Wall clock time and date at job start Mon Mar 30 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35903 * 116.99744 * 2 1 4 4 C 1.38732 * 120.05109 * 180.02562 * 3 2 1 5 5 C 1.38153 * 119.94119 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05610 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.94394 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47275 * 359.97438 * 7 6 5 9 9 C 1.50703 * 109.46972 * 240.00276 * 7 6 5 10 10 H 1.08007 * 119.99720 * 273.36790 * 9 7 6 11 11 C 1.37871 * 120.00176 * 93.36520 * 9 7 6 12 12 N 1.31515 * 120.00318 * 353.06670 * 11 9 7 13 13 Si 1.86809 * 120.00042 * 173.06758 * 11 9 7 14 14 H 1.48497 * 109.46878 * 60.00244 * 13 11 9 15 15 H 1.48501 * 109.47051 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46692 * 300.00040 * 13 11 9 17 17 C 1.52996 * 109.47231 * 120.00432 * 7 6 5 18 18 C 1.50707 * 109.47066 * 185.98656 * 17 7 6 19 19 O 1.20826 * 119.99502 * 3.51982 * 18 17 7 20 20 O 1.34222 * 120.00026 * 183.52176 * 18 17 7 21 21 C 1.38269 * 120.10803 * 0.27507 * 6 5 4 22 22 C 1.38148 * 120.05941 * 359.45931 * 21 6 5 23 23 H 1.08997 * 109.47128 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46750 * 300.00357 * 1 2 3 25 25 H 1.08990 * 109.46982 * 60.00055 * 1 2 3 26 26 H 1.07997 * 120.03244 * 359.94772 * 4 3 2 27 27 H 1.07997 * 119.97273 * 180.02562 * 5 4 3 28 28 H 0.97001 * 120.00304 * 185.02900 * 12 11 9 29 29 H 1.09001 * 109.47624 * 65.98531 * 17 7 6 30 30 H 1.09000 * 109.47097 * 305.97971 * 17 7 6 31 31 H 0.96694 * 117.00254 * 179.97438 * 20 18 17 32 32 H 1.07998 * 119.96677 * 179.69807 * 21 6 5 33 33 H 1.07995 * 120.03207 * 180.27509 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6759 -0.0016 7 6 3.9860 5.0186 -0.0028 8 1 5.0666 4.8758 -0.0026 9 6 3.5816 5.7895 1.2274 10 1 2.6842 6.3905 1.2172 11 6 4.3569 5.7275 2.3657 12 7 5.3713 4.8927 2.4258 13 14 3.9665 6.8293 3.8229 14 1 2.5931 6.5401 4.3081 15 1 4.9415 6.5722 4.9131 16 1 4.0550 8.2517 3.4056 17 6 3.5744 5.7996 -1.2523 18 6 4.3685 7.0782 -1.3298 19 8 5.2248 7.3081 -0.5089 20 8 4.1244 7.9614 -2.3106 21 6 1.9211 3.6048 0.0041 22 6 1.2915 2.3751 -0.0009 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 4.0209 0.3800 -0.0001 27 1 5.1345 2.5751 -0.0019 28 1 5.8718 4.7961 3.2511 29 1 2.5114 6.0348 -1.2002 30 1 3.7701 5.1963 -2.1388 31 1 4.6589 8.7671 -2.3188 32 1 1.3342 4.5114 0.0086 33 1 0.2129 2.3201 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084487530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:28 Heat of formation + Delta-G solvation = -132.810495 kcal Electronic energy + Delta-G solvation = -18080.620424 eV Core-core repulsion = 15070.599563 eV Total energy + Delta-G solvation = -3010.020861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.08948 -40.69074 -38.58676 -36.86399 -35.49116 -33.32540 -31.73751 -30.20803 -28.16166 -27.40154 -24.68009 -23.35223 -22.27075 -20.95657 -18.94266 -18.70005 -18.54602 -17.43212 -16.64276 -16.49796 -16.46972 -16.42295 -15.70932 -14.91169 -14.63540 -14.46577 -14.25899 -13.71319 -13.63094 -13.36918 -12.88042 -12.69639 -12.64933 -12.56430 -12.23331 -12.09884 -11.80662 -11.67191 -11.24373 -11.20736 -10.94123 -10.46685 -9.68696 -8.73558 -8.03407 -6.10002 0.65795 0.79397 1.37976 1.42299 1.46164 1.59549 2.45340 2.46421 2.55674 3.09079 3.33246 4.08753 4.16843 4.35977 4.47501 4.48555 4.55090 4.59773 4.70669 4.76695 4.81631 4.85406 5.00656 5.23413 5.32220 5.55914 5.59568 5.77388 5.83089 5.88636 6.05686 6.19004 6.37679 6.67548 6.98696 7.34566 7.54088 9.03500 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.007521 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.835497 B = 3722.218798 C = 4586.079577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.093 3.907 4 C -0.163 4.163 5 C -0.092 4.092 6 C -0.075 4.075 7 C 0.082 3.918 8 H 0.031 0.969 9 C -0.502 4.502 10 H 0.053 0.947 11 C 0.025 3.975 12 N -0.913 5.913 13 Si 0.936 3.064 14 H -0.267 1.267 15 H -0.290 1.290 16 H -0.280 1.280 17 C -0.094 4.094 18 C 0.478 3.522 19 O -0.533 6.533 20 O -0.520 6.520 21 C -0.083 4.083 22 C -0.205 4.205 23 H 0.119 0.881 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.256 0.744 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.417 0.583 32 H 0.128 0.872 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 -3.948 -8.247 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.048 3.952 4 C -0.182 4.182 5 C -0.111 4.111 6 C -0.076 4.076 7 C 0.063 3.937 8 H 0.049 0.951 9 C -0.540 4.540 10 H 0.071 0.929 11 C -0.174 4.174 12 N -0.552 5.552 13 Si 0.763 3.237 14 H -0.192 1.192 15 H -0.216 1.216 16 H -0.206 1.206 17 C -0.132 4.132 18 C 0.321 3.679 19 O -0.421 6.421 20 O -0.334 6.334 21 C -0.102 4.102 22 C -0.223 4.223 23 H 0.138 0.862 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.147 0.853 27 H 0.126 0.874 28 H 0.065 0.935 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.277 0.723 32 H 0.146 0.854 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.095 -4.443 -7.912 12.847 hybrid contribution 0.522 1.302 1.242 1.873 sum -8.574 -3.141 -6.670 11.307 Atomic orbital electron populations 1.23275 0.76919 1.05235 1.01979 1.85987 1.23154 1.26801 1.89452 1.18947 0.92149 0.84585 0.99473 1.20442 0.92083 0.98073 1.07566 1.20872 0.99382 0.91739 0.99061 1.20361 0.94094 0.95743 0.97415 1.17635 0.96085 0.88627 0.91304 0.95067 1.21082 1.08199 1.27085 0.97644 0.92869 1.25521 0.94629 0.96165 1.01107 1.70000 1.21011 1.37258 1.26916 0.85953 0.78041 0.79879 0.79792 1.19210 1.21566 1.20594 1.21513 1.00425 0.90215 1.01049 1.23830 0.81517 0.85723 0.76868 1.90751 1.33802 1.77123 1.40423 1.84510 1.64107 1.33793 1.50998 1.20873 0.93901 0.97304 0.98076 1.21355 1.00558 0.91692 1.08724 0.86239 0.92527 0.91701 0.85278 0.87367 0.93493 0.87400 0.87682 0.72271 0.85416 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.34 -10.20 10.50 -92.46 -0.97 -11.17 16 3 C 0.09 3.22 6.69 22.51 0.15 3.37 16 4 C -0.16 -6.14 9.99 22.37 0.22 -5.91 16 5 C -0.09 -3.92 9.66 22.26 0.22 -3.70 16 6 C -0.08 -3.26 4.77 -19.85 -0.09 -3.35 16 7 C 0.08 3.90 1.65 -12.29 -0.02 3.88 16 8 H 0.03 1.73 6.92 -2.39 -0.02 1.72 16 9 C -0.50 -26.65 6.66 25.60 0.17 -26.48 16 10 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 11 C 0.03 1.43 5.45 84.65 0.46 1.90 16 12 N -0.91 -54.44 12.89 21.45 0.28 -54.16 16 13 Si 0.94 45.27 29.55 68.60 2.03 47.30 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 16 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 17 C -0.09 -3.55 5.00 29.85 0.15 -3.41 16 18 C 0.48 18.77 8.05 71.24 0.57 19.34 16 19 O -0.53 -26.33 15.85 21.96 0.35 -25.99 16 20 O -0.52 -15.22 13.42 -51.34 -0.69 -15.91 16 21 C -0.08 -3.13 8.86 22.26 0.20 -2.93 16 22 C -0.20 -6.71 9.04 22.37 0.20 -6.51 16 23 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 25 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 26 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 27 H 0.11 4.79 7.94 -2.91 -0.02 4.77 16 28 H 0.26 14.83 8.32 -92.71 -0.77 14.05 16 29 H 0.11 3.61 7.61 -2.39 -0.02 3.59 16 30 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.42 8.54 9.10 -74.06 -0.67 7.87 16 32 H 0.13 4.43 7.66 -2.91 -0.02 4.40 16 33 H 0.15 3.75 6.30 -2.91 -0.02 3.73 16 Total: -1.00 -70.36 290.49 4.79 -65.57 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.46 Total: 16.67 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 3.34 Total: -22.31 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.28 Total: -54.16 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -1.31 Total: -53.07 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.36 4.79 -65.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084487530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.238 kcal (2) G-P(sol) polarization free energy of solvation -70.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds