Wall clock time and date at job start Mon Mar 30 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46762 * 359.97438 * 7 6 5 9 9 C 1.50694 * 109.47566 * 119.99841 * 7 6 5 10 10 H 1.08005 * 119.99842 * 0.02562 * 9 7 6 11 11 C 1.37882 * 120.00318 * 179.97438 * 9 7 6 12 12 N 1.31519 * 119.99698 * 0.02562 * 11 9 7 13 13 Si 1.86793 * 120.00066 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46996 * 60.00253 * 13 11 9 15 15 H 1.48500 * 109.47310 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47315 * 300.00640 * 13 11 9 17 17 C 1.52999 * 109.47143 * 240.00460 * 7 6 5 18 18 C 1.50699 * 109.47444 * 64.99490 * 17 7 6 19 19 O 1.20826 * 120.00021 * 0.02562 * 18 17 7 20 20 O 1.34233 * 120.00173 * 179.97438 * 18 17 7 21 21 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 22 22 C 1.38143 * 120.05412 * 359.97438 * 21 6 5 23 23 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 24 24 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 25 25 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 27 27 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 28 28 H 0.96992 * 119.99418 * 179.97438 * 12 11 9 29 29 H 1.09005 * 109.47349 * 184.99672 * 17 7 6 30 30 H 1.08999 * 109.47154 * 304.99197 * 17 7 6 31 31 H 0.96696 * 116.99857 * 179.97438 * 20 18 17 32 32 H 1.08001 * 119.97543 * 180.02562 * 21 6 5 33 33 H 1.08001 * 120.02739 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0668 4.8755 -0.0017 9 6 3.5819 5.7872 -1.2342 10 1 2.8976 5.3476 -1.9448 11 6 4.0848 7.0522 -1.4533 12 7 4.9177 7.5877 -0.5877 13 14 3.5830 8.0054 -2.9793 14 1 2.1108 8.1996 -2.9799 15 1 4.2573 9.3285 -2.9805 16 1 3.9825 7.2457 -4.1911 17 6 3.5746 5.8016 1.2455 18 6 4.0865 5.0943 2.4738 19 8 4.7163 4.0693 2.3623 20 8 3.8436 5.6037 3.6918 21 6 1.9212 3.6047 -0.0021 22 6 1.2916 2.3751 -0.0016 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 4.0208 0.3798 0.0016 27 1 5.1346 2.5749 0.0050 28 1 5.2717 8.4774 -0.7420 29 1 3.9981 6.8050 1.2010 30 1 2.4876 5.8678 1.2908 31 1 4.1918 5.1144 4.4496 32 1 1.3343 4.5113 -0.0038 33 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084487529.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:26 Heat of formation + Delta-G solvation = -132.800494 kcal Electronic energy + Delta-G solvation = -18240.814675 eV Core-core repulsion = 15230.794247 eV Total energy + Delta-G solvation = -3010.020427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.28461 -40.69972 -38.65583 -36.89491 -35.83575 -33.13923 -31.83112 -30.14025 -28.32458 -27.56457 -24.65863 -23.38778 -22.48158 -21.01004 -19.02036 -18.95246 -18.19677 -17.29332 -17.17900 -16.58086 -16.52575 -16.34045 -15.73208 -15.06773 -14.67993 -14.35364 -14.29174 -13.84980 -13.54767 -13.34008 -12.90539 -12.81877 -12.66907 -12.37809 -12.34658 -12.21751 -11.82112 -11.55902 -11.46041 -11.33315 -11.05491 -10.47739 -9.77026 -8.81489 -8.12131 -6.27008 0.56633 0.69317 1.46351 1.47730 1.49089 1.56024 2.40850 2.48233 2.50512 3.02166 3.20225 4.00908 4.07971 4.31215 4.41392 4.44676 4.55507 4.64118 4.67828 4.73456 4.76584 4.89693 5.01479 5.20454 5.41783 5.47332 5.54207 5.64530 5.76033 5.88967 5.97526 6.14258 6.30448 6.59727 6.81031 7.23669 7.42447 8.92108 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.007766 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.517849 B = 3604.788221 C = 4601.144493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.099 3.901 4 C -0.163 4.163 5 C -0.080 4.080 6 C -0.088 4.088 7 C 0.101 3.899 8 H 0.005 0.995 9 C -0.521 4.521 10 H 0.059 0.941 11 C 0.020 3.980 12 N -0.916 5.916 13 Si 0.957 3.043 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.278 1.278 17 C -0.100 4.100 18 C 0.477 3.523 19 O -0.543 6.543 20 O -0.519 6.519 21 C -0.089 4.089 22 C -0.206 4.206 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.121 0.879 26 H 0.134 0.866 27 H 0.111 0.889 28 H 0.266 0.734 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.416 0.584 32 H 0.127 0.873 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 -7.932 3.862 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.055 3.945 4 C -0.182 4.182 5 C -0.098 4.098 6 C -0.088 4.088 7 C 0.082 3.918 8 H 0.023 0.977 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.179 4.179 12 N -0.555 5.555 13 Si 0.782 3.218 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.203 1.203 17 C -0.138 4.138 18 C 0.322 3.678 19 O -0.434 6.434 20 O -0.332 6.332 21 C -0.107 4.107 22 C -0.224 4.224 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.140 0.860 26 H 0.152 0.848 27 H 0.129 0.871 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.277 0.723 32 H 0.145 0.855 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.228 -8.021 3.532 12.021 hybrid contribution 0.323 0.549 -0.183 0.662 sum -7.905 -7.472 3.349 11.382 Atomic orbital electron populations 1.23302 0.76791 1.05385 1.02023 1.85993 1.23247 1.26566 1.89296 1.18956 0.92175 0.84592 0.98819 1.20465 0.92098 0.98120 1.07498 1.20851 0.99427 0.91617 0.97945 1.20216 0.94170 0.95757 0.98666 1.17433 0.94187 0.88178 0.92004 0.97729 1.21334 1.27949 1.00458 1.06155 0.92235 1.25707 0.94587 0.98389 0.99237 1.69904 1.31846 1.16844 1.36931 0.85624 0.78851 0.77529 0.79767 1.19077 1.20955 1.20317 1.21628 1.01656 1.02774 0.87706 1.24345 0.75749 0.82580 0.85127 1.90614 1.39593 1.25642 1.87510 1.84571 1.74535 1.56926 1.17207 1.20936 0.93949 0.97536 0.98313 1.21364 1.00708 0.91560 1.08797 0.92075 0.92095 0.86036 0.84790 0.87115 0.92453 0.86805 0.88992 0.72341 0.85501 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -9.93 10.50 -92.40 -0.97 -10.90 16 3 C 0.10 3.41 6.69 22.50 0.15 3.56 16 4 C -0.16 -6.08 9.99 22.36 0.22 -5.85 16 5 C -0.08 -3.40 8.63 22.25 0.19 -3.21 16 6 C -0.09 -3.89 3.70 -19.85 -0.07 -3.97 16 7 C 0.10 4.99 1.61 -12.29 -0.02 4.97 16 8 H 0.00 0.26 7.68 -2.38 -0.02 0.24 16 9 C -0.52 -27.26 8.24 25.60 0.21 -27.05 16 10 H 0.06 3.09 7.60 -2.91 -0.02 3.06 16 11 C 0.02 1.05 5.29 84.66 0.45 1.50 16 12 N -0.92 -49.80 11.29 21.45 0.24 -49.56 16 13 Si 0.96 41.47 29.54 68.60 2.03 43.50 16 14 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 17 C -0.10 -4.53 5.02 29.85 0.15 -4.38 16 18 C 0.48 19.87 8.08 71.24 0.58 20.45 16 19 O -0.54 -24.82 14.95 21.96 0.33 -24.49 16 20 O -0.52 -17.06 13.42 -51.44 -0.69 -17.75 16 21 C -0.09 -3.47 8.64 22.25 0.19 -3.28 16 22 C -0.21 -6.85 9.04 22.37 0.20 -6.64 16 23 H 0.06 1.07 7.67 -2.39 -0.02 1.05 16 24 H 0.06 1.08 7.66 -2.38 -0.02 1.06 16 25 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.11 4.80 7.94 -2.91 -0.02 4.77 16 28 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.11 5.70 5.95 -2.38 -0.01 5.68 16 30 H 0.09 3.85 7.22 -2.39 -0.02 3.83 16 31 H 0.42 9.28 9.10 -74.06 -0.67 8.61 16 32 H 0.13 4.73 7.54 -2.91 -0.02 4.70 16 33 H 0.15 3.86 6.30 -2.91 -0.02 3.84 16 Total: -1.00 -63.61 284.92 4.76 -58.85 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.46 Total: 22.77 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 3.36 Total: -22.41 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.24 Total: -49.56 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -1.33 Total: -53.14 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -63.61 4.76 -58.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487529.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.952 kcal (2) G-P(sol) polarization free energy of solvation -63.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds