Wall clock time and date at job start Mon Mar 30 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48498 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47115 * 300.00370 * 3 2 1 6 6 H 1.48503 * 109.46839 * 60.00350 * 3 2 1 7 7 C 1.37870 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00084 * 164.82075 * 7 2 1 9 9 C 1.50700 * 120.00169 * 344.81221 * 7 2 1 10 10 C 1.52999 * 115.55185 * 324.70546 * 9 7 2 11 11 O 1.42899 * 109.47308 * 305.68572 * 10 9 7 12 12 C 1.42895 * 114.00163 * 184.08438 * 11 10 9 13 13 C 1.50697 * 109.47391 * 183.45463 * 12 11 10 14 14 C 1.38226 * 120.01352 * 5.22052 * 13 12 11 15 15 C 1.38218 * 120.02725 * 180.02562 * 14 13 12 16 16 C 1.38266 * 120.05409 * 359.96965 * 15 14 13 17 17 C 1.38181 * 120.02181 * 0.02562 * 16 15 14 18 18 C 1.38440 * 120.01545 * 185.21786 * 13 12 11 19 19 F 1.35100 * 120.02163 * 0.02562 * 18 13 12 20 20 C 1.52999 * 117.49783 * 110.37804 * 9 7 2 21 21 C 1.53004 * 117.49880 * 179.03876 * 9 7 2 22 22 H 0.96992 * 120.00324 * 5.08827 * 1 2 3 23 23 H 1.08998 * 109.47377 * 185.67946 * 10 9 7 24 24 H 1.08997 * 109.46638 * 65.68238 * 10 9 7 25 25 H 1.09003 * 109.47293 * 63.44983 * 12 11 10 26 26 H 1.08999 * 109.47009 * 303.45372 * 12 11 10 27 27 H 1.08001 * 119.98374 * 359.97438 * 14 13 12 28 28 H 1.08002 * 119.97402 * 180.02562 * 15 14 13 29 29 H 1.07991 * 119.98801 * 180.02562 * 16 15 14 30 30 H 1.07995 * 120.00940 * 179.74337 * 17 16 15 31 31 H 1.08998 * 117.49961 * 215.00128 * 20 9 7 32 32 H 1.09006 * 117.50047 * 0.02563 * 20 9 7 33 33 H 1.08995 * 117.49913 * 359.97188 * 21 9 7 34 34 H 1.09000 * 117.49934 * 144.98025 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0564 -1.2102 -0.2455 9 6 1.2906 -2.4765 0.3408 10 6 0.2002 -2.3609 1.4078 11 8 0.7463 -1.7602 2.5838 12 6 -0.1690 -1.6892 3.6789 13 6 0.4805 -0.9662 4.8305 14 6 1.7319 -0.4003 4.6742 15 6 2.3282 0.2624 5.7304 16 6 1.6736 0.3608 6.9444 17 6 0.4225 -0.2039 7.1030 18 6 -0.1759 -0.8683 6.0455 19 9 -1.3988 -1.4214 6.1995 20 6 1.0694 -3.4841 -0.7891 21 6 2.1054 -3.7709 0.3008 22 1 -0.4850 0.8366 -0.0745 23 1 -0.1785 -3.3540 1.6494 24 1 -0.6145 -1.7436 1.0293 25 1 -0.4419 -2.6975 3.9903 26 1 -1.0643 -1.1497 3.3697 27 1 2.2443 -0.4769 3.7266 28 1 3.3058 0.7046 5.6072 29 1 2.1403 0.8792 7.7688 30 1 -0.0868 -0.1305 8.0524 31 1 0.1470 -4.0647 -0.7722 32 1 1.4406 -3.2196 -1.7792 33 1 3.1577 -3.6949 0.0271 34 1 1.8648 -4.5400 1.0348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088272192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:48 Heat of formation + Delta-G solvation = -53.903389 kcal Electronic energy + Delta-G solvation = -18102.141199 eV Core-core repulsion = 15107.914796 eV Total energy + Delta-G solvation = -2994.226403 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 250.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.93909 -40.15048 -39.03778 -37.23683 -34.13460 -32.86064 -31.45201 -28.25640 -27.34248 -26.33188 -23.56053 -22.95160 -22.47386 -21.02722 -18.71971 -18.22103 -17.60501 -17.10380 -16.85459 -16.65748 -16.35139 -16.12761 -15.64424 -15.08665 -14.97627 -14.42862 -14.10753 -13.68191 -13.53713 -13.15030 -12.96671 -12.82545 -12.64451 -12.31832 -12.17671 -12.06409 -11.93050 -11.29430 -11.01058 -10.66235 -10.48573 -9.93339 -9.85051 -9.58027 -8.04775 -6.10058 0.16098 0.28714 1.38853 1.43730 1.53099 2.43639 2.64494 2.75831 3.10714 3.29273 3.66849 3.77689 3.95803 4.08636 4.26079 4.34920 4.37819 4.47726 4.48459 4.52910 4.66981 4.88707 4.93827 4.95625 5.06030 5.13203 5.21372 5.24445 5.46594 5.50134 5.53153 5.56468 5.89745 5.96378 6.39799 6.58556 6.88754 7.49672 8.96412 Molecular weight = 250.11amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.007501 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.713331 B = 3731.874628 C = 4444.586653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.501 4.501 8 H 0.048 0.952 9 C 0.016 3.984 10 C 0.116 3.884 11 O -0.374 6.374 12 C 0.102 3.898 13 C -0.134 4.134 14 C -0.088 4.088 15 C -0.131 4.131 16 C -0.085 4.085 17 C -0.150 4.150 18 C 0.079 3.921 19 F -0.147 7.147 20 C -0.191 4.191 21 C -0.191 4.191 22 H 0.259 0.741 23 H 0.020 0.980 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.120 0.880 28 H 0.151 0.849 29 H 0.173 0.827 30 H 0.164 0.836 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 0.102 13.451 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.159 4.159 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.016 3.984 10 C 0.040 3.960 11 O -0.293 6.293 12 C 0.026 3.974 13 C -0.135 4.135 14 C -0.106 4.106 15 C -0.148 4.148 16 C -0.103 4.103 17 C -0.168 4.168 18 C 0.060 3.940 19 F -0.126 7.126 20 C -0.229 4.229 21 C -0.228 4.228 22 H 0.069 0.931 23 H 0.038 0.962 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.138 0.862 28 H 0.169 0.831 29 H 0.190 0.810 30 H 0.182 0.818 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.112 0.273 13.521 13.569 hybrid contribution -0.339 0.432 -0.628 0.834 sum 0.773 0.705 12.893 12.935 Atomic orbital electron populations 1.69960 1.07072 1.26980 1.49683 1.25444 0.95323 1.01439 0.93730 0.85765 0.79488 0.80457 0.77519 1.19267 1.20785 1.20617 1.20601 0.94992 0.91088 1.47157 0.93399 1.19020 0.96055 0.89263 0.94062 1.21914 0.96953 0.93441 0.83719 1.87879 1.37702 1.82408 1.21310 1.20957 0.91970 0.98191 0.86329 1.19900 0.97199 1.02664 0.93777 1.21063 0.93756 0.95640 1.00112 1.21584 1.01509 0.98966 0.92788 1.21448 0.93307 0.97538 0.98010 1.21418 0.97352 0.99531 0.98500 1.17675 0.81662 0.99899 0.94762 1.91446 1.41176 1.83767 1.96195 1.22941 0.99510 1.05810 0.94673 1.22926 0.96301 1.01371 1.02219 0.93148 0.96153 0.91752 0.92208 0.93661 0.86232 0.83111 0.80955 0.81800 0.90072 0.90641 0.90399 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.86 10.97 21.45 0.24 -50.63 16 2 C 0.04 2.29 5.13 84.65 0.43 2.72 16 3 Si 0.94 43.89 29.57 68.60 2.03 45.92 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.50 -27.96 8.75 25.60 0.22 -27.73 16 8 H 0.05 2.69 7.86 -2.91 -0.02 2.67 16 9 C 0.02 0.83 2.09 -52.93 -0.11 0.72 16 10 C 0.12 5.66 5.07 71.98 0.37 6.02 16 11 O -0.37 -17.89 8.50 -148.98 -1.27 -19.16 16 12 C 0.10 4.15 5.90 71.23 0.42 4.57 16 13 C -0.13 -4.87 5.88 -19.82 -0.12 -4.99 16 14 C -0.09 -3.08 9.37 22.26 0.21 -2.87 16 15 C -0.13 -3.38 10.04 22.27 0.22 -3.15 16 16 C -0.09 -1.74 10.04 22.26 0.22 -1.52 16 17 C -0.15 -3.44 10.03 22.31 0.22 -3.21 16 18 C 0.08 2.43 7.25 22.38 0.16 2.60 16 19 F -0.15 -4.61 16.80 44.97 0.76 -3.85 16 20 C -0.19 -8.62 9.96 30.62 0.30 -8.32 16 21 C -0.19 -8.31 9.92 30.62 0.30 -8.01 16 22 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 23 H 0.02 0.90 8.09 -2.39 -0.02 0.88 16 24 H 0.06 3.46 6.09 -2.39 -0.01 3.45 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.12 4.91 7.02 -2.91 -0.02 4.89 16 28 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 29 H 0.17 2.03 8.06 -2.92 -0.02 2.00 16 30 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.07 3.43 8.14 -2.38 -0.02 3.41 16 33 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -62.04 297.02 5.71 -56.34 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.09 Total: 14.55 kcal Atomic # 6 Polarization: -46.04 SS G_CDS: 2.87 Total: -43.17 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.24 Total: -50.63 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.27 Total: -19.16 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.76 Total: -3.85 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -62.04 5.71 -56.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.435 kcal (2) G-P(sol) polarization free energy of solvation -62.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds