Wall clock time and date at job start Mon Mar 30 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47115 * 300.00370 * 3 2 1 6 6 H 1.48503 * 109.46839 * 60.00350 * 3 2 1 7 7 C 1.37870 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00084 * 164.82075 * 7 2 1 9 9 C 1.50700 * 120.00169 * 344.81221 * 7 2 1 10 10 C 1.52999 * 115.55185 * 324.70546 * 9 7 2 11 11 O 1.42899 * 109.47308 * 305.68572 * 10 9 7 12 12 C 1.42895 * 114.00163 * 184.08438 * 11 10 9 13 13 C 1.50697 * 109.47391 * 183.45463 * 12 11 10 14 14 C 1.38226 * 120.01352 * 5.22052 * 13 12 11 15 15 C 1.38218 * 120.02725 * 180.02562 * 14 13 12 16 16 C 1.38266 * 120.05409 * 359.96965 * 15 14 13 17 17 C 1.38181 * 120.02181 * 0.02562 * 16 15 14 18 18 C 1.38440 * 120.01545 * 185.21786 * 13 12 11 19 19 F 1.35100 * 120.02163 * 0.02562 * 18 13 12 20 20 C 1.52999 * 117.49783 * 110.37804 * 9 7 2 21 21 C 1.53004 * 117.49880 * 179.03876 * 9 7 2 22 22 H 0.96992 * 120.00324 * 5.08827 * 1 2 3 23 23 H 1.08998 * 109.47377 * 185.67946 * 10 9 7 24 24 H 1.08997 * 109.46638 * 65.68238 * 10 9 7 25 25 H 1.09003 * 109.47293 * 63.44983 * 12 11 10 26 26 H 1.08999 * 109.47009 * 303.45372 * 12 11 10 27 27 H 1.08001 * 119.98374 * 359.97438 * 14 13 12 28 28 H 1.08002 * 119.97402 * 180.02562 * 15 14 13 29 29 H 1.07991 * 119.98801 * 180.02562 * 16 15 14 30 30 H 1.07995 * 120.00940 * 179.74337 * 17 16 15 31 31 H 1.08998 * 117.49961 * 215.00128 * 20 9 7 32 32 H 1.09006 * 117.50047 * 0.02563 * 20 9 7 33 33 H 1.08995 * 117.49913 * 359.97188 * 21 9 7 34 34 H 1.09000 * 117.49934 * 144.98025 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0564 -1.2102 -0.2455 9 6 1.2906 -2.4765 0.3408 10 6 0.2002 -2.3609 1.4078 11 8 0.7463 -1.7602 2.5838 12 6 -0.1690 -1.6892 3.6789 13 6 0.4805 -0.9662 4.8305 14 6 1.7319 -0.4003 4.6742 15 6 2.3282 0.2624 5.7304 16 6 1.6736 0.3608 6.9444 17 6 0.4225 -0.2039 7.1030 18 6 -0.1759 -0.8683 6.0455 19 9 -1.3988 -1.4214 6.1995 20 6 1.0694 -3.4841 -0.7891 21 6 2.1054 -3.7709 0.3008 22 1 -0.4850 0.8366 -0.0745 23 1 -0.1785 -3.3540 1.6494 24 1 -0.6145 -1.7436 1.0293 25 1 -0.4419 -2.6975 3.9903 26 1 -1.0643 -1.1497 3.3697 27 1 2.2443 -0.4769 3.7266 28 1 3.3058 0.7046 5.6072 29 1 2.1403 0.8792 7.7688 30 1 -0.0868 -0.1305 8.0524 31 1 0.1470 -4.0647 -0.7722 32 1 1.4406 -3.2196 -1.7792 33 1 3.1577 -3.6949 0.0271 34 1 1.8648 -4.5400 1.0348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088272192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:49 Heat of formation + Delta-G solvation = -40.051849 kcal Electronic energy + Delta-G solvation = -18101.540551 eV Core-core repulsion = 15107.914796 eV Total energy + Delta-G solvation = -2993.625755 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.71867 -38.89175 -37.31441 -35.49928 -32.09226 -31.55656 -30.30104 -26.58519 -25.43601 -24.65236 -22.36410 -21.28037 -21.09211 -19.09887 -17.42998 -16.49187 -16.15672 -15.68533 -15.56384 -14.91107 -14.76204 -14.39100 -14.05156 -13.81254 -13.38107 -12.89657 -12.81484 -12.19813 -11.90013 -11.58031 -11.42196 -11.00154 -10.86945 -10.71820 -10.57257 -10.39962 -10.21539 -9.40938 -9.04673 -8.91269 -8.68341 -8.59859 -8.31891 -7.96028 -6.00366 -3.99605 1.32873 1.44328 3.29588 3.39047 3.42651 3.80367 4.29765 4.42016 4.50964 4.92951 5.02712 5.19963 5.22253 5.48987 5.57979 5.64494 5.84329 5.97529 6.12142 6.15416 6.25197 6.29898 6.32034 6.53504 6.64737 6.68031 6.71952 6.81659 6.91549 7.10486 7.11600 7.33238 7.50800 7.95832 8.28285 8.48656 8.93918 9.58502 11.02621 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.007501 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.713331 B = 3731.874628 C = 4444.586653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.482 4.482 8 H 0.059 0.941 9 C 0.056 3.944 10 C 0.107 3.893 11 O -0.358 6.358 12 C 0.103 3.897 13 C -0.107 4.107 14 C -0.061 4.061 15 C -0.134 4.134 16 C -0.102 4.102 17 C -0.161 4.161 18 C 0.093 3.907 19 F -0.142 7.142 20 C -0.199 4.199 21 C -0.210 4.210 22 H 0.260 0.740 23 H 0.004 0.996 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.152 0.848 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 -0.421 11.277 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.122 4.122 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.519 4.519 8 H 0.078 0.922 9 C 0.056 3.944 10 C 0.031 3.969 11 O -0.276 6.276 12 C 0.025 3.975 13 C -0.108 4.108 14 C -0.079 4.079 15 C -0.152 4.152 16 C -0.120 4.120 17 C -0.179 4.179 18 C 0.074 3.926 19 F -0.121 7.121 20 C -0.237 4.237 21 C -0.248 4.248 22 H 0.070 0.930 23 H 0.022 0.978 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.170 0.830 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.340 -0.240 11.351 11.358 hybrid contribution -0.118 0.609 -0.015 0.621 sum 0.222 0.369 11.336 11.344 Atomic orbital electron populations 1.69844 1.06150 1.26568 1.49017 1.24848 0.94615 0.98858 0.93876 0.86605 0.80443 0.83783 0.77595 1.19675 1.21324 1.20652 1.20400 0.95345 0.89435 1.46723 0.92232 1.18834 0.94370 0.88869 0.92340 1.22144 0.98067 0.93192 0.83469 1.87900 1.36600 1.82292 1.20836 1.20893 0.92655 0.97388 0.86534 1.19951 0.96353 1.01069 0.93447 1.21209 0.93405 0.93320 0.99976 1.21292 1.00617 1.00181 0.93113 1.20948 0.94128 0.99155 0.97788 1.20973 0.97174 1.01524 0.98272 1.17483 0.81617 0.98946 0.94587 1.91462 1.40888 1.83530 1.96213 1.22956 0.98539 1.06873 0.95295 1.22920 0.96425 1.02886 1.02524 0.93012 0.97818 0.89130 0.93195 0.92266 0.83029 0.85472 0.85508 0.85163 0.91780 0.90110 0.90617 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.21 10.97 55.43 0.61 -23.60 16 2 C 0.08 2.19 5.13 -17.82 -0.09 2.10 16 3 Si 0.89 21.05 29.57 -169.99 -5.03 16.02 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.48 -13.16 8.75 -34.44 -0.30 -13.46 16 8 H 0.06 1.64 7.86 -52.48 -0.41 1.22 16 9 C 0.06 1.41 2.09 -155.66 -0.33 1.09 16 10 C 0.11 2.55 5.07 37.16 0.19 2.74 16 11 O -0.36 -8.26 8.50 -35.23 -0.30 -8.56 16 12 C 0.10 2.00 5.90 36.00 0.21 2.21 16 13 C -0.11 -1.92 5.88 -104.55 -0.62 -2.54 16 14 C -0.06 -1.07 9.37 -39.59 -0.37 -1.44 16 15 C -0.13 -1.89 10.04 -39.58 -0.40 -2.28 16 16 C -0.10 -1.26 10.04 -39.59 -0.40 -1.66 16 17 C -0.16 -2.13 10.03 -39.51 -0.40 -2.53 16 18 C 0.09 1.48 7.25 -39.42 -0.29 1.20 16 19 F -0.14 -2.28 16.80 2.25 0.04 -2.24 16 20 C -0.20 -4.52 9.96 -26.69 -0.27 -4.78 16 21 C -0.21 -4.66 9.92 -26.69 -0.26 -4.92 16 22 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 23 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 24 H 0.09 2.34 6.09 -51.93 -0.32 2.03 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.15 2.96 7.02 -52.49 -0.37 2.59 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -28.24 297.02 -7.97 -36.21 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.46 Total: 1.97 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -3.31 Total: -24.27 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.61 Total: -23.60 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.30 Total: -8.56 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.24 -7.97 -36.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.842 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds