Wall clock time and date at job start Mon Mar 30 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46762 * 359.97438 * 7 6 5 9 9 C 1.50694 * 109.47566 * 119.99841 * 7 6 5 10 10 H 1.08005 * 119.99842 * 0.02562 * 9 7 6 11 11 C 1.37882 * 120.00318 * 179.97438 * 9 7 6 12 12 N 1.31519 * 119.99698 * 0.02562 * 11 9 7 13 13 Si 1.86793 * 120.00066 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46996 * 60.00253 * 13 11 9 15 15 H 1.48500 * 109.47310 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47315 * 300.00640 * 13 11 9 17 17 C 1.52999 * 109.47143 * 240.00460 * 7 6 5 18 18 C 1.50699 * 109.47444 * 64.99490 * 17 7 6 19 19 O 1.20826 * 120.00021 * 0.02562 * 18 17 7 20 20 O 1.34233 * 120.00173 * 179.97438 * 18 17 7 21 21 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 22 22 C 1.38143 * 120.05412 * 359.97438 * 21 6 5 23 23 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 24 24 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 25 25 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 27 27 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 28 28 H 0.96992 * 119.99418 * 179.97438 * 12 11 9 29 29 H 1.09005 * 109.47349 * 184.99672 * 17 7 6 30 30 H 1.08999 * 109.47154 * 304.99197 * 17 7 6 31 31 H 0.96696 * 116.99857 * 179.97438 * 20 18 17 32 32 H 1.08001 * 119.97543 * 180.02562 * 21 6 5 33 33 H 1.08001 * 120.02739 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0668 4.8755 -0.0017 9 6 3.5819 5.7872 -1.2342 10 1 2.8976 5.3476 -1.9448 11 6 4.0848 7.0522 -1.4533 12 7 4.9177 7.5877 -0.5877 13 14 3.5830 8.0054 -2.9793 14 1 2.1108 8.1996 -2.9799 15 1 4.2573 9.3285 -2.9805 16 1 3.9825 7.2457 -4.1911 17 6 3.5746 5.8016 1.2455 18 6 4.0865 5.0943 2.4738 19 8 4.7163 4.0693 2.3623 20 8 3.8436 5.6037 3.6918 21 6 1.9212 3.6047 -0.0021 22 6 1.2916 2.3751 -0.0016 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 4.0208 0.3798 0.0016 27 1 5.1346 2.5749 0.0050 28 1 5.2717 8.4774 -0.7420 29 1 3.9981 6.8050 1.2010 30 1 2.4876 5.8678 1.2908 31 1 4.1918 5.1144 4.4496 32 1 1.3343 4.5113 -0.0038 33 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084487529.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:27 Heat of formation + Delta-G solvation = -114.622208 kcal Electronic energy + Delta-G solvation = -18240.026405 eV Core-core repulsion = 15230.794247 eV Total energy + Delta-G solvation = -3009.232158 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74893 -39.23571 -37.21800 -35.34624 -34.04519 -31.31911 -30.35322 -28.65644 -26.99340 -25.90035 -22.95673 -21.88895 -20.95711 -19.33295 -17.65972 -17.34923 -16.37987 -15.74104 -15.48415 -15.40583 -15.08142 -14.60567 -14.19110 -13.53831 -13.29680 -12.89075 -12.54781 -12.26742 -12.05439 -11.82313 -11.47164 -11.25315 -11.06123 -10.73150 -10.67130 -10.45663 -10.35500 -10.07702 -9.72510 -9.54598 -9.25175 -8.51556 -8.27187 -7.31272 -6.17123 -4.24535 2.06994 2.20077 3.13881 3.25376 3.30847 3.33685 3.65414 3.98597 4.31463 4.56936 5.16907 5.18317 5.28613 5.40794 5.53484 5.57737 5.93162 6.07779 6.16202 6.26384 6.36184 6.45495 6.69773 6.76456 6.96109 7.08856 7.22037 7.30471 7.39877 7.47860 7.80369 7.89056 7.95485 8.20303 8.71639 8.83285 9.41854 10.88799 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.007766 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.517849 B = 3604.788221 C = 4601.144493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.327 6.327 3 C 0.094 3.906 4 C -0.157 4.157 5 C -0.064 4.064 6 C -0.064 4.064 7 C 0.095 3.905 8 H 0.046 0.954 9 C -0.509 4.509 10 H 0.064 0.936 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.898 3.102 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.104 4.104 18 C 0.470 3.530 19 O -0.523 6.523 20 O -0.531 6.531 21 C -0.082 4.082 22 C -0.213 4.213 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.266 0.734 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.391 0.609 32 H 0.123 0.877 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.343 -7.076 3.757 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.241 6.241 3 C 0.050 3.950 4 C -0.175 4.175 5 C -0.083 4.083 6 C -0.065 4.065 7 C 0.077 3.923 8 H 0.065 0.935 9 C -0.546 4.546 10 H 0.082 0.918 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.726 3.274 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.142 4.142 18 C 0.314 3.686 19 O -0.411 6.411 20 O -0.342 6.342 21 C -0.100 4.100 22 C -0.232 4.232 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.076 0.924 29 H 0.153 0.847 30 H 0.097 0.903 31 H 0.247 0.753 32 H 0.141 0.859 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.135 -7.156 3.397 10.019 hybrid contribution -0.272 0.390 -0.222 0.525 sum -6.407 -6.765 3.175 9.844 Atomic orbital electron populations 1.22906 0.79489 1.02906 1.01075 1.85991 1.20519 1.27838 1.89781 1.18875 0.92293 0.83555 1.00275 1.20304 0.91057 0.98354 1.07816 1.20882 0.99804 0.90825 0.96741 1.20359 0.93117 0.96755 0.96232 1.17665 0.96519 0.86547 0.91579 0.93550 1.21107 1.28005 1.00075 1.05448 0.91828 1.25019 0.94596 0.97577 0.96756 1.69780 1.31025 1.16641 1.35532 0.86544 0.78781 0.78929 0.83174 1.20112 1.21185 1.20120 1.21890 1.01038 1.04185 0.87098 1.24812 0.76225 0.83159 0.84383 1.90616 1.38763 1.24757 1.86959 1.84668 1.74944 1.57095 1.17486 1.20860 0.94810 0.96289 0.98062 1.21088 0.99004 0.92702 1.10400 0.93149 0.93051 0.89054 0.86433 0.85947 0.92409 0.84684 0.90271 0.75287 0.85928 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.33 -5.32 10.50 -19.42 -0.20 -5.52 16 3 C 0.09 1.71 6.69 -39.22 -0.26 1.45 16 4 C -0.16 -2.97 9.99 -39.44 -0.39 -3.37 16 5 C -0.06 -1.34 8.63 -39.61 -0.34 -1.68 16 6 C -0.06 -1.41 3.70 -104.60 -0.39 -1.79 16 7 C 0.10 2.29 1.61 -92.93 -0.15 2.14 16 8 H 0.05 1.24 7.68 -51.92 -0.40 0.84 16 9 C -0.51 -13.02 8.24 -34.44 -0.28 -13.30 16 10 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 11 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 12 N -0.89 -23.68 11.29 55.43 0.63 -23.06 16 13 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 15 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 C -0.10 -2.32 5.02 -27.88 -0.14 -2.46 16 18 C 0.47 9.77 8.08 36.01 0.29 10.06 16 19 O -0.52 -11.79 14.95 -18.75 -0.28 -12.07 16 20 O -0.53 -9.10 13.42 -39.27 -0.53 -9.63 16 21 C -0.08 -1.63 8.64 -39.61 -0.34 -1.98 16 22 C -0.21 -3.81 9.04 -39.43 -0.36 -4.16 16 23 H 0.05 0.54 7.67 -51.93 -0.40 0.15 16 24 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 27 H 0.12 2.50 7.94 -52.49 -0.42 2.08 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.14 3.28 5.95 -51.93 -0.31 2.97 16 30 H 0.08 1.65 7.22 -51.93 -0.37 1.28 16 31 H 0.39 4.78 9.10 45.56 0.41 5.19 16 32 H 0.12 2.34 7.54 -52.49 -0.40 1.95 16 33 H 0.12 1.72 6.30 -52.49 -0.33 1.39 16 LS Contribution 284.92 15.07 4.29 4.29 Total: -1.00 -29.40 284.92 -5.57 -34.97 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.99 Total: 8.09 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.47 Total: -12.22 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.63 Total: -23.06 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -1.01 Total: -27.22 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.40 -5.57 -34.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487529.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.657 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds