Wall clock time and date at job start Mon Mar 30 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00380 * 2 1 4 4 C 1.38757 * 120.05610 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.94828 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05224 * 359.74621 * 5 4 3 7 7 C 1.38242 * 120.11543 * 0.51080 * 6 5 4 8 8 C 1.50700 * 119.97666 * 179.76473 * 7 6 5 9 9 H 1.08997 * 109.47141 * 179.71821 * 8 7 6 10 10 C 1.50702 * 109.46850 * 59.72611 * 8 7 6 11 11 H 1.07998 * 119.99422 * 269.58169 * 10 8 7 12 12 C 1.37872 * 120.00372 * 89.86042 * 10 8 7 13 13 N 1.31519 * 120.00070 * 6.67168 * 12 10 8 14 14 Si 1.86805 * 120.00174 * 186.67003 * 12 10 8 15 15 H 1.48493 * 109.46826 * 90.00058 * 14 12 10 16 16 H 1.48493 * 109.46929 * 209.99991 * 14 12 10 17 17 H 1.48499 * 109.46822 * 329.99788 * 14 12 10 18 18 C 1.52998 * 109.47221 * 299.72498 * 8 7 6 19 19 C 1.50694 * 109.47004 * 185.95094 * 18 8 7 20 20 O 1.20825 * 120.00255 * 5.97126 * 19 18 8 21 21 O 1.34238 * 120.00035 * 185.97102 * 19 18 8 22 22 C 1.38175 * 120.05034 * 359.48582 * 7 6 5 23 23 H 1.09004 * 109.46764 * 60.00077 * 1 2 3 24 24 H 1.08997 * 109.47769 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47042 * 300.00685 * 1 2 3 26 26 H 1.08005 * 120.02300 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.97746 * 180.02562 * 5 4 3 28 28 H 1.08003 * 119.94424 * 180.27463 * 6 5 4 29 29 H 0.96996 * 120.00170 * 185.05418 * 13 12 10 30 30 H 1.09006 * 109.46719 * 305.94814 * 18 8 7 31 31 H 1.08993 * 109.47075 * 65.94509 * 18 8 7 32 32 H 0.96695 * 116.99940 * 179.97438 * 21 19 18 33 33 H 1.07999 * 120.02323 * 180.27366 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6756 0.0064 7 6 4.0561 2.5170 0.0005 8 6 5.5609 2.5980 0.0009 9 1 5.9789 1.5914 0.0009 10 6 6.0239 3.3340 1.2318 11 1 6.1529 4.4059 1.2034 12 6 6.2884 2.6384 2.3924 13 7 6.2643 1.3234 2.3909 14 14 6.6811 3.5635 3.9671 15 1 5.4235 3.8332 4.7093 16 1 7.5873 2.7432 4.8102 17 1 7.3445 4.8494 3.6333 18 6 6.0318 3.3460 -1.2479 19 6 7.5362 3.3005 -1.3233 20 8 8.1612 2.6392 -0.5284 21 8 8.1819 3.9946 -2.2737 22 6 3.4311 1.2847 0.0000 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2129 2.3203 0.0014 27 1 1.3342 4.5114 0.0019 28 1 3.7924 4.6379 0.0113 29 1 6.3776 0.8353 3.2214 30 1 5.6091 2.8741 -2.1350 31 1 5.7017 4.3835 -1.1961 32 1 9.1469 3.9347 -2.2819 33 1 4.0207 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084487526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:24 Heat of formation + Delta-G solvation = -133.610776 kcal Electronic energy + Delta-G solvation = -18145.230729 eV Core-core repulsion = 15135.175166 eV Total energy + Delta-G solvation = -3010.055564 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10941 -40.70801 -38.58670 -36.87579 -35.60227 -33.41414 -31.52574 -30.19382 -28.05993 -27.68215 -24.81837 -23.24728 -22.35399 -20.98722 -19.01217 -18.70149 -18.00370 -17.23634 -16.90752 -16.55261 -16.50411 -16.45878 -16.36960 -14.91597 -14.60721 -14.34407 -13.97214 -13.80557 -13.63856 -13.33530 -12.92527 -12.73770 -12.55515 -12.51903 -12.23784 -12.19669 -11.89977 -11.56103 -11.30834 -11.24108 -11.04079 -10.48124 -9.44843 -8.90517 -8.07300 -6.13619 0.69417 0.76045 1.38985 1.40046 1.47942 1.58958 2.41342 2.44819 2.57419 3.08461 3.31092 4.09363 4.20091 4.36833 4.42125 4.45434 4.50141 4.61174 4.67598 4.74048 4.77595 4.82417 5.00278 5.28194 5.36484 5.54539 5.62824 5.71738 5.79159 5.87867 6.06171 6.20194 6.33239 6.68195 6.96498 7.34066 7.50882 9.01758 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.008084 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.340838 B = 3462.645404 C = 4315.942999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.347 6.347 3 C 0.111 3.889 4 C -0.228 4.228 5 C -0.082 4.082 6 C -0.158 4.158 7 C -0.006 4.006 8 C 0.074 3.926 9 H 0.031 0.969 10 C -0.500 4.500 11 H 0.057 0.943 12 C 0.021 3.979 13 N -0.913 5.913 14 Si 0.939 3.061 15 H -0.274 1.274 16 H -0.293 1.293 17 H -0.266 1.266 18 C -0.093 4.093 19 C 0.478 3.522 20 O -0.532 6.532 21 O -0.519 6.519 22 C -0.177 4.177 23 H 0.069 0.931 24 H 0.116 0.884 25 H 0.060 0.940 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.128 0.872 29 H 0.255 0.745 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.418 0.582 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.631 4.295 -8.017 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.262 6.262 3 C 0.066 3.934 4 C -0.246 4.246 5 C -0.100 4.100 6 C -0.177 4.177 7 C -0.007 4.007 8 C 0.056 3.944 9 H 0.049 0.951 10 C -0.538 4.538 11 H 0.075 0.925 12 C -0.178 4.178 13 N -0.552 5.552 14 Si 0.766 3.234 15 H -0.200 1.200 16 H -0.219 1.219 17 H -0.190 1.190 18 C -0.130 4.130 19 C 0.321 3.679 20 O -0.420 6.420 21 O -0.333 6.333 22 C -0.196 4.196 23 H 0.087 0.913 24 H 0.134 0.866 25 H 0.078 0.922 26 H 0.168 0.832 27 H 0.170 0.830 28 H 0.146 0.854 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.278 0.722 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.707 3.787 -7.689 12.950 hybrid contribution 1.066 -0.092 1.270 1.661 sum -8.641 3.695 -6.419 11.381 Atomic orbital electron populations 1.23296 0.76658 1.05214 1.02197 1.86025 1.23488 1.27478 1.89161 1.19111 0.91803 0.84997 0.97472 1.21306 1.00522 0.91648 1.11142 1.21215 0.94088 0.97780 0.96874 1.21038 0.94009 0.98028 1.04589 1.20265 0.97020 0.91860 0.91547 1.17732 0.87722 0.97165 0.91826 0.95088 1.21095 1.43364 0.93126 0.96179 0.92512 1.25608 0.94853 0.95298 1.02087 1.70078 1.51165 1.07136 1.26811 0.85840 0.78001 0.78939 0.80659 1.19955 1.21932 1.19008 1.21447 0.86293 1.04579 1.00698 1.23779 0.92639 0.74975 0.76538 1.90764 1.69652 1.40914 1.40669 1.84507 1.28243 1.67496 1.53070 1.20318 0.91863 0.98091 1.09331 0.91281 0.86602 0.92171 0.83171 0.82952 0.85424 0.93554 0.87748 0.87058 0.72232 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.35 -12.11 10.50 -92.38 -0.97 -13.08 16 3 C 0.11 4.24 6.69 22.51 0.15 4.39 16 4 C -0.23 -7.11 9.04 22.36 0.20 -6.91 16 5 C -0.08 -2.53 10.04 22.25 0.22 -2.30 16 6 C -0.16 -5.91 8.87 22.28 0.20 -5.71 16 7 C -0.01 -0.28 4.77 -19.88 -0.09 -0.37 16 8 C 0.07 3.63 1.70 -12.29 -0.02 3.61 16 9 H 0.03 1.80 6.79 -2.39 -0.02 1.78 16 10 C -0.50 -26.92 6.73 25.60 0.17 -26.75 16 11 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 12 C 0.02 1.21 5.45 84.65 0.46 1.67 16 13 N -0.91 -56.00 12.84 21.45 0.28 -55.72 16 14 Si 0.94 45.39 29.55 68.60 2.03 47.42 16 15 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 18 C -0.09 -3.58 5.00 29.85 0.15 -3.43 16 19 C 0.48 19.23 8.02 71.23 0.57 19.80 16 20 O -0.53 -26.92 15.91 21.97 0.35 -26.57 16 21 O -0.52 -15.53 13.42 -51.49 -0.69 -16.22 16 22 C -0.18 -8.04 9.61 22.37 0.21 -7.82 16 23 H 0.07 1.24 7.66 -2.38 -0.02 1.22 16 24 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.06 1.19 7.66 -2.39 -0.02 1.17 16 26 H 0.15 3.51 6.30 -2.91 -0.02 3.49 16 27 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 28 H 0.13 4.40 7.66 -2.91 -0.02 4.38 16 29 H 0.26 15.13 8.32 -92.71 -0.77 14.36 16 30 H 0.10 3.49 8.14 -2.38 -0.02 3.47 16 31 H 0.11 3.78 7.61 -2.39 -0.02 3.76 16 32 H 0.42 8.78 9.10 -74.06 -0.67 8.11 16 33 H 0.09 4.64 7.94 -2.91 -0.02 4.61 16 Total: -1.00 -73.89 290.47 4.79 -69.10 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.46 Total: 17.34 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 3.34 Total: -22.27 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.28 Total: -55.72 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -1.31 Total: -55.87 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.89 4.79 -69.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.508 kcal (2) G-P(sol) polarization free energy of solvation -73.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds