922 13 N -0.873 5.873 14 Si 0.886 3.114 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.094 4.094 19 C 0.470 3.530 20 O -0.478 6.478 21 O -0.538 6.538 22 C -0.145 4.145 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.261 0.739 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.395 0.605 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 2.115 -7.220 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.237 6.237 3 C 0.070 3.930 4 C -0.256 4.256 5 C -0.112 4.112 6 C -0.166 4.166 7 C 0.011 3.989 8 C 0.054 3.946 9 H 0.097 0.903 10 C -0.542 4.542 11 H 0.073 0.927 12 C -0.126 4.126 13 N -0.509 5.509 14 Si 0.714 3.286 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.132 4.132 19 C 0.311 3.689 20 O -0.362 6.362 21 O -0.351 6.351 22 C -0.163 4.163 23 H 0.067 0.933 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.252 0.748 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.376 1.572 -6.856 10.192 hybrid contribution 0.426 0.600 1.166 1.378 sum -6.950 2.171 -5.691 9.241 Atomic orbital electron populations 1.22897 0.79724 1.02906 1.00827 1.86052 1.20309 1.27912 1.89404 1.19060 0.92486 0.83427 0.98022 1.20888 0.98709 0.92714 1.13242 1.20766 0.94864 0.96121 0.99466 1.20896 0.92775 0.98773 1.04124 1.20486 0.98106 0.90763 0.89579 1.17945 0.86203 0.99605 0.90812 0.90268 1.20755 1.44965 0.93081 0.95408 0.92726 1.24861 0.94064 0.94677 0.99037 1.69911 1.48548 1.05727 1.26748 0.86686 0.78166 0.79955 0.83803 1.20681 1.21252 1.19925 1.21515 0.86392 1.03701 1.01629 1.23693 0.92301 0.75920 0.76984 1.90765 1.68590 1.38519 1.38313 1.84584 1.26275 1.69120 1.55124 1.20414 0.90291 0.99037 1.06587 0.93252 0.89068 0.93208 0.86986 0.87152 0.86464 0.92873 0.90233 0.89370 0.74810 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.32 -5.77 10.50 -19.41 -0.20 -5.97 16 3 C 0.11 2.23 6.69 -39.22 -0.26 1.97 16 4 C -0.24 -4.11 9.04 -39.43 -0.36 -4.47 16 5 C -0.09 -1.64 10.04 -39.61 -0.40 -2.03 16 6 C -0.15 -2.90 8.87 -39.56 -0.35 -3.25 16 7 C 0.01 0.25 4.77 -104.64 -0.50 -0.25 16 8 C 0.07 1.73 1.70 -92.92 -0.16 1.57 16 9 H 0.08 2.15 6.79 -51.93 -0.35 1.79 16 10 C -0.50 -13.37 6.73 -34.44 -0.23 -13.60 16 11 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 12 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 13 N -0.87 -25.43 12.84 55.43 0.71 -24.72 16 14 Si 0.89 21.75 29.55 -169.99 -5.02 16.73 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 18 C -0.09 -1.85 5.00 -27.89 -0.14 -1.99 16 19 C 0.47 9.53 8.02 36.00 0.29 9.82 16 20 O -0.48 -11.75 15.91 -18.75 -0.30 -12.05 16 21 O -0.54 -8.58 13.42 -39.28 -0.53 -9.11 16 22 C -0.14 -3.16 9.61 -39.43 -0.38 -3.54 16 23 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 26 H 0.11 1.61 6.30 -52.48 -0.33 1.28 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.12 2.18 7.66 -52.48 -0.40 1.78 16 29 H 0.26 7.33 8.32 -40.82 -0.34 6.99 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.59 7.61 -51.93 -0.40 1.19 16 32 H 0.40 4.56 9.10 45.56 0.41 4.98 16 33 H 0.12 2.84 7.94 -52.49 -0.42 2.42 16 LS Contribution 290.47 15.07 4.38 4.38 Total: -1.00 -32.38 290.47 -5.65 -38.03 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.09 Total: 5.03 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.59 Total: -12.31 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.71 Total: -24.72 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.03 Total: -27.13 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.38 -5.65 -38.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.891 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds