Wall clock time and date at job start Mon Mar 30 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47364 * 2 1 4 4 C 1.35722 * 117.00112 * 179.97438 * 3 2 1 5 5 C 1.39031 * 119.92756 * 0.02882 * 4 3 2 6 6 C 1.37652 * 120.14271 * 180.02562 * 5 4 3 7 7 C 1.40003 * 120.00358 * 359.97438 * 6 5 4 8 8 C 1.47560 * 120.06964 * 179.97438 * 7 6 5 9 9 O 1.21841 * 119.99690 * 180.02562 * 8 7 6 10 10 C 1.41686 * 120.00179 * 0.02562 * 8 7 6 11 11 H 1.08004 * 119.99749 * 359.97438 * 10 8 7 12 12 C 1.40350 * 120.00102 * 179.97438 * 10 8 7 13 13 N 1.30528 * 120.00121 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 120.00042 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47189 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47242 * 120.00006 * 14 12 10 17 17 H 1.48503 * 109.47281 * 239.99801 * 14 12 10 18 18 C 1.39899 * 119.85911 * 359.71502 * 7 6 5 19 19 C 1.38004 * 119.85286 * 0.56143 * 18 7 6 20 20 O 1.35960 * 120.00394 * 179.72634 * 19 18 7 21 21 C 1.42903 * 116.99976 * 359.73236 * 20 19 18 22 22 H 1.09008 * 109.46873 * 59.99814 * 1 2 3 23 23 H 1.08997 * 109.47418 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46902 * 300.00043 * 1 2 3 25 25 H 1.09005 * 109.47261 * 240.00038 * 2 1 3 26 26 H 1.09000 * 109.47203 * 120.00255 * 2 1 3 27 27 H 1.07999 * 119.92368 * 0.02562 * 5 4 3 28 28 H 1.08002 * 119.99828 * 180.02562 * 6 5 4 29 29 H 0.97003 * 119.99716 * 180.02562 * 13 12 10 30 30 H 1.08000 * 120.06990 * 180.31901 * 18 7 6 31 31 H 1.09002 * 109.47382 * 179.97438 * 21 20 19 32 32 H 1.09001 * 109.46938 * 59.99679 * 21 20 19 33 33 H 1.09004 * 109.46926 * 299.99800 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3519 1.5250 0.0005 5 6 4.1974 0.4214 0.0005 6 6 5.5627 0.5966 0.0015 7 6 6.1028 1.8882 0.0022 8 6 7.5662 2.0777 0.0039 9 8 8.0348 3.2024 0.0049 10 6 8.4264 0.9518 0.0044 11 1 8.0109 -0.0451 0.0039 12 6 9.8183 1.1321 0.0055 13 7 10.3203 2.3370 0.0056 14 14 10.9523 -0.3523 0.0068 15 1 10.1403 -1.5956 0.0058 16 1 11.8101 -0.3210 -1.2050 17 1 11.8082 -0.3203 1.2200 18 6 5.2522 2.9989 -0.0043 19 6 3.8842 2.8165 0.0004 20 8 3.0547 3.8937 -0.0003 21 6 3.6677 5.1846 0.0000 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.7820 -0.5755 -0.0005 28 1 6.2174 -0.2624 0.0010 29 1 11.2824 2.4615 0.0059 30 1 5.6651 3.9968 -0.0090 31 1 2.8953 5.9536 -0.0011 32 1 4.2883 5.2922 -0.8896 33 1 4.2871 5.2924 0.8904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084909745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:51 Heat of formation + Delta-G solvation = -95.887379 kcal Electronic energy + Delta-G solvation = -17813.596363 eV Core-core repulsion = 14805.176609 eV Total energy + Delta-G solvation = -3008.419755 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02420 -38.18552 -37.22074 -35.40948 -32.73178 -31.75998 -29.72798 -29.32020 -27.42727 -26.10869 -23.75508 -22.50016 -21.10191 -19.73081 -18.12826 -17.21415 -16.02124 -16.00046 -15.69844 -15.25237 -15.14748 -14.27587 -13.89197 -13.86778 -13.13044 -13.08750 -12.77615 -12.36547 -12.27515 -11.84342 -11.69369 -11.55223 -11.32974 -11.09934 -10.94491 -10.80151 -10.67667 -10.35809 -10.15724 -10.02995 -9.01529 -8.10479 -7.52791 -7.19979 -6.34949 -4.94717 1.78132 1.99559 3.01367 3.10658 3.15015 3.47513 3.69042 3.97477 3.97963 4.60034 4.95415 5.01009 5.25305 5.32229 5.41624 5.47805 5.53022 5.66187 5.76066 5.77011 5.78244 5.84341 5.99102 6.01736 6.12811 6.33299 6.78583 6.91373 7.20791 7.29644 7.31872 7.46200 7.99627 8.05288 8.74855 8.79830 10.26736 10.48672 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.005773 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.850212 B = 4849.300474 C = 5861.400312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.310 6.310 4 C 0.086 3.914 5 C -0.186 4.186 6 C -0.090 4.090 7 C -0.099 4.099 8 C 0.387 3.613 9 O -0.544 6.544 10 C -0.514 4.514 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.734 5.734 14 Si 0.907 3.093 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.273 1.273 18 C -0.143 4.143 19 C 0.082 3.918 20 O -0.315 6.315 21 C 0.028 3.972 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.274 0.726 30 H 0.139 0.861 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.713 -4.073 -0.015 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.225 6.225 4 C 0.041 3.959 5 C -0.205 4.205 6 C -0.109 4.109 7 C -0.101 4.101 8 C 0.283 3.717 9 O -0.434 6.434 10 C -0.545 4.545 11 H 0.094 0.906 12 C -0.145 4.145 13 N -0.362 5.362 14 Si 0.731 3.269 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.198 1.198 18 C -0.162 4.162 19 C 0.037 3.963 20 O -0.230 6.230 21 C -0.067 4.067 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.145 0.855 28 H 0.152 0.848 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.748 -3.242 -0.015 13.153 hybrid contribution 0.828 -0.942 0.000 1.254 sum -11.919 -4.184 -0.015 12.632 Atomic orbital electron populations 1.21744 0.93254 1.02331 1.03338 1.22691 0.95418 0.82911 1.01136 1.86037 1.18906 1.28037 1.89500 1.18312 0.82331 0.91171 1.04107 1.20982 0.94306 0.96595 1.08616 1.21295 0.93291 0.97820 0.98486 1.21659 0.99496 0.91582 0.97352 1.18057 0.83953 0.90260 0.79389 1.90503 1.76899 1.26628 1.49348 1.20958 0.91443 0.95132 1.46944 0.90620 1.26022 0.99182 0.96538 0.92718 1.69970 1.13235 1.22403 1.30611 0.86311 0.80066 0.81979 0.78563 1.18326 1.19809 1.19804 1.21326 0.90036 1.01156 1.03723 1.18165 0.88915 0.84919 1.04301 1.86058 1.34080 1.13022 1.89791 1.22991 0.99366 0.82669 1.01719 0.91708 0.90766 0.91703 0.92368 0.92367 0.85536 0.84786 0.91501 0.84354 0.88854 0.92726 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.05 0.66 5.45 37.16 0.20 0.86 16 3 O -0.31 -5.28 9.91 -33.41 -0.33 -5.61 16 4 C 0.09 1.62 6.72 -38.75 -0.26 1.36 16 5 C -0.19 -3.31 9.01 -39.50 -0.36 -3.67 16 6 C -0.09 -1.85 9.43 -39.13 -0.37 -2.22 16 7 C -0.10 -2.38 5.89 -104.81 -0.62 -3.00 16 8 C 0.39 10.99 6.90 -34.47 -0.24 10.75 16 9 O -0.54 -17.25 14.88 5.06 0.08 -17.18 16 10 C -0.51 -14.00 8.85 -37.47 -0.33 -14.33 16 11 H 0.08 1.86 6.01 -52.48 -0.32 1.54 16 12 C 0.08 2.10 5.50 -17.31 -0.10 2.00 16 13 N -0.73 -20.93 11.73 55.57 0.65 -20.28 16 14 Si 0.91 18.99 29.56 -169.99 -5.03 13.96 16 15 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 C -0.14 -3.18 8.58 -39.05 -0.33 -3.52 16 19 C 0.08 1.65 6.70 -39.13 -0.26 1.39 16 20 O -0.32 -5.87 10.28 -34.15 -0.35 -6.22 16 21 C 0.03 0.41 9.81 101.05 0.99 1.40 16 22 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 26 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 27 H 0.13 1.80 6.28 -52.49 -0.33 1.47 16 28 H 0.13 2.59 6.19 -52.49 -0.32 2.27 16 29 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 30 H 0.14 3.08 5.87 -52.49 -0.31 2.77 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.79 7.65 -51.93 -0.40 0.40 16 33 H 0.05 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 286.63 15.07 4.32 4.32 Total: -1.00 -33.46 286.63 -5.64 -39.10 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.69 Total: 1.90 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.29 Total: -10.00 kcal Atomic # 7 Polarization: -20.93 SS G_CDS: 0.65 Total: -20.28 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.61 Total: -29.01 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.46 -5.64 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084909745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.783 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds