Wall clock time and date at job start Mon Mar 30 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47364 * 2 1 4 4 C 1.35722 * 117.00112 * 179.97438 * 3 2 1 5 5 C 1.39031 * 119.92756 * 0.02882 * 4 3 2 6 6 C 1.37652 * 120.14271 * 180.02562 * 5 4 3 7 7 C 1.40003 * 120.00358 * 359.97438 * 6 5 4 8 8 C 1.47560 * 120.06964 * 179.97438 * 7 6 5 9 9 O 1.21841 * 119.99690 * 180.02562 * 8 7 6 10 10 C 1.41686 * 120.00179 * 0.02562 * 8 7 6 11 11 H 1.08004 * 119.99749 * 359.97438 * 10 8 7 12 12 C 1.40350 * 120.00102 * 179.97438 * 10 8 7 13 13 N 1.30528 * 120.00121 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 120.00042 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47189 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47242 * 120.00006 * 14 12 10 17 17 H 1.48503 * 109.47281 * 239.99801 * 14 12 10 18 18 C 1.39899 * 119.85911 * 359.71502 * 7 6 5 19 19 C 1.38004 * 119.85286 * 0.56143 * 18 7 6 20 20 O 1.35960 * 120.00394 * 179.72634 * 19 18 7 21 21 C 1.42903 * 116.99976 * 359.73236 * 20 19 18 22 22 H 1.09008 * 109.46873 * 59.99814 * 1 2 3 23 23 H 1.08997 * 109.47418 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46902 * 300.00043 * 1 2 3 25 25 H 1.09005 * 109.47261 * 240.00038 * 2 1 3 26 26 H 1.09000 * 109.47203 * 120.00255 * 2 1 3 27 27 H 1.07999 * 119.92368 * 0.02562 * 5 4 3 28 28 H 1.08002 * 119.99828 * 180.02562 * 6 5 4 29 29 H 0.97003 * 119.99716 * 180.02562 * 13 12 10 30 30 H 1.08000 * 120.06990 * 180.31901 * 18 7 6 31 31 H 1.09002 * 109.47382 * 179.97438 * 21 20 19 32 32 H 1.09001 * 109.46938 * 59.99679 * 21 20 19 33 33 H 1.09004 * 109.46926 * 299.99800 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3519 1.5250 0.0005 5 6 4.1974 0.4214 0.0005 6 6 5.5627 0.5966 0.0015 7 6 6.1028 1.8882 0.0022 8 6 7.5662 2.0777 0.0039 9 8 8.0348 3.2024 0.0049 10 6 8.4264 0.9518 0.0044 11 1 8.0109 -0.0451 0.0039 12 6 9.8183 1.1321 0.0055 13 7 10.3203 2.3370 0.0056 14 14 10.9523 -0.3523 0.0068 15 1 10.1403 -1.5956 0.0058 16 1 11.8101 -0.3210 -1.2050 17 1 11.8082 -0.3203 1.2200 18 6 5.2522 2.9989 -0.0043 19 6 3.8842 2.8165 0.0004 20 8 3.0547 3.8937 -0.0003 21 6 3.6677 5.1846 0.0000 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.7820 -0.5755 -0.0005 28 1 6.2174 -0.2624 0.0010 29 1 11.2824 2.4615 0.0059 30 1 5.6651 3.9968 -0.0090 31 1 2.8953 5.9536 -0.0011 32 1 4.2883 5.2922 -0.8896 33 1 4.2871 5.2924 0.8904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084909745.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:51 Heat of formation + Delta-G solvation = -117.979801 kcal Electronic energy + Delta-G solvation = -17814.554362 eV Core-core repulsion = 14805.176609 eV Total energy + Delta-G solvation = -3009.377754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.49410 -39.53766 -39.07834 -37.13825 -34.80010 -32.79734 -31.29074 -30.90686 -29.07003 -27.74676 -24.96858 -24.07720 -22.54974 -21.46772 -19.57495 -18.89860 -17.79091 -17.29741 -17.19512 -16.98830 -16.40923 -15.80004 -15.56824 -15.22851 -14.93445 -14.48143 -14.00686 -13.97336 -13.49741 -13.32314 -13.15849 -12.93383 -12.90248 -12.70476 -12.52078 -12.19440 -11.99431 -11.92388 -11.72625 -11.52084 -11.00669 -9.69205 -9.64523 -8.76198 -8.36221 -7.08813 0.12296 0.41946 1.38119 1.39683 1.58447 2.17192 2.21086 2.24707 2.32971 2.79120 3.71498 3.84447 3.98658 4.06861 4.12965 4.27123 4.31345 4.33339 4.40975 4.48904 4.50155 4.65004 4.71684 4.91740 5.00132 5.12831 5.18771 5.27407 5.34767 5.66827 5.69888 5.96969 6.10636 6.61881 6.68563 6.77636 8.22808 8.47527 Molecular weight = 250.10amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.005773 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.850212 B = 4849.300474 C = 5861.400312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.038 3.962 3 O -0.322 6.322 4 C 0.097 3.903 5 C -0.171 4.171 6 C -0.086 4.086 7 C -0.141 4.141 8 C 0.362 3.638 9 O -0.600 6.600 10 C -0.538 4.538 11 H 0.100 0.900 12 C 0.021 3.979 13 N -0.787 5.787 14 Si 0.998 3.002 15 H -0.240 1.240 16 H -0.266 1.266 17 H -0.265 1.265 18 C -0.154 4.154 19 C 0.073 3.927 20 O -0.322 6.322 21 C 0.023 3.977 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.172 0.828 28 H 0.145 0.855 29 H 0.282 0.718 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.049 0.951 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.308 -7.126 -0.016 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 O -0.237 6.237 4 C 0.051 3.949 5 C -0.189 4.189 6 C -0.104 4.104 7 C -0.142 4.142 8 C 0.263 3.737 9 O -0.495 6.495 10 C -0.568 4.568 11 H 0.118 0.882 12 C -0.197 4.197 13 N -0.416 5.416 14 Si 0.816 3.184 15 H -0.163 1.163 16 H -0.190 1.190 17 H -0.190 1.190 18 C -0.173 4.173 19 C 0.028 3.972 20 O -0.237 6.237 21 C -0.072 4.072 22 H 0.079 0.921 23 H 0.123 0.877 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.189 0.811 28 H 0.163 0.837 29 H 0.093 0.907 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.068 0.932 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.387 -6.308 -0.016 15.709 hybrid contribution 1.127 0.038 0.000 1.127 sum -13.260 -6.271 -0.016 14.668 Atomic orbital electron populations 1.21787 0.91225 1.04229 1.03024 1.23174 0.97112 0.80743 1.02564 1.86056 1.17377 1.31411 1.88822 1.18492 0.83674 0.90822 1.01926 1.21315 0.92788 0.98348 1.06479 1.21379 0.94796 0.96428 0.97815 1.21345 0.97403 0.93868 1.01598 1.18779 0.86510 0.89976 0.78473 1.90443 1.78570 1.28326 1.52147 1.21482 0.92435 0.95912 1.46943 0.88229 1.27331 1.00974 1.00262 0.91180 1.70118 1.14268 1.25728 1.31438 0.84968 0.77228 0.77354 0.78858 1.16263 1.19021 1.19012 1.21187 0.91127 1.00175 1.04828 1.18268 0.88221 0.86410 1.04322 1.86045 1.34244 1.13817 1.89589 1.23248 1.00697 0.81967 1.01283 0.92052 0.87724 0.92048 0.90844 0.90845 0.81058 0.83691 0.90717 0.85997 0.84931 0.93219 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.04 0.79 5.45 71.98 0.39 1.18 16 3 O -0.32 -10.09 9.91 -76.54 -0.76 -10.85 16 4 C 0.10 3.48 6.72 22.81 0.15 3.64 16 5 C -0.17 -5.60 9.01 22.32 0.20 -5.40 16 6 C -0.09 -3.43 9.43 22.56 0.21 -3.22 16 7 C -0.14 -6.98 5.89 -19.99 -0.12 -7.10 16 8 C 0.36 21.61 6.90 25.58 0.18 21.79 16 9 O -0.60 -40.75 14.88 -4.80 -0.07 -40.82 16 10 C -0.54 -29.87 8.85 23.64 0.21 -29.66 16 11 H 0.10 4.84 6.01 -2.91 -0.02 4.82 16 12 C 0.02 1.16 5.50 85.40 0.47 1.63 16 13 N -0.79 -46.60 11.73 21.89 0.26 -46.34 16 14 Si 1.00 38.59 29.56 68.60 2.03 40.62 16 15 H -0.24 -8.44 7.11 99.48 0.71 -7.73 16 16 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 17 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 18 C -0.15 -7.15 8.58 22.62 0.19 -6.96 16 19 C 0.07 2.96 6.70 22.56 0.15 3.11 16 20 O -0.32 -11.93 10.28 -79.20 -0.81 -12.75 16 21 C 0.02 0.67 9.81 113.37 1.11 1.78 16 22 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.32 7.65 -2.38 -0.02 1.30 16 26 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 27 H 0.17 4.01 6.28 -2.91 -0.02 3.99 16 28 H 0.15 5.35 6.19 -2.91 -0.02 5.34 16 29 H 0.28 14.86 8.29 -92.71 -0.77 14.09 16 30 H 0.12 5.89 5.87 -2.91 -0.02 5.87 16 31 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.05 1.51 7.65 -2.39 -0.02 1.49 16 33 H 0.05 1.51 7.67 -2.38 -0.02 1.49 16 Total: -1.00 -77.19 286.63 5.67 -71.52 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.13 Total: 19.33 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.90 Total: -20.71 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.26 Total: -46.34 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -1.64 Total: -64.42 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -77.19 5.67 -71.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084909745.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.456 kcal (2) G-P(sol) polarization free energy of solvation -77.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds