Wall clock time and date at job start Mon Mar 30 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99744 * 2 1 4 4 C 1.38732 * 120.05109 * 180.02562 * 3 2 1 5 5 C 1.38153 * 119.94119 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05610 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.94394 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47275 * 359.97438 * 7 6 5 9 9 C 1.50703 * 109.46972 * 240.00276 * 7 6 5 10 10 H 1.08007 * 119.99720 * 273.36790 * 9 7 6 11 11 C 1.37871 * 120.00176 * 93.36520 * 9 7 6 12 12 N 1.31515 * 120.00318 * 353.06670 * 11 9 7 13 13 Si 1.86809 * 120.00042 * 173.06758 * 11 9 7 14 14 H 1.48497 * 109.46878 * 60.00244 * 13 11 9 15 15 H 1.48501 * 109.47051 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46692 * 300.00040 * 13 11 9 17 17 C 1.52996 * 109.47231 * 120.00432 * 7 6 5 18 18 C 1.50707 * 109.47066 * 185.98656 * 17 7 6 19 19 O 1.20826 * 119.99502 * 3.51982 * 18 17 7 20 20 O 1.34222 * 120.00026 * 183.52176 * 18 17 7 21 21 C 1.38269 * 120.10803 * 0.27507 * 6 5 4 22 22 C 1.38148 * 120.05941 * 359.45931 * 21 6 5 23 23 H 1.08997 * 109.47128 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46750 * 300.00357 * 1 2 3 25 25 H 1.08990 * 109.46982 * 60.00055 * 1 2 3 26 26 H 1.07997 * 120.03244 * 359.94772 * 4 3 2 27 27 H 1.07997 * 119.97273 * 180.02562 * 5 4 3 28 28 H 0.97001 * 120.00304 * 185.02900 * 12 11 9 29 29 H 1.09001 * 109.47624 * 65.98531 * 17 7 6 30 30 H 1.09000 * 109.47097 * 305.97971 * 17 7 6 31 31 H 0.96694 * 117.00254 * 179.97438 * 20 18 17 32 32 H 1.07998 * 119.96677 * 179.69807 * 21 6 5 33 33 H 1.07995 * 120.03207 * 180.27509 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6759 -0.0016 7 6 3.9860 5.0186 -0.0028 8 1 5.0666 4.8758 -0.0026 9 6 3.5816 5.7895 1.2274 10 1 2.6842 6.3905 1.2172 11 6 4.3569 5.7275 2.3657 12 7 5.3713 4.8927 2.4258 13 14 3.9665 6.8293 3.8229 14 1 2.5931 6.5401 4.3081 15 1 4.9415 6.5722 4.9131 16 1 4.0550 8.2517 3.4056 17 6 3.5744 5.7996 -1.2523 18 6 4.3685 7.0782 -1.3298 19 8 5.2248 7.3081 -0.5089 20 8 4.1244 7.9614 -2.3106 21 6 1.9211 3.6048 0.0041 22 6 1.2915 2.3751 -0.0009 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 4.0209 0.3800 -0.0001 27 1 5.1345 2.5751 -0.0019 28 1 5.8718 4.7961 3.2511 29 1 2.5114 6.0348 -1.2002 30 1 3.7701 5.1963 -2.1388 31 1 4.6589 8.7671 -2.3188 32 1 1.3342 4.5114 0.0086 33 1 0.2129 2.3201 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084487530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:28 Heat of formation + Delta-G solvation = -111.976040 kcal Electronic energy + Delta-G solvation = -18079.716974 eV Core-core repulsion = 15070.599563 eV Total energy + Delta-G solvation = -3009.117411 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.58704 -39.23808 -37.15325 -35.36206 -33.72590 -31.44040 -30.26291 -28.78114 -26.93422 -25.61971 -22.98478 -21.86385 -20.81221 -19.30254 -17.58411 -17.20486 -16.62549 -15.91413 -15.33599 -15.24565 -14.88270 -14.49841 -14.18891 -13.40582 -13.20743 -12.82757 -12.71200 -12.19210 -12.05143 -11.89941 -11.53921 -11.01775 -10.94600 -10.78336 -10.60965 -10.43876 -10.31796 -10.17120 -9.58428 -9.42940 -9.08598 -8.42106 -8.18945 -7.21993 -5.98860 -4.01627 2.16297 2.30404 3.17376 3.34945 3.39236 3.42344 3.73512 3.88220 4.45531 4.64856 5.24304 5.34122 5.35823 5.48405 5.61071 5.64045 5.97309 6.07683 6.09236 6.16264 6.28142 6.37712 6.48704 6.74092 6.85731 7.04325 7.22898 7.35590 7.45260 7.56925 7.79007 7.96283 8.04367 8.29518 8.80067 8.98876 9.61286 11.09623 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.007521 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.835497 B = 3722.218798 C = 4586.079577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.328 6.328 3 C 0.088 3.912 4 C -0.154 4.154 5 C -0.077 4.077 6 C -0.053 4.053 7 C 0.080 3.920 8 H 0.074 0.926 9 C -0.506 4.506 10 H 0.052 0.948 11 C 0.080 3.920 12 N -0.879 5.879 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.096 4.096 18 C 0.470 3.530 19 O -0.480 6.480 20 O -0.539 6.539 21 C -0.079 4.079 22 C -0.211 4.211 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.262 0.738 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.395 0.605 32 H 0.117 0.883 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 -3.573 -7.373 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.242 6.242 3 C 0.044 3.956 4 C -0.173 4.173 5 C -0.095 4.095 6 C -0.054 4.054 7 C 0.061 3.939 8 H 0.092 0.908 9 C -0.543 4.543 10 H 0.070 0.930 11 C -0.124 4.124 12 N -0.515 5.515 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.134 4.134 18 C 0.311 3.689 19 O -0.364 6.364 20 O -0.351 6.351 21 C -0.098 4.098 22 C -0.230 4.230 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.134 0.866 27 H 0.142 0.858 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.252 0.748 32 H 0.135 0.865 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.423 -4.086 -7.004 10.344 hybrid contribution -0.197 1.242 1.102 1.672 sum -6.620 -2.845 -5.901 9.314 Atomic orbital electron populations 1.22884 0.79636 1.02787 1.01005 1.85987 1.20396 1.27945 1.89904 1.18851 0.92291 0.83489 1.00940 1.20307 0.91009 0.98344 1.07610 1.20920 0.99920 0.90803 0.97872 1.20526 0.93013 0.96730 0.95120 1.17847 0.98411 0.87170 0.90484 0.90777 1.20731 1.08924 1.27795 0.96895 0.92951 1.24838 0.94183 0.94863 0.98550 1.69861 1.19593 1.35296 1.26775 0.86727 0.77865 0.81649 0.82141 1.20443 1.21300 1.20242 1.21593 0.99538 0.90383 1.01892 1.23750 0.82629 0.85271 0.77247 1.90753 1.31546 1.75944 1.38156 1.84586 1.64210 1.33249 1.53069 1.20749 0.94825 0.95949 0.98237 1.21062 0.98846 0.92784 1.10334 0.89173 0.93134 0.93204 0.86595 0.85811 0.92841 0.89493 0.90326 0.74834 0.86507 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.33 -5.42 10.50 -19.44 -0.20 -5.62 16 3 C 0.09 1.62 6.69 -39.22 -0.26 1.36 16 4 C -0.15 -2.94 9.99 -39.43 -0.39 -3.34 16 5 C -0.08 -1.60 9.66 -39.60 -0.38 -1.98 16 6 C -0.05 -1.15 4.77 -104.60 -0.50 -1.65 16 7 C 0.08 1.86 1.65 -92.93 -0.15 1.71 16 8 H 0.07 1.97 6.92 -51.93 -0.36 1.61 16 9 C -0.51 -13.33 6.66 -34.44 -0.23 -13.56 16 10 H 0.05 1.36 7.82 -52.48 -0.41 0.95 16 11 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 12 N -0.88 -25.24 12.89 55.43 0.71 -24.52 16 13 Si 0.89 21.82 29.55 -169.99 -5.02 16.79 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C -0.10 -1.86 5.00 -27.88 -0.14 -2.00 16 18 C 0.47 9.43 8.05 36.01 0.29 9.72 16 19 O -0.48 -11.68 15.85 -18.75 -0.30 -11.97 16 20 O -0.54 -8.50 13.42 -39.24 -0.53 -9.03 16 21 C -0.08 -1.56 8.86 -39.60 -0.35 -1.91 16 22 C -0.21 -3.78 9.04 -39.43 -0.36 -4.14 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 25 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 26 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 27 H 0.12 2.57 7.94 -52.49 -0.42 2.15 16 28 H 0.26 7.27 8.32 -40.82 -0.34 6.93 16 29 H 0.09 1.56 7.61 -51.93 -0.40 1.16 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.39 4.51 9.10 45.56 0.41 4.92 16 32 H 0.12 2.17 7.66 -52.49 -0.40 1.77 16 33 H 0.11 1.70 6.30 -52.49 -0.33 1.37 16 LS Contribution 290.49 15.07 4.38 4.38 Total: -1.00 -31.97 290.49 -5.64 -37.61 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.10 Total: 4.68 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.58 Total: -12.31 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.71 Total: -24.52 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -1.03 Total: -26.62 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.97 -5.64 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.365 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds